RNA–Protein interactions for RNA: ENST00000474391.1

COL4A1-203, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 2

Gene COL4A1, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-203ENST00000474391 HIST1H2BJP06899 126 aa6.52□□□□□ -1.37
COL4A1-203ENST00000474391 HIST1H2BOP23527 126 aa6.52□□□□□ -1.37
COL4A1-203ENST00000474391 HIST1H2BBP33778 126 aa6.52□□□□□ -1.37
COL4A1-203ENST00000474391 HIST1H2BDP58876 126 aa6.52□□□□□ -1.37
COL4A1-203ENST00000474391 HIST1H2BCP62807 126 aa6.52□□□□□ -1.37
COL4A1-203ENST00000474391 FABP9Q0Z7S8 132 aa6.52□□□□□ -1.37
COL4A1-203ENST00000474391 SRSF9Q13242 221 aaKnown RBP eCLIP6.52□□□□□ -1.37
COL4A1-203ENST00000474391 HIST2H2BEQ16778 126 aa6.52□□□□□ -1.37
COL4A1-203ENST00000474391 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.52□□□□□ -1.37
COL4A1-203ENST00000474391 SERTAD4-AS1Q5TG53 156 aa6.52□□□□□ -1.37
COL4A1-203ENST00000474391 C2orf82Q6UX34 121 aa6.52□□□□□ -1.37
COL4A1-203ENST00000474391 HIST1H2BHQ93079 126 aa6.52□□□□□ -1.37
COL4A1-203ENST00000474391 SCGB3A1Q96QR1 104 aa6.52□□□□□ -1.37
COL4A1-203ENST00000474391 HIST1H2BNQ99877 126 aa6.52□□□□□ -1.37
COL4A1-203ENST00000474391 HIST1H2BMQ99879 126 aa6.52□□□□□ -1.37
COL4A1-203ENST00000474391 CDKN2A-AS1Q9UH64 79 aa6.52□□□□□ -1.37
COL4A1-203ENST00000474391 SPINK6Q6UWN8 80 aa6.51□□□□□ -1.37
COL4A1-203ENST00000474391 Q8IZM0 81 aa6.51□□□□□ -1.37
COL4A1-203ENST00000474391 IGLV5-45A0A087WSX0 123 aa6.5□□□□□ -1.37
COL4A1-203ENST00000474391 NDUFC2-KCTD14E9PQ53 114 aa6.5□□□□□ -1.37
COL4A1-203ENST00000474391 FA2HQ7L5A8 372 aa6.5□□□□□ -1.37
COL4A1-203ENST00000474391 GEMIN7Q9H840 131 aaKnown RBP6.5□□□□□ -1.37
COL4A1-203ENST00000474391 TINCRA0A1B0GVN0 87 aa6.49□□□□□ -1.37
COL4A1-203ENST00000474391 FAM168BA1KXE4 195 aa6.49□□□□□ -1.37
COL4A1-203ENST00000474391 PRSS2P07478 247 aa6.49□□□□□ -1.37
COL4A1-203ENST00000474391 C6orf226Q5I0X4 101 aa6.49□□□□□ -1.37
COL4A1-203ENST00000474391 PHF5AQ7RTV0 110 aaKnown RBP6.49□□□□□ -1.37
COL4A1-203ENST00000474391 KRTAP7-1Q8IUC3 87 aa6.49□□□□□ -1.37
COL4A1-203ENST00000474391 URB1-AS1Q96HZ7 61 aa6.49□□□□□ -1.37
COL4A1-203ENST00000474391 PACRGQ96M98 296 aaPredicted RBP6.49□□□□□ -1.37
COL4A1-203ENST00000474391 LINC01600Q96MT4 127 aa6.49□□□□□ -1.37
COL4A1-203ENST00000474391 CST9LQ9H4G1 147 aa6.49□□□□□ -1.37
COL4A1-203ENST00000474391 PSORS1C2Q9UIG4 136 aa6.49□□□□□ -1.37
COL4A1-203ENST00000474391 A0A096LNJ9 63 aa6.48□□□□□ -1.37
COL4A1-203ENST00000474391 C5orf52A6NGY3 159 aa6.48□□□□□ -1.37
COL4A1-203ENST00000474391 SMIM1B2RUZ4 78 aa6.48□□□□□ -1.37
COL4A1-203ENST00000474391 CKS1BP61024 79 aa6.48□□□□□ -1.37
COL4A1-203ENST00000474391 PMVKQ15126 192 aa6.48□□□□□ -1.37
COL4A1-203ENST00000474391 GAGE2EQ4V326 116 aa6.48□□□□□ -1.37
COL4A1-203ENST00000474391 C18orf32Q8TCD1 76 aa6.48□□□□□ -1.37
COL4A1-203ENST00000474391 TOMM7Q9P0U1 55 aa6.48□□□□□ -1.37
COL4A1-203ENST00000474391 GAGE2DQ9UEU5 116 aa6.48□□□□□ -1.37
COL4A1-203ENST00000474391 PDZD11Q5EBL8 140 aa6.47□□□□□ -1.37
COL4A1-203ENST00000474391 C9orf129Q5T035 196 aaKnown RBP6.47□□□□□ -1.37
COL4A1-203ENST00000474391 LINC00469Q8N7U9 141 aa6.47□□□□□ -1.37
COL4A1-203ENST00000474391 F8VRH5 84 aa6.46□□□□□ -1.38
COL4A1-203ENST00000474391 S100A6P06703 90 aa6.46□□□□□ -1.38
COL4A1-203ENST00000474391 LINC00614P0C842 121 aa6.46□□□□□ -1.38
COL4A1-203ENST00000474391 CXCL5P42830 114 aa6.46□□□□□ -1.38
COL4A1-203ENST00000474391 REG3GQ6UW15 175 aa6.46□□□□□ -1.38
COL4A1-203ENST00000474391 FAM19A5Q7Z5A7 132 aaPredicted RBP6.46□□□□□ -1.38
COL4A1-203ENST00000474391 KRTAP11-1Q8IUC1 163 aa6.46□□□□□ -1.38
COL4A1-203ENST00000474391 KRTAP10-8P60410 259 aa6.45□□□□□ -1.38
COL4A1-203ENST00000474391 ODF1Q14990 250 aa6.45□□□□□ -1.38
COL4A1-203ENST00000474391 C1orf137Q5JT78 98 aa6.45□□□□□ -1.38
COL4A1-203ENST00000474391 HMCN2Q8NDA2 5059 aa6.45□□□□□ -1.38
COL4A1-203ENST00000474391 M0QXV9 152 aa6.44□□□□□ -1.38
COL4A1-203ENST00000474391 HBDP02042 147 aa6.44□□□□□ -1.38
COL4A1-203ENST00000474391 IGLC3P0DOY3 106 aa6.44□□□□□ -1.38
COL4A1-203ENST00000474391 LINC00310P59036 64 aa6.44□□□□□ -1.38
COL4A1-203ENST00000474391 COX7B2Q8TF08 81 aa6.44□□□□□ -1.38
COL4A1-203ENST00000474391 CHCHD1Q96BP2 118 aaKnown RBP6.44□□□□□ -1.38
COL4A1-203ENST00000474391 TNXBP22105 4242 aa6.43□□□□□ -1.38
COL4A1-203ENST00000474391 IGLV7-43P04211 117 aa6.43□□□□□ -1.38
COL4A1-203ENST00000474391 NDUFA6P56556 154 aa6.43□□□□□ -1.38
COL4A1-203ENST00000474391 PLA2G2DQ9UNK4 145 aa6.43□□□□□ -1.38
COL4A1-203ENST00000474391 IGLV5-39A0A0G2JS06 123 aa6.42□□□□□ -1.38
COL4A1-203ENST00000474391 H3BRM9 83 aa6.42□□□□□ -1.38
COL4A1-203ENST00000474391 SPINK8P0C7L1 97 aa6.42□□□□□ -1.38
COL4A1-203ENST00000474391 SNRPEP62304 92 aaKnown RBP6.42□□□□□ -1.38
COL4A1-203ENST00000474391 HIST3H2BBQ8N257 126 aa6.42□□□□□ -1.38
COL4A1-203ENST00000474391 XAGE1AQ9HD64 81 aa6.42□□□□□ -1.38
COL4A1-203ENST00000474391 LOC105371267A0A1B0GV96 52 aa6.41□□□□□ -1.38
COL4A1-203ENST00000474391 SERF1AO75920 110 aa6.41□□□□□ -1.38
COL4A1-203ENST00000474391 ATP5LO75964 103 aa6.41□□□□□ -1.38
COL4A1-203ENST00000474391 PMCHL1Q16048 86 aa6.41□□□□□ -1.38
COL4A1-203ENST00000474391 BAGE3Q86Y29 109 aa6.41□□□□□ -1.38
COL4A1-203ENST00000474391 ZNF22P17026 224 aaPredicted RBP6.4□□□□□ -1.38
COL4A1-203ENST00000474391 UBE2BP63146 152 aa6.4□□□□□ -1.38
COL4A1-203ENST00000474391 DIRC1Q969H9 104 aa6.4□□□□□ -1.38
COL4A1-203ENST00000474391 TP73-AS1Q9UF72 201 aa6.4□□□□□ -1.38
COL4A1-203ENST00000474391 C22orf24Q9Y442 160 aa6.4□□□□□ -1.38
COL4A1-203ENST00000474391 H0Y9J4 135 aa6.39□□□□□ -1.39
COL4A1-203ENST00000474391 HIST1H2BLQ99880 126 aa6.39□□□□□ -1.39
COL4A1-203ENST00000474391 C11orf86A6NJI1 115 aa6.38□□□□□ -1.39
COL4A1-203ENST00000474391 NUPR1O60356 82 aa6.38□□□□□ -1.39
COL4A1-203ENST00000474391 HSBP1O75506 76 aa6.38□□□□□ -1.39
COL4A1-203ENST00000474391 LBHQ53QV2 105 aaPredicted RBP6.38□□□□□ -1.39
COL4A1-203ENST00000474391 IGLV5-37A0A075B6J1 123 aa6.37□□□□□ -1.39
COL4A1-203ENST00000474391 TRAV12-1A0A0B4J245 112 aa6.37□□□□□ -1.39
COL4A1-203ENST00000474391 S100A2P29034 98 aa6.37□□□□□ -1.39
COL4A1-203ENST00000474391 MRPL55Q7Z7F7 128 aaKnown RBP6.37□□□□□ -1.39
COL4A1-203ENST00000474391 IFI27L1Q96BM0 104 aa6.36□□□□□ -1.39
COL4A1-203ENST00000474391 CHTOPQ9Y3Y2 248 aaKnown RBP6.36□□□□□ -1.39
COL4A1-203ENST00000474391 ZNF861PO60384 105 aa6.35□□□□□ -1.39
COL4A1-203ENST00000474391 KRTAP1-4P0C5Y4 121 aa6.35□□□□□ -1.39
COL4A1-203ENST00000474391 AKR1D1P51857 326 aa6.35□□□□□ -1.39
COL4A1-203ENST00000474391 COX17Q14061 63 aa6.35□□□□□ -1.39
COL4A1-203ENST00000474391 TMEM170BQ5T4T1 132 aa6.35□□□□□ -1.39
COL4A1-203ENST00000474391 SFTA2Q6UW10 78 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms