RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 IGKV3-11P04433 115 aa3.39□□□□□ -1.87
COL3A1-205ENST00000470167 COX7A1P24310 79 aa3.39□□□□□ -1.87
COL3A1-205ENST00000470167 CMC4P56277 68 aaPredicted RBP3.39□□□□□ -1.87
COL3A1-205ENST00000470167 LINC00208Q96KT6 92 aa3.39□□□□□ -1.87
COL3A1-205ENST00000470167 SMIM14Q96QK8 99 aa3.39□□□□□ -1.87
COL3A1-205ENST00000470167 GOLGA4Q13439 2230 aaKnown RBP3.39□□□□□ -1.87
COL3A1-205ENST00000470167 EP300Q09472 2414 aaPredicted RBP3.39□□□□□ -1.87
COL3A1-205ENST00000470167 FREM3P0C091 2139 aa3.38□□□□□ -1.87
COL3A1-205ENST00000470167 NOTCH1P46531 2555 aa3.38□□□□□ -1.87
COL3A1-205ENST00000470167 VPS13AQ96RL7 3174 aa3.38□□□□□ -1.87
COL3A1-205ENST00000470167 DNHD1Q96M86 4753 aa3.38□□□□□ -1.87
COL3A1-205ENST00000470167 IGLV5-45A0A087WSX0 123 aa3.38□□□□□ -1.87
COL3A1-205ENST00000470167 IGKV3D-15A0A087WSY6 115 aa3.38□□□□□ -1.87
COL3A1-205ENST00000470167 IGHV3-21A0A0B4J1V1 117 aa3.38□□□□□ -1.87
COL3A1-205ENST00000470167 NCR3O14931 201 aa3.38□□□□□ -1.87
COL3A1-205ENST00000470167 PRR4Q16378 134 aa3.38□□□□□ -1.87
COL3A1-205ENST00000470167 KPRPQ5T749 579 aaPredicted RBP3.38□□□□□ -1.87
COL3A1-205ENST00000470167 Q6ZQT0 140 aa3.38□□□□□ -1.87
COL3A1-205ENST00000470167 LINC00308Q8TCZ7 52 aa3.38□□□□□ -1.87
COL3A1-205ENST00000470167 C8orf17Q9NRJ1 99 aa3.38□□□□□ -1.87
COL3A1-205ENST00000470167 KLK9Q9UKQ9 250 aa3.38□□□□□ -1.87
COL3A1-205ENST00000470167 NACAE9PAV3 2078 aa3.38□□□□□ -1.87
COL3A1-205ENST00000470167 MYO7BQ6PIF6 2116 aa3.38□□□□□ -1.87
COL3A1-205ENST00000470167 NBEAL1Q6ZS30 2694 aa3.37□□□□□ -1.87
COL3A1-205ENST00000470167 SPTBP11277 2137 aa3.37□□□□□ -1.87
COL3A1-205ENST00000470167 CEP295Q9C0D2 2601 aa3.37□□□□□ -1.87
COL3A1-205ENST00000470167 IGLV1-44P01699 117 aa3.37□□□□□ -1.87
COL3A1-205ENST00000470167 MIR22HGQ0VDD5 57 aa3.37□□□□□ -1.87
COL3A1-205ENST00000470167 RNASE13Q5GAN3 156 aaKnown RBP3.37□□□□□ -1.87
COL3A1-205ENST00000470167 CSAG1Q6PB30 78 aa3.37□□□□□ -1.87
COL3A1-205ENST00000470167 REG3GQ6UW15 175 aa3.37□□□□□ -1.87
COL3A1-205ENST00000470167 LYPD2Q6UXB3 125 aa3.37□□□□□ -1.87
COL3A1-205ENST00000470167 Q6ZR54 194 aa3.37□□□□□ -1.87
COL3A1-205ENST00000470167 TRIOO75962 3097 aa3.37□□□□□ -1.87
COL3A1-205ENST00000470167 IGHV1-18A0A0C4DH31 117 aa3.36□□□□□ -1.87
COL3A1-205ENST00000470167 IGKV2-29A2NJV5 120 aaPredicted RBP3.36□□□□□ -1.87
COL3A1-205ENST00000470167 H3BQ85 93 aa3.36□□□□□ -1.87
COL3A1-205ENST00000470167 LECT2O14960 151 aa3.36□□□□□ -1.87
COL3A1-205ENST00000470167 NDUFA1O15239 70 aa3.36□□□□□ -1.87
COL3A1-205ENST00000470167 IGLV2-23P01705 113 aa3.36□□□□□ -1.87
COL3A1-205ENST00000470167 P0C880 135 aa3.36□□□□□ -1.87
COL3A1-205ENST00000470167 MRPS21P82921 87 aaKnown RBP3.36□□□□□ -1.87
COL3A1-205ENST00000470167 NDPQ00604 133 aa3.36□□□□□ -1.87
COL3A1-205ENST00000470167 SPINK9Q5DT21 86 aa3.36□□□□□ -1.87
COL3A1-205ENST00000470167 DPM3Q9P2X0 92 aa3.36□□□□□ -1.87
COL3A1-205ENST00000470167 CEP192Q8TEP8 1941 aa3.36□□□□□ -1.87
COL3A1-205ENST00000470167 ATRQ13535 2644 aa3.36□□□□□ -1.87
COL3A1-205ENST00000470167 FLNCQ14315 2725 aa3.35□□□□□ -1.87
COL3A1-205ENST00000470167 A0A087WYN8 130 aa3.35□□□□□ -1.87
COL3A1-205ENST00000470167 IGHV3-15A0A0B4J1V0 119 aa3.35□□□□□ -1.87
COL3A1-205ENST00000470167 A8MWP4 228 aa3.35□□□□□ -1.87
COL3A1-205ENST00000470167 K7ERS5 55 aa3.35□□□□□ -1.87
COL3A1-205ENST00000470167 PRCDQ00LT1 54 aa3.35□□□□□ -1.87
COL3A1-205ENST00000470167 LUZP6Q538Z0 58 aa3.35□□□□□ -1.87
COL3A1-205ENST00000470167 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.35□□□□□ -1.87
COL3A1-205ENST00000470167 COX7B2Q8TF08 81 aa3.35□□□□□ -1.87
COL3A1-205ENST00000470167 CAMK2N2Q96S95 79 aa3.35□□□□□ -1.87
COL3A1-205ENST00000470167 TTTY12Q9BZ98 90 aa3.35□□□□□ -1.87
COL3A1-205ENST00000470167 PLXNB1O43157 2135 aa3.35□□□□□ -1.87
COL3A1-205ENST00000470167 ESPL1Q14674 2120 aa3.35□□□□□ -1.87
COL3A1-205ENST00000470167 FN1P02751 2386 aaKnown RBP3.34□□□□□ -1.87
COL3A1-205ENST00000470167 DMDP11532 3685 aa3.34□□□□□ -1.87
COL3A1-205ENST00000470167 NF1P21359 2839 aa3.34□□□□□ -1.87
COL3A1-205ENST00000470167 LRRK2Q5S007 2527 aa3.34□□□□□ -1.87
COL3A1-205ENST00000470167 IGKV1D-37A0A075B6S9 117 aa3.34□□□□□ -1.87
COL3A1-205ENST00000470167 IGLV5-52A0A0A0MRZ9 124 aa3.34□□□□□ -1.87
COL3A1-205ENST00000470167 IGHV3-49A0A0A0MS15 119 aa3.34□□□□□ -1.87
COL3A1-205ENST00000470167 IGHV7-4-1A0A0J9YVY3 117 aa3.34□□□□□ -1.87
COL3A1-205ENST00000470167 IGHV3-53P01767 116 aa3.34□□□□□ -1.87
COL3A1-205ENST00000470167 HAMPP81172 84 aa3.34□□□□□ -1.87
COL3A1-205ENST00000470167 NNATQ16517 81 aa3.34□□□□□ -1.87
COL3A1-205ENST00000470167 JMJD1CQ15652 2540 aa3.34□□□□□ -1.88
COL3A1-205ENST00000470167 ZFHX3Q15911 3703 aa3.34□□□□□ -1.88
COL3A1-205ENST00000470167 LOC400499M0QZD8 3231 aa3.34□□□□□ -1.88
COL3A1-205ENST00000470167 FER1L5A0AVI2 2057 aa3.34□□□□□ -1.88
COL3A1-205ENST00000470167 HEATR5BQ9P2D3 2071 aa3.34□□□□□ -1.88
COL3A1-205ENST00000470167 PRRC2AP48634 2157 aaKnown RBP3.34□□□□□ -1.88
COL3A1-205ENST00000470167 FRYLO94915 3013 aa3.33□□□□□ -1.88
COL3A1-205ENST00000470167 ARHGAP32A7KAX9 2087 aa3.33□□□□□ -1.88
COL3A1-205ENST00000470167 IGHV4OR15-8A0A075B7B6 117 aa3.33□□□□□ -1.88
COL3A1-205ENST00000470167 A0A087WW49 117 aa3.33□□□□□ -1.88
COL3A1-205ENST00000470167 IGKV1-17P01599 117 aa3.33□□□□□ -1.88
COL3A1-205ENST00000470167 IGKV3-15P01624 115 aa3.33□□□□□ -1.88
COL3A1-205ENST00000470167 IGHV3-23P01764 117 aa3.33□□□□□ -1.88
COL3A1-205ENST00000470167 IGKV4-1P06312 121 aa3.33□□□□□ -1.88
COL3A1-205ENST00000470167 PI4KAP42356 2102 aa3.33□□□□□ -1.88
COL3A1-205ENST00000470167 HIGD2BQ4VC39 106 aa3.33□□□□□ -1.88
COL3A1-205ENST00000470167 FAM27BQ5VT28 67 aa3.33□□□□□ -1.88
COL3A1-205ENST00000470167 PRR34Q9NV39 138 aa3.33□□□□□ -1.88
COL3A1-205ENST00000470167 IGF2RP11717 2491 aa3.33□□□□□ -1.88
COL3A1-205ENST00000470167 MED12Q93074 2177 aa3.32□□□□□ -1.88
COL3A1-205ENST00000470167 CACNA1IQ9P0X4 2223 aa3.32□□□□□ -1.88
COL3A1-205ENST00000470167 STAB1Q9NY15 2570 aa3.32□□□□□ -1.88
COL3A1-205ENST00000470167 H3BPC8 53 aa3.32□□□□□ -1.88
COL3A1-205ENST00000470167 SPINK7P58062 85 aa3.32□□□□□ -1.88
COL3A1-205ENST00000470167 SPAG11BQ08648 103 aa3.32□□□□□ -1.88
COL3A1-205ENST00000470167 KRTAP21-3Q3LHN1 58 aa3.32□□□□□ -1.88
COL3A1-205ENST00000470167 LINC00483Q53H64 154 aa3.32□□□□□ -1.88
COL3A1-205ENST00000470167 SPAG11AQ6PDA7 123 aa3.32□□□□□ -1.88
COL3A1-205ENST00000470167 C20orf166-AS1Q96NR2 134 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms