RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 C6orf226Q5I0X4 101 aa7.07□□□□□ -1.28
MSX1-202ENST00000468421 CFAP161Q6P656 301 aa7.07□□□□□ -1.28
MSX1-202ENST00000468421 EPPK1P58107 5090 aaKnown RBP7.07□□□□□ -1.28
MSX1-202ENST00000468421 KMT2AQ03164 3969 aa7.07□□□□□ -1.28
MSX1-202ENST00000468421 A0A0J9YXY3 114 aa7.06□□□□□ -1.28
MSX1-202ENST00000468421 LCE6AA0A183 80 aa7.06□□□□□ -1.28
MSX1-202ENST00000468421 C10orf25Q5T742 122 aa7.06□□□□□ -1.28
MSX1-202ENST00000468421 NTN5Q8WTR8 489 aaPredicted RBP7.06□□□□□ -1.28
MSX1-202ENST00000468421 SACSQ9NZJ4 4579 aa7.05□□□□□ -1.28
MSX1-202ENST00000468421 ZNF561-AS1K7EIQ3 104 aa7.05□□□□□ -1.28
MSX1-202ENST00000468421 C1orf134Q5TEV5 83 aa7.05□□□□□ -1.28
MSX1-202ENST00000468421 HYDINQ4G0P3 5121 aa7.05□□□□□ -1.28
MSX1-202ENST00000468421 LRCOL1A6NCL2 159 aa7.04□□□□□ -1.28
MSX1-202ENST00000468421 PCP4L1A6NKN8 68 aa7.04□□□□□ -1.28
MSX1-202ENST00000468421 CXCL5P42830 114 aa7.04□□□□□ -1.28
MSX1-202ENST00000468421 HNRNPA3P51991 378 aaKnown RBP7.04□□□□□ -1.28
MSX1-202ENST00000468421 CKS1BP61024 79 aa7.04□□□□□ -1.28
MSX1-202ENST00000468421 UNQ6190/PRO20217Q6UXQ8 127 aa7.04□□□□□ -1.28
MSX1-202ENST00000468421 SCGB1D4Q6XE38 83 aa7.04□□□□□ -1.28
MSX1-202ENST00000468421 SLPIP03973 132 aa7.03□□□□□ -1.28
MSX1-202ENST00000468421 DDTP30046 118 aa7.03□□□□□ -1.28
MSX1-202ENST00000468421 HERV-K104P63124 156 aa7.03□□□□□ -1.28
MSX1-202ENST00000468421 Q6ZRU5 148 aa7.03□□□□□ -1.28
MSX1-202ENST00000468421 C2orf48Q96LS8 159 aa7.03□□□□□ -1.28
MSX1-202ENST00000468421 CAMK2N2Q96S95 79 aa7.03□□□□□ -1.28
MSX1-202ENST00000468421 LITAFQ99732 161 aa7.03□□□□□ -1.28
MSX1-202ENST00000468421 HIGD1BQ9P298 99 aa7.03□□□□□ -1.28
MSX1-202ENST00000468421 DNAH2Q9P225 4427 aa7.02□□□□□ -1.28
MSX1-202ENST00000468421 A0A0U1RRA0 63 aa7.02□□□□□ -1.29
MSX1-202ENST00000468421 C9orf116Q5BN46 136 aaPredicted RBP7.02□□□□□ -1.29
MSX1-202ENST00000468421 C6orf48Q9UBA6 75 aa7.02□□□□□ -1.29
MSX1-202ENST00000468421 RTL8CO15255 209 aa7.01□□□□□ -1.29
MSX1-202ENST00000468421 SMIM13P0DJ93 91 aa7.01□□□□□ -1.29
MSX1-202ENST00000468421 MEIG1Q5JSS6 88 aa7.01□□□□□ -1.29
MSX1-202ENST00000468421 ADAMTSL4-AS1Q5T5F5 129 aa7.01□□□□□ -1.29
MSX1-202ENST00000468421 SFTA2Q6UW10 78 aa7.01□□□□□ -1.29
MSX1-202ENST00000468421 ERG28Q9UKR5 140 aa7.01□□□□□ -1.29
MSX1-202ENST00000468421 DNAH17Q9UFH2 4485 aa7□□□□□ -1.29
MSX1-202ENST00000468421 A0A087WTM6 91 aa7□□□□□ -1.29
MSX1-202ENST00000468421 F8WDY8 70 aa7□□□□□ -1.29
MSX1-202ENST00000468421 TIMM17BO60830 172 aa7□□□□□ -1.29
MSX1-202ENST00000468421 PFN2P35080 140 aa7□□□□□ -1.29
MSX1-202ENST00000468421 CTAG1AP78358 180 aa7□□□□□ -1.29
MSX1-202ENST00000468421 SYCNQ0VAF6 134 aa7□□□□□ -1.29
MSX1-202ENST00000468421 DAND5Q8N907 189 aa7□□□□□ -1.29
MSX1-202ENST00000468421 SPANXB1Q9NS25 103 aaPredicted RBP7□□□□□ -1.29
MSX1-202ENST00000468421 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.99□□□□□ -1.29
MSX1-202ENST00000468421 TRBV30A0A0K0K1B3 111 aa6.99□□□□□ -1.29
MSX1-202ENST00000468421 TMEM238C9JI98 176 aa6.99□□□□□ -1.29
MSX1-202ENST00000468421 TNP2Q05952 138 aa6.99□□□□□ -1.29
MSX1-202ENST00000468421 C14orf177Q52M58 125 aa6.99□□□□□ -1.29
MSX1-202ENST00000468421 CARD19Q96LW7 228 aa6.99□□□□□ -1.29
MSX1-202ENST00000468421 LINC00587B1AMM8 73 aa6.98□□□□□ -1.29
MSX1-202ENST00000468421 LINC00158P58513 81 aa6.98□□□□□ -1.29
MSX1-202ENST00000468421 MIR7-3HGQ8N6C7 128 aa6.98□□□□□ -1.29
MSX1-202ENST00000468421 Q8N814 137 aa6.98□□□□□ -1.29
MSX1-202ENST00000468421 SPANXDQ9BXN6 97 aa6.98□□□□□ -1.29
MSX1-202ENST00000468421 SPANXCQ9NY87 97 aa6.98□□□□□ -1.29
MSX1-202ENST00000468421 EIF4EBP3O60516 100 aaPredicted RBP6.97□□□□□ -1.29
MSX1-202ENST00000468421 NPC2P61916 151 aa6.97□□□□□ -1.29
MSX1-202ENST00000468421 CNBPP62633 177 aaKnown RBP6.97□□□□□ -1.29
MSX1-202ENST00000468421 HSD52Q0P140 79 aa6.97□□□□□ -1.29
MSX1-202ENST00000468421 SRSF9Q13242 221 aaKnown RBP eCLIP6.97□□□□□ -1.29
MSX1-202ENST00000468421 SOSTDC1Q6X4U4 206 aa6.97□□□□□ -1.29
MSX1-202ENST00000468421 HIST1H4GQ99525 98 aa6.97□□□□□ -1.29
MSX1-202ENST00000468421 CIRBPQ14011 172 aaKnown RBP6.96□□□□□ -1.3
MSX1-202ENST00000468421 COX17Q14061 63 aa6.96□□□□□ -1.3
MSX1-202ENST00000468421 TAL2Q16559 108 aa6.96□□□□□ -1.3
MSX1-202ENST00000468421 RNF151Q2KHN1 245 aa6.96□□□□□ -1.3
MSX1-202ENST00000468421 FRAS1Q86XX4 4008 aa6.96□□□□□ -1.3
MSX1-202ENST00000468421 GCSHP23434 173 aa6.95□□□□□ -1.3
MSX1-202ENST00000468421 FUSP35637 526 aaKnown RBP eCLIP6.95□□□□□ -1.3
MSX1-202ENST00000468421 HINT1P49773 126 aaPredicted RBP6.95□□□□□ -1.3
MSX1-202ENST00000468421 MUSTN1Q8IVN3 82 aa6.95□□□□□ -1.3
MSX1-202ENST00000468421 CEND1Q8N111 149 aa6.95□□□□□ -1.3
MSX1-202ENST00000468421 FXYD2P54710 66 aa6.94□□□□□ -1.3
MSX1-202ENST00000468421 BVES-AS1Q5T3Y7 98 aa6.94□□□□□ -1.3
MSX1-202ENST00000468421 LINC00308Q8TCZ7 52 aa6.94□□□□□ -1.3
MSX1-202ENST00000468421 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.93□□□□□ -1.3
MSX1-202ENST00000468421 NDUFC2-KCTD14E9PQ53 114 aa6.93□□□□□ -1.3
MSX1-202ENST00000468421 EREGO14944 169 aa6.93□□□□□ -1.3
MSX1-202ENST00000468421 TLX1NBP0CAT3 122 aa6.93□□□□□ -1.3
MSX1-202ENST00000468421 LINC01620Q4KN68 170 aa6.93□□□□□ -1.3
MSX1-202ENST00000468421 Q6ZRP5 223 aa6.93□□□□□ -1.3
MSX1-202ENST00000468421 Q6ZVH6 145 aa6.93□□□□□ -1.3
MSX1-202ENST00000468421 SND1-IT1Q9HBX3 110 aa6.93□□□□□ -1.3
MSX1-202ENST00000468421 IFITM1P13164 125 aa6.92□□□□□ -1.3
MSX1-202ENST00000468421 PTTG1IPP53801 180 aa6.92□□□□□ -1.3
MSX1-202ENST00000468421 RPL18AQ02543 176 aaKnown RBP6.92□□□□□ -1.3
MSX1-202ENST00000468421 GAGE2EQ4V326 116 aa6.92□□□□□ -1.3
MSX1-202ENST00000468421 C9orf163Q8N9P6 203 aa6.92□□□□□ -1.3
MSX1-202ENST00000468421 SNHG12Q9BXW3 62 aa6.92□□□□□ -1.3
MSX1-202ENST00000468421 XAGE1AQ9HD64 81 aa6.92□□□□□ -1.3
MSX1-202ENST00000468421 GAGE2DQ9UEU5 116 aa6.92□□□□□ -1.3
MSX1-202ENST00000468421 FAT2Q9NYQ8 4349 aa6.91□□□□□ -1.3
MSX1-202ENST00000468421 LOC107984640A0A0U1RRK4 108 aa6.91□□□□□ -1.3
MSX1-202ENST00000468421 A4D1N5 150 aa6.91□□□□□ -1.3
MSX1-202ENST00000468421 M0R143 59 aa6.91□□□□□ -1.3
MSX1-202ENST00000468421 BATFQ16520 125 aa6.91□□□□□ -1.3
MSX1-202ENST00000468421 Q8NDZ9 215 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms