RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 KRTAP4-2Q9BYR5 136 aa1.04□□□□□ -2.24
USP40-211ENST00000464956 TPRKBQ9Y3C4 175 aa1.04□□□□□ -2.24
USP40-211ENST00000464956 APOA1P02647 267 aa1.03□□□□□ -2.24
USP40-211ENST00000464956 AKAIN1P0CW23 69 aa1.03□□□□□ -2.24
USP40-211ENST00000464956 AQP4P55087 323 aa1.03□□□□□ -2.24
USP40-211ENST00000464956 RAB5BP61020 215 aa1.03□□□□□ -2.24
USP40-211ENST00000464956 UBE2G1P62253 170 aa1.03□□□□□ -2.24
USP40-211ENST00000464956 S100A12P80511 92 aa1.03□□□□□ -2.24
USP40-211ENST00000464956 SOSTDC1Q6X4U4 206 aa1.03□□□□□ -2.24
USP40-211ENST00000464956 NKX6-2Q9C056 277 aaPredicted RBP1.03□□□□□ -2.24
USP40-211ENST00000464956 RNASE7Q9H1E1 156 aaKnown RBP1.03□□□□□ -2.24
USP40-211ENST00000464956 PRO1933Q9H354 126 aa1.03□□□□□ -2.24
USP40-211ENST00000464956 ST20Q9HBF5 79 aa1.03□□□□□ -2.24
USP40-211ENST00000464956 MCUBQ9NWR8 336 aa1.03□□□□□ -2.24
USP40-211ENST00000464956 LAMTOR3Q9UHA4 124 aa1.03□□□□□ -2.24
USP40-211ENST00000464956 TRBV6-5A0A0K0K1A5 114 aa1.02□□□□□ -2.25
USP40-211ENST00000464956 KRTAP16-1A8MUX0 517 aa1.02□□□□□ -2.25
USP40-211ENST00000464956 F2Z2F3 143 aa1.02□□□□□ -2.25
USP40-211ENST00000464956 PEX7O00628 323 aa1.02□□□□□ -2.25
USP40-211ENST00000464956 SFT2D2O95562 160 aa1.02□□□□□ -2.25
USP40-211ENST00000464956 GNAO1P09471 354 aa1.02□□□□□ -2.25
USP40-211ENST00000464956 PVALBP20472 110 aaPredicted RBP1.02□□□□□ -2.25
USP40-211ENST00000464956 SPRR1AP35321 89 aa1.02□□□□□ -2.25
USP40-211ENST00000464956 DEFA1P59665 94 aa1.02□□□□□ -2.25
USP40-211ENST00000464956 RAB14P61106 215 aa1.02□□□□□ -2.25
USP40-211ENST00000464956 SSBP1Q04837 148 aaKnown RBP1.02□□□□□ -2.25
USP40-211ENST00000464956 RAB32Q13637 225 aa1.02□□□□□ -2.25
USP40-211ENST00000464956 ALKAL2Q6UX46 152 aa1.02□□□□□ -2.25
USP40-211ENST00000464956 KRTAP5-2Q701N4 177 aa1.02□□□□□ -2.25
USP40-211ENST00000464956 SMIM15Q7Z3B0 74 aa1.02□□□□□ -2.25
USP40-211ENST00000464956 FMC1Q96HJ9 113 aa1.02□□□□□ -2.25
USP40-211ENST00000464956 RBM38Q9H0Z9 239 aaKnown RBP1.02□□□□□ -2.25
USP40-211ENST00000464956 SPANXA1Q9NS26 97 aa1.02□□□□□ -2.25
USP40-211ENST00000464956 RAB26Q9ULW5 256 aa1.02□□□□□ -2.25
USP40-211ENST00000464956 TRBV27A0A0K0K1C4 114 aa1.01□□□□□ -2.25
USP40-211ENST00000464956 ANKRD20A5PA0PJZ0 165 aa1.01□□□□□ -2.25
USP40-211ENST00000464956 FAM25AB3EWG3 89 aa1.01□□□□□ -2.25
USP40-211ENST00000464956 FAM25CB3EWG5 89 aa1.01□□□□□ -2.25
USP40-211ENST00000464956 FAM25GB3EWG6 89 aa1.01□□□□□ -2.25
USP40-211ENST00000464956 HMGB3O15347 200 aaKnown RBP1.01□□□□□ -2.25
USP40-211ENST00000464956 LTAP01374 205 aa1.01□□□□□ -2.25
USP40-211ENST00000464956 RAB5AP20339 215 aa1.01□□□□□ -2.25
USP40-211ENST00000464956 GCHFRP30047 84 aa1.01□□□□□ -2.25
USP40-211ENST00000464956 AKR1D1P51857 326 aa1.01□□□□□ -2.25
USP40-211ENST00000464956 NDUFA6P56556 154 aa1.01□□□□□ -2.25
USP40-211ENST00000464956 KRTAP12-4P60329 112 aa1.01□□□□□ -2.25
USP40-211ENST00000464956 SUMO2P61956 95 aaKnown RBP1.01□□□□□ -2.25
USP40-211ENST00000464956 MRPS36P82909 103 aaKnown RBP1.01□□□□□ -2.25
USP40-211ENST00000464956 PP632Q6XCG6 107 aa1.01□□□□□ -2.25
USP40-211ENST00000464956 ST20-AS1Q8NBB2 130 aa1.01□□□□□ -2.25
USP40-211ENST00000464956 HIST1H2BAQ96A08 127 aa1.01□□□□□ -2.25
USP40-211ENST00000464956 WDR61Q9GZS3 305 aaKnown RBP1.01□□□□□ -2.25
USP40-211ENST00000464956 KCNQ1DNQ9H478 68 aa1.01□□□□□ -2.25
USP40-211ENST00000464956 TMEM167BQ9NRX6 74 aa1.01□□□□□ -2.25
USP40-211ENST00000464956 LSM5Q9Y4Y9 91 aaKnown RBP1.01□□□□□ -2.25
USP40-211ENST00000464956 A0A1W2PRE2 83 aa1□□□□□ -2.25
USP40-211ENST00000464956 IGSF23A1L1A6 192 aa1□□□□□ -2.25
USP40-211ENST00000464956 XKRY2A2RUG3 117 aa1□□□□□ -2.25
USP40-211ENST00000464956 C5orf52A6NGY3 159 aa1□□□□□ -2.25
USP40-211ENST00000464956 B5MCH6 92 aa1□□□□□ -2.25
USP40-211ENST00000464956 H0YAA0 97 aa1□□□□□ -2.25
USP40-211ENST00000464956 VCYO14598 125 aa1□□□□□ -2.25
USP40-211ENST00000464956 IGLC6P0CF74 106 aa1□□□□□ -2.25
USP40-211ENST00000464956 KRTAP10-12P60413 245 aa1□□□□□ -2.25
USP40-211ENST00000464956 JOSD1Q15040 202 aaPredicted RBP1□□□□□ -2.25
USP40-211ENST00000464956 TWIST1Q15672 202 aa1□□□□□ -2.25
USP40-211ENST00000464956 Q6ZRX8 168 aa1□□□□□ -2.25
USP40-211ENST00000464956 MCFD2Q8NI22 146 aa1□□□□□ -2.25
USP40-211ENST00000464956 Q9BRP9 147 aa1□□□□□ -2.25
USP40-211ENST00000464956 SND1-IT1Q9HBX3 110 aa1□□□□□ -2.25
USP40-211ENST00000464956 PPP1R2P9O14990 202 aa0.99□□□□□ -2.25
USP40-211ENST00000464956 ATP5HO75947 161 aa0.99□□□□□ -2.25
USP40-211ENST00000464956 ATP5LO75964 103 aa0.99□□□□□ -2.25
USP40-211ENST00000464956 PFN2P35080 140 aa0.99□□□□□ -2.25
USP40-211ENST00000464956 POLR2KP53803 58 aaKnown RBP0.99□□□□□ -2.25
USP40-211ENST00000464956 MRPS10P82664 201 aaKnown RBP0.99□□□□□ -2.25
USP40-211ENST00000464956 KLKP1Q107X0 134 aa0.99□□□□□ -2.25
USP40-211ENST00000464956 H1FX-AS1Q4G0G2 97 aa0.99□□□□□ -2.25
USP40-211ENST00000464956 WFDC13Q8IUB5 93 aa0.99□□□□□ -2.25
USP40-211ENST00000464956 PRR15Q8IV56 129 aa0.99□□□□□ -2.25
USP40-211ENST00000464956 SCGB1C1Q8TD33 95 aa0.99□□□□□ -2.25
USP40-211ENST00000464956 CNBD2Q96M20 576 aa0.99□□□□□ -2.25
USP40-211ENST00000464956 C2orf88Q9BSF0 95 aa0.99□□□□□ -2.25
USP40-211ENST00000464956 TMEM191AQ9H0A3 160 aa0.99□□□□□ -2.25
USP40-211ENST00000464956 VCX3BQ9H321 246 aa0.99□□□□□ -2.25
USP40-211ENST00000464956 VCX3AQ9NNX9 186 aa0.99□□□□□ -2.25
USP40-211ENST00000464956 INMT-MINDY4F8WBC2 141 aa0.98□□□□□ -2.25
USP40-211ENST00000464956 TCAPO15273 167 aa0.98□□□□□ -2.25
USP40-211ENST00000464956 CXorf1O96002 111 aa0.98□□□□□ -2.25
USP40-211ENST00000464956 STAG3L2P0CL84 134 aa0.98□□□□□ -2.25
USP40-211ENST00000464956 STAG3L3P0CL85 134 aa0.98□□□□□ -2.25
USP40-211ENST00000464956 SPRR1BP22528 89 aa0.98□□□□□ -2.25
USP40-211ENST00000464956 FAUP35544 74 aaKnown RBP0.98□□□□□ -2.25
USP40-211ENST00000464956 AKR1C3P42330 323 aa0.98□□□□□ -2.25
USP40-211ENST00000464956 CDC34P49427 236 aaPredicted RBP0.98□□□□□ -2.25
USP40-211ENST00000464956 SPINK7P58062 85 aa0.98□□□□□ -2.25
USP40-211ENST00000464956 ZNF345Q14585 488 aa0.98□□□□□ -2.25
USP40-211ENST00000464956 TEX43Q6ZNM6 134 aa0.98□□□□□ -2.25
USP40-211ENST00000464956 TMUB2Q71RG4 321 aa0.98□□□□□ -2.25
USP40-211ENST00000464956 STOML3Q8TAV4 291 aa0.98□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms