RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 IGLV5-45A0A087WSX0 123 aa7.61□□□□□ -1.19
SQSTM1-206ENST00000466342 HNRNPA3P51991 378 aaKnown RBP7.61□□□□□ -1.19
SQSTM1-206ENST00000466342 CDKN2A-AS1Q9UH64 79 aa7.61□□□□□ -1.19
SQSTM1-206ENST00000466342 LEPROTL1O95214 131 aa7.6□□□□□ -1.19
SQSTM1-206ENST00000466342 IGLC3P0DOY3 106 aa7.6□□□□□ -1.19
SQSTM1-206ENST00000466342 SYCNQ0VAF6 134 aa7.6□□□□□ -1.19
SQSTM1-206ENST00000466342 LINC00469Q8N7U9 141 aa7.6□□□□□ -1.19
SQSTM1-206ENST00000466342 C2orf48Q96LS8 159 aa7.6□□□□□ -1.19
SQSTM1-206ENST00000466342 CARD19Q96LW7 228 aa7.6□□□□□ -1.19
SQSTM1-206ENST00000466342 CAMK2N2Q96S95 79 aa7.6□□□□□ -1.19
SQSTM1-206ENST00000466342 F8WDY8 70 aa7.59□□□□□ -1.19
SQSTM1-206ENST00000466342 RPL37AP61513 92 aaKnown RBP7.59□□□□□ -1.19
SQSTM1-206ENST00000466342 SDIM1Q6ZPB5 146 aa7.59□□□□□ -1.19
SQSTM1-206ENST00000466342 PACRGQ96M98 296 aaPredicted RBP7.59□□□□□ -1.19
SQSTM1-206ENST00000466342 TRAV12-1A0A0B4J245 112 aa7.58□□□□□ -1.2
SQSTM1-206ENST00000466342 KIAA0087Q14695 138 aa7.58□□□□□ -1.2
SQSTM1-206ENST00000466342 Q6ZRU5 148 aa7.58□□□□□ -1.2
SQSTM1-206ENST00000466342 HSPB8Q9UJY1 196 aa7.58□□□□□ -1.2
SQSTM1-206ENST00000466342 SMIM1B2RUZ4 78 aa7.57□□□□□ -1.2
SQSTM1-206ENST00000466342 COA6Q5JTJ3 125 aaKnown RBP7.57□□□□□ -1.2
SQSTM1-206ENST00000466342 PKIGQ9Y2B9 76 aa7.57□□□□□ -1.2
SQSTM1-206ENST00000466342 CHTOPQ9Y3Y2 248 aaKnown RBP7.57□□□□□ -1.2
SQSTM1-206ENST00000466342 H3BRM9 83 aa7.56□□□□□ -1.2
SQSTM1-206ENST00000466342 NDUFA1O15239 70 aa7.56□□□□□ -1.2
SQSTM1-206ENST00000466342 PRSS2P07478 247 aa7.56□□□□□ -1.2
SQSTM1-206ENST00000466342 FABP4P15090 132 aa7.56□□□□□ -1.2
SQSTM1-206ENST00000466342 ZNF22P17026 224 aaPredicted RBP7.56□□□□□ -1.2
SQSTM1-206ENST00000466342 Q8IZM0 81 aa7.56□□□□□ -1.2
SQSTM1-206ENST00000466342 MRPL35Q9NZE8 188 aaKnown RBP7.56□□□□□ -1.2
SQSTM1-206ENST00000466342 TOMM7Q9P0U1 55 aa7.56□□□□□ -1.2
SQSTM1-206ENST00000466342 C11orf86A6NJI1 115 aa7.55□□□□□ -1.2
SQSTM1-206ENST00000466342 F8VRH5 84 aa7.55□□□□□ -1.2
SQSTM1-206ENST00000466342 SPINK8P0C7L1 97 aa7.55□□□□□ -1.2
SQSTM1-206ENST00000466342 RNF151Q2KHN1 245 aa7.55□□□□□ -1.2
SQSTM1-206ENST00000466342 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.55□□□□□ -1.2
SQSTM1-206ENST00000466342 PANO1I0J062 215 aa7.54□□□□□ -1.2
SQSTM1-206ENST00000466342 CIRBPQ14011 172 aaKnown RBP7.54□□□□□ -1.2
SQSTM1-206ENST00000466342 C10orf25Q5T742 122 aa7.54□□□□□ -1.2
SQSTM1-206ENST00000466342 C2orf82Q6UX34 121 aa7.54□□□□□ -1.2
SQSTM1-206ENST00000466342 UNQ6190/PRO20217Q6UXQ8 127 aa7.54□□□□□ -1.2
SQSTM1-206ENST00000466342 A0A096LNI7 61 aa7.53□□□□□ -1.2
SQSTM1-206ENST00000466342 LOC107984640A0A0U1RRK4 108 aa7.53□□□□□ -1.2
SQSTM1-206ENST00000466342 H0Y8G0 127 aa7.53□□□□□ -1.2
SQSTM1-206ENST00000466342 CHTF8P0CG12 524 aa7.53□□□□□ -1.2
SQSTM1-206ENST00000466342 CKS1BP61024 79 aa7.53□□□□□ -1.2
SQSTM1-206ENST00000466342 ODF1Q14990 250 aa7.53□□□□□ -1.2
SQSTM1-206ENST00000466342 C6orf226Q5I0X4 101 aa7.53□□□□□ -1.2
SQSTM1-206ENST00000466342 TMEM170BQ5T4T1 132 aa7.53□□□□□ -1.2
SQSTM1-206ENST00000466342 SPACA4Q8TDM5 124 aa7.53□□□□□ -1.2
SQSTM1-206ENST00000466342 C6orf48Q9UBA6 75 aa7.53□□□□□ -1.2
SQSTM1-206ENST00000466342 IGLV5-39A0A0G2JS06 123 aa7.52□□□□□ -1.21
SQSTM1-206ENST00000466342 TRBV30A0A0K0K1B3 111 aa7.52□□□□□ -1.21
SQSTM1-206ENST00000466342 CXCL5P42830 114 aa7.52□□□□□ -1.21
SQSTM1-206ENST00000466342 COX7B2Q8TF08 81 aa7.52□□□□□ -1.21
SQSTM1-206ENST00000466342 MAP1LC3CQ9BXW4 147 aa7.52□□□□□ -1.21
SQSTM1-206ENST00000466342 IGKV2-24A0A0C4DH68 120 aa7.51□□□□□ -1.21
SQSTM1-206ENST00000466342 DPH3Q96FX2 82 aa7.51□□□□□ -1.21
SQSTM1-206ENST00000466342 TLX1NBP0CAT3 122 aa7.5□□□□□ -1.21
SQSTM1-206ENST00000466342 PTTG1IPP53801 180 aa7.5□□□□□ -1.21
SQSTM1-206ENST00000466342 RPL18AQ02543 176 aaKnown RBP7.5□□□□□ -1.21
SQSTM1-206ENST00000466342 LINC00474Q9P2X8 69 aa7.5□□□□□ -1.21
SQSTM1-206ENST00000466342 TMEM223A0PJW6 202 aa7.49□□□□□ -1.21
SQSTM1-206ENST00000466342 SYS1-DBNDD2H3BUS1 97 aa7.49□□□□□ -1.21
SQSTM1-206ENST00000466342 PLNP26678 52 aa7.49□□□□□ -1.21
SQSTM1-206ENST00000466342 GAGE2BQ13066 116 aa7.49□□□□□ -1.21
SQSTM1-206ENST00000466342 MAJINQ3KP22 176 aa7.49□□□□□ -1.21
SQSTM1-206ENST00000466342 A0A087WYN8 130 aa7.48□□□□□ -1.21
SQSTM1-206ENST00000466342 DPM2O94777 84 aa7.48□□□□□ -1.21
SQSTM1-206ENST00000466342 NDUFC2-KCTD14E9PQ53 114 aa7.47□□□□□ -1.21
SQSTM1-206ENST00000466342 IGKCP01834 107 aa7.47□□□□□ -1.21
SQSTM1-206ENST00000466342 C9orf116Q5BN46 136 aaPredicted RBP7.47□□□□□ -1.21
SQSTM1-206ENST00000466342 Q6ZRP5 223 aa7.47□□□□□ -1.21
SQSTM1-206ENST00000466342 STPG4Q8N801 248 aa7.47□□□□□ -1.21
SQSTM1-206ENST00000466342 PMCHL2Q9BQD1 86 aa7.47□□□□□ -1.21
SQSTM1-206ENST00000466342 PLAC8Q9NZF1 115 aa7.47□□□□□ -1.21
SQSTM1-206ENST00000466342 C3orf79P0CE67 100 aa7.46□□□□□ -1.22
SQSTM1-206ENST00000466342 PET117Q6UWS5 81 aa7.46□□□□□ -1.22
SQSTM1-206ENST00000466342 LPAP08519 4548 aa7.45□□□□□ -1.22
SQSTM1-206ENST00000466342 S100A6P06703 90 aa7.45□□□□□ -1.22
SQSTM1-206ENST00000466342 KRTDAPP60985 99 aa7.45□□□□□ -1.22
SQSTM1-206ENST00000466342 GAGE2EQ4V326 116 aa7.45□□□□□ -1.22
SQSTM1-206ENST00000466342 LINC01545Q5VT33 79 aa7.45□□□□□ -1.22
SQSTM1-206ENST00000466342 SFTA2Q6UW10 78 aa7.45□□□□□ -1.22
SQSTM1-206ENST00000466342 GAGE2DQ9UEU5 116 aa7.45□□□□□ -1.22
SQSTM1-206ENST00000466342 HERVK_113P61574 105 aa7.44□□□□□ -1.22
SQSTM1-206ENST00000466342 HIST3H2BBQ8N257 126 aa7.44□□□□□ -1.22
SQSTM1-206ENST00000466342 FAT4Q6V0I7 4981 aa7.44□□□□□ -1.22
SQSTM1-206ENST00000466342 S100A2P29034 98 aa7.43□□□□□ -1.22
SQSTM1-206ENST00000466342 C7orf33Q8WU49 177 aa7.43□□□□□ -1.22
SQSTM1-206ENST00000466342 ZNF625Q96I27 306 aaPredicted RBP7.43□□□□□ -1.22
SQSTM1-206ENST00000466342 LINC01600Q96MT4 127 aa7.43□□□□□ -1.22
SQSTM1-206ENST00000466342 A0A1W2PNN7 141 aa7.42□□□□□ -1.22
SQSTM1-206ENST00000466342 LEPROTO15243 131 aa7.42□□□□□ -1.22
SQSTM1-206ENST00000466342 C9orf129Q5T035 196 aaKnown RBP7.42□□□□□ -1.22
SQSTM1-206ENST00000466342 PLEKHB2Q96CS7 222 aa7.42□□□□□ -1.22
SQSTM1-206ENST00000466342 HIST1H2BLQ99880 126 aa7.42□□□□□ -1.22
SQSTM1-206ENST00000466342 C20orf202A1L168 122 aa7.41□□□□□ -1.22
SQSTM1-206ENST00000466342 COX17Q14061 63 aa7.41□□□□□ -1.22
SQSTM1-206ENST00000466342 ERG28Q9UKR5 140 aa7.41□□□□□ -1.22
SQSTM1-206ENST00000466342 MUC2Q02817 5179 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms