RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 TRBV27A0A0K0K1C4 114 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 LOC105371267A0A1B0GV96 52 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 SDHAF1A6NFY7 115 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 H7C1H1 209 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 PPP1R17O96001 155 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 S100A6P06703 90 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 LINC00614P0C842 121 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 SPART-AS1P0CW21 52 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 LINC00694P0DN24 101 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 DEFB130BP0DP73 79 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 DEFB130AP0DP74 79 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 CRYBA4P53673 196 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 DAD1P61803 113 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 C12orf74Q32Q52 190 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 NTM-AS1Q6ZSK4 140 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 LINC00336Q6ZUF6 198 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 NIT1Q86X76 327 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 Q8N8P6 123 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 LINC00304Q8N9R0 145 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 CHCHD1Q96BP2 118 aaKnown RBP2.46□□□□□ -2.02
SYNE1-218ENST00000468937 PACRGQ96M98 296 aaPredicted RBP2.46□□□□□ -2.02
SYNE1-218ENST00000468937 C20orf78Q9BR46 151 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 MAP1LC3AQ9H492 121 aa2.46□□□□□ -2.02
SYNE1-218ENST00000468937 NXT2Q9NPJ8 142 aaKnown RBP2.46□□□□□ -2.02
SYNE1-218ENST00000468937 TRBV7-3A0A075B6L6 115 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 TRGV4A0A0C4DH28 118 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 IGHV1-24A0A0C4DH33 117 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 LOC389332A0A1B0GUA5 103 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 K7EMI3 77 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 HSBP1O75506 76 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 ATP5G1P05496 136 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 PMCHP20382 165 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 UBE2D3P61077 147 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 UBE2D2P62837 147 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 RHOHQ15669 191 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 PMCHL1Q16048 86 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 PDZD11Q5EBL8 140 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 RNASEKQ6P5S7 137 aaKnown RBP2.45□□□□□ -2.02
SYNE1-218ENST00000468937 CEMP1Q6PRD7 247 aaPredicted RBP2.45□□□□□ -2.02
SYNE1-218ENST00000468937 BAGE3Q86Y29 109 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 FAM19A2Q8N3H0 131 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 DNAJC30Q96LL9 226 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 HIST1H2BLQ99880 126 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 ST20Q9HBF5 79 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 PRO0255Q9UI72 69 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 HHLA3Q9XRX5 114 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 APOBP04114 4563 aaKnown RBP2.45□□□□□ -2.02
SYNE1-218ENST00000468937 HSPG2P98160 4391 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 ABCA13Q86UQ4 5058 aa2.45□□□□□ -2.02
SYNE1-218ENST00000468937 H3BNG1 76 aa2.44□□□□□ -2.02
SYNE1-218ENST00000468937 I3L3M4 83 aa2.44□□□□□ -2.02
SYNE1-218ENST00000468937 TCAPO15273 167 aa2.44□□□□□ -2.02
SYNE1-218ENST00000468937 FABP4P15090 132 aa2.44□□□□□ -2.02
SYNE1-218ENST00000468937 FCER1GP30273 86 aa2.44□□□□□ -2.02
SYNE1-218ENST00000468937 FA2HQ7L5A8 372 aa2.44□□□□□ -2.02
SYNE1-218ENST00000468937 ZNRF2Q8NHG8 242 aa2.44□□□□□ -2.02
SYNE1-218ENST00000468937 CHCHD7Q9BUK0 85 aa2.44□□□□□ -2.02
SYNE1-218ENST00000468937 A0A096LPF7 62 aa2.43□□□□□ -2.02
SYNE1-218ENST00000468937 F5H768 121 aa2.43□□□□□ -2.02
SYNE1-218ENST00000468937 HBDP02042 147 aa2.43□□□□□ -2.02
SYNE1-218ENST00000468937 C3orf79P0CE67 100 aa2.43□□□□□ -2.02
SYNE1-218ENST00000468937 HTN3P15516 51 aa2.43□□□□□ -2.02
SYNE1-218ENST00000468937 S100A2P29034 98 aa2.43□□□□□ -2.02
SYNE1-218ENST00000468937 SEC61GP60059 68 aa2.43□□□□□ -2.02
SYNE1-218ENST00000468937 ORMDL2Q53FV1 153 aa2.43□□□□□ -2.02
SYNE1-218ENST00000468937 DAZ4Q86SG3 579 aaKnown RBP2.43□□□□□ -2.02
SYNE1-218ENST00000468937 DEFB104AQ8WTQ1 72 aa2.43□□□□□ -2.02
SYNE1-218ENST00000468937 TOMM6Q96B49 74 aa2.43□□□□□ -2.02
SYNE1-218ENST00000468937 PRADC1Q9BSG0 188 aa2.43□□□□□ -2.02
SYNE1-218ENST00000468937 GTSF1LQ9H1H1 148 aa2.43□□□□□ -2.02
SYNE1-218ENST00000468937 SRRM2Q9UQ35 2752 aaKnown RBP2.43□□□□□ -2.02
SYNE1-218ENST00000468937 LRP1BQ9NZR2 4599 aa2.42□□□□□ -2.02
SYNE1-218ENST00000468937 DYNC1H1Q14204 4646 aaKnown RBP2.42□□□□□ -2.02
SYNE1-218ENST00000468937 DNAH5Q8TE73 4624 aa2.42□□□□□ -2.02
SYNE1-218ENST00000468937 DEFB131BA0A096LNP1 70 aa2.42□□□□□ -2.02
SYNE1-218ENST00000468937 TRBV6-8A0A0A6YYG3 113 aa2.42□□□□□ -2.02
SYNE1-218ENST00000468937 TRAV10A0A0B4J240 114 aa2.42□□□□□ -2.02
SYNE1-218ENST00000468937 A0A0J9YY99 117 aa2.42□□□□□ -2.02
SYNE1-218ENST00000468937 LINC01549A6NIU2 74 aa2.42□□□□□ -2.02
SYNE1-218ENST00000468937 IGIPA6NJ69 53 aa2.42□□□□□ -2.02
SYNE1-218ENST00000468937 LEPROTL1O95214 131 aa2.42□□□□□ -2.02
SYNE1-218ENST00000468937 RPL39P62891 51 aaKnown RBP2.42□□□□□ -2.02
SYNE1-218ENST00000468937 COTL1Q14019 142 aa2.42□□□□□ -2.02
SYNE1-218ENST00000468937 MRPL23Q16540 153 aaKnown RBP2.42□□□□□ -2.02
SYNE1-218ENST00000468937 C6orf226Q5I0X4 101 aa2.42□□□□□ -2.02
SYNE1-218ENST00000468937 PYY3Q5JQD4 70 aa2.42□□□□□ -2.02
SYNE1-218ENST00000468937 SPATA12Q7Z6I5 190 aa2.42□□□□□ -2.02
SYNE1-218ENST00000468937 OR10D4PQ8NGN7 298 aa2.42□□□□□ -2.02
SYNE1-218ENST00000468937 ATP6V0E2Q8NHE4 81 aa2.42□□□□□ -2.02
SYNE1-218ENST00000468937 CYSLTR1Q9Y271 337 aa2.42□□□□□ -2.02
SYNE1-218ENST00000468937 UBE2D4Q9Y2X8 147 aa2.42□□□□□ -2.02
SYNE1-218ENST00000468937 TRBV25-1A0A075B6N4 114 aa2.41□□□□□ -2.02
SYNE1-218ENST00000468937 SYS1-DBNDD2H3BUS1 97 aa2.41□□□□□ -2.02
SYNE1-218ENST00000468937 G0S2P27469 103 aa2.41□□□□□ -2.02
SYNE1-218ENST00000468937 JOSD1Q15040 202 aaPredicted RBP2.41□□□□□ -2.02
SYNE1-218ENST00000468937 TMEM97Q5BJF2 176 aa2.41□□□□□ -2.02
SYNE1-218ENST00000468937 LINC01545Q5VT33 79 aa2.41□□□□□ -2.02
SYNE1-218ENST00000468937 MRPL52Q86TS9 123 aaKnown RBP2.41□□□□□ -2.02
SYNE1-218ENST00000468937 BAALCQ8WXS3 180 aa2.41□□□□□ -2.02
SYNE1-218ENST00000468937 IFI27L1Q96BM0 104 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms