RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 A6NJY4 79 aa7.93□□□□□ -1.14
USP54-209ENST00000464635 IFITM1P13164 125 aa7.93□□□□□ -1.14
USP54-209ENST00000464635 CXCL5P42830 114 aa7.93□□□□□ -1.14
USP54-209ENST00000464635 C1orf134Q5TEV5 83 aa7.93□□□□□ -1.14
USP54-209ENST00000464635 Q8IZM0 81 aa7.93□□□□□ -1.14
USP54-209ENST00000464635 ZNF625Q96I27 306 aaPredicted RBP7.93□□□□□ -1.14
USP54-209ENST00000464635 HIST1H4GQ99525 98 aa7.93□□□□□ -1.14
USP54-209ENST00000464635 SPANXDQ9BXN6 97 aa7.93□□□□□ -1.14
USP54-209ENST00000464635 SPANXCQ9NY87 97 aa7.93□□□□□ -1.14
USP54-209ENST00000464635 LINC00588Q9Y4M8 146 aa7.93□□□□□ -1.14
USP54-209ENST00000464635 APOMO95445 188 aa7.92□□□□□ -1.14
USP54-209ENST00000464635 ENHOQ6UWT2 76 aa7.92□□□□□ -1.14
USP54-209ENST00000464635 C10orf126Q8N4M7 172 aa7.92□□□□□ -1.14
USP54-209ENST00000464635 COX7B2Q8TF08 81 aa7.92□□□□□ -1.14
USP54-209ENST00000464635 CHCHD10Q8WYQ3 142 aaPredicted RBP7.92□□□□□ -1.14
USP54-209ENST00000464635 NBDYA0A0U1RRE5 68 aa7.91□□□□□ -1.14
USP54-209ENST00000464635 A0A1B0GWB2 263 aa7.91□□□□□ -1.14
USP54-209ENST00000464635 F8WDY8 70 aa7.91□□□□□ -1.14
USP54-209ENST00000464635 COX7A2LO14548 114 aa7.91□□□□□ -1.14
USP54-209ENST00000464635 CRPP02741 224 aa7.91□□□□□ -1.14
USP54-209ENST00000464635 TNP2Q05952 138 aa7.91□□□□□ -1.14
USP54-209ENST00000464635 SRSF9Q13242 221 aaKnown RBP eCLIP7.91□□□□□ -1.14
USP54-209ENST00000464635 KLK12Q9UKR0 248 aa7.91□□□□□ -1.14
USP54-209ENST00000464635 IGHV3-64A0A075B6Q5 118 aa7.9□□□□□ -1.14
USP54-209ENST00000464635 IGHV3-30P01768 117 aa7.9□□□□□ -1.14
USP54-209ENST00000464635 IGHV3-30-5P0DP03 117 aa7.9□□□□□ -1.14
USP54-209ENST00000464635 FOXI1Q12951 378 aa7.9□□□□□ -1.14
USP54-209ENST00000464635 WFDC10BQ8IUB3 73 aa7.9□□□□□ -1.14
USP54-209ENST00000464635 RYR1P21817 5038 aa7.9□□□□□ -1.15
USP54-209ENST00000464635 IBA57-AS1B1ANH7 110 aa7.89□□□□□ -1.15
USP54-209ENST00000464635 XCL1P47992 114 aa7.89□□□□□ -1.15
USP54-209ENST00000464635 RPL24P83731 157 aaKnown RBP7.89□□□□□ -1.15
USP54-209ENST00000464635 LITAFQ99732 161 aa7.89□□□□□ -1.15
USP54-209ENST00000464635 KRTAP1-5Q9BYS1 174 aa7.89□□□□□ -1.15
USP54-209ENST00000464635 Q9H8V8 135 aa7.89□□□□□ -1.15
USP54-209ENST00000464635 IGKV3OR2-268A0A0C4DH90 116 aa7.88□□□□□ -1.15
USP54-209ENST00000464635 SMIM13P0DJ93 91 aa7.88□□□□□ -1.15
USP54-209ENST00000464635 COX17Q14061 63 aa7.88□□□□□ -1.15
USP54-209ENST00000464635 C5orf38Q86SI9 138 aa7.88□□□□□ -1.15
USP54-209ENST00000464635 C6orf223Q8N319 242 aa7.88□□□□□ -1.15
USP54-209ENST00000464635 COX11Q9Y6N1 276 aa7.88□□□□□ -1.15
USP54-209ENST00000464635 FXYD2P54710 66 aa7.87□□□□□ -1.15
USP54-209ENST00000464635 KIAA0087Q14695 138 aa7.87□□□□□ -1.15
USP54-209ENST00000464635 BATFQ16520 125 aa7.87□□□□□ -1.15
USP54-209ENST00000464635 C6orf226Q5I0X4 101 aa7.87□□□□□ -1.15
USP54-209ENST00000464635 KRTAP26-1Q6PEX3 210 aa7.87□□□□□ -1.15
USP54-209ENST00000464635 UBE2WQ96B02 151 aa7.87□□□□□ -1.15
USP54-209ENST00000464635 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.86□□□□□ -1.15
USP54-209ENST00000464635 IGHV3-33P01772 117 aa7.86□□□□□ -1.15
USP54-209ENST00000464635 PRSS2P07478 247 aa7.86□□□□□ -1.15
USP54-209ENST00000464635 MALP21145 153 aa7.86□□□□□ -1.15
USP54-209ENST00000464635 RMI2Q96E14 147 aa7.86□□□□□ -1.15
USP54-209ENST00000464635 ABCA13Q86UQ4 5058 aa7.85□□□□□ -1.15
USP54-209ENST00000464635 GVQW2A0A096LPI5 108 aaPredicted RBP7.85□□□□□ -1.15
USP54-209ENST00000464635 LOC107984156A0A0G2JMH3 177 aa7.85□□□□□ -1.15
USP54-209ENST00000464635 GAGE12HA6NDE8 117 aa7.85□□□□□ -1.15
USP54-209ENST00000464635 TAX1BP3O14907 124 aa7.85□□□□□ -1.15
USP54-209ENST00000464635 ARL17AQ8IVW1 177 aa7.85□□□□□ -1.15
USP54-209ENST00000464635 Q8N3U1 123 aa7.85□□□□□ -1.15
USP54-209ENST00000464635 C1orf43Q9BWL3 253 aa7.85□□□□□ -1.15
USP54-209ENST00000464635 HSPG2P98160 4391 aa7.85□□□□□ -1.15
USP54-209ENST00000464635 A0A0B4J2C4 111 aa7.84□□□□□ -1.15
USP54-209ENST00000464635 MEIG1Q5JSS6 88 aa7.84□□□□□ -1.15
USP54-209ENST00000464635 CFAP161Q6P656 301 aa7.84□□□□□ -1.15
USP54-209ENST00000464635 CLPSL2Q6UWE3 100 aa7.84□□□□□ -1.15
USP54-209ENST00000464635 LRP1BQ9NZR2 4599 aa7.84□□□□□ -1.15
USP54-209ENST00000464635 C9orf118A6NHY6 69 aa7.83□□□□□ -1.16
USP54-209ENST00000464635 C16orf90A8MZG2 172 aa7.83□□□□□ -1.16
USP54-209ENST00000464635 ADAMTSL4-AS1Q5T5F5 129 aa7.83□□□□□ -1.16
USP54-209ENST00000464635 MUSTN1Q8IVN3 82 aa7.83□□□□□ -1.16
USP54-209ENST00000464635 C2orf48Q96LS8 159 aa7.83□□□□□ -1.16
USP54-209ENST00000464635 KRTAP4-5Q9BYR2 181 aa7.83□□□□□ -1.16
USP54-209ENST00000464635 IGLV10-54A0A075B6I4 117 aa7.82□□□□□ -1.16
USP54-209ENST00000464635 CKS1BP61024 79 aa7.82□□□□□ -1.16
USP54-209ENST00000464635 TOMM7Q9P0U1 55 aa7.82□□□□□ -1.16
USP54-209ENST00000464635 TTC32Q5I0X7 151 aa7.81□□□□□ -1.16
USP54-209ENST00000464635 LINC00308Q8TCZ7 52 aa7.81□□□□□ -1.16
USP54-209ENST00000464635 NHP2Q9NX24 153 aaKnown RBP7.81□□□□□ -1.16
USP54-209ENST00000464635 APOBP04114 4563 aaKnown RBP7.81□□□□□ -1.16
USP54-209ENST00000464635 TRBV30A0A0K0K1B3 111 aa7.8□□□□□ -1.16
USP54-209ENST00000464635 CFC1BP0CG36 223 aa7.8□□□□□ -1.16
USP54-209ENST00000464635 CFC1P0CG37 223 aa7.8□□□□□ -1.16
USP54-209ENST00000464635 NTN5Q8WTR8 489 aaPredicted RBP7.8□□□□□ -1.16
USP54-209ENST00000464635 ERG28Q9UKR5 140 aa7.8□□□□□ -1.16
USP54-209ENST00000464635 A0A1B0GV90 55 aa7.79□□□□□ -1.16
USP54-209ENST00000464635 A4D1N5 150 aa7.79□□□□□ -1.16
USP54-209ENST00000464635 KRTAP10-2P60368 255 aa7.79□□□□□ -1.16
USP54-209ENST00000464635 SPAG11BQ08648 103 aa7.79□□□□□ -1.16
USP54-209ENST00000464635 RNF151Q2KHN1 245 aa7.79□□□□□ -1.16
USP54-209ENST00000464635 PRO1854Q9UHT4 67 aa7.79□□□□□ -1.16
USP54-209ENST00000464635 Q6ZRN7 208 aaPredicted RBP7.78□□□□□ -1.16
USP54-209ENST00000464635 DNAH5Q8TE73 4624 aa7.77□□□□□ -1.16
USP54-209ENST00000464635 IGKV2D-24A0A075B6R9 120 aa7.77□□□□□ -1.17
USP54-209ENST00000464635 ZNF561-AS1K7EIQ3 104 aa7.77□□□□□ -1.17
USP54-209ENST00000464635 NDUFC2O95298 119 aa7.77□□□□□ -1.17
USP54-209ENST00000464635 CDK2AP2O75956 126 aa7.76□□□□□ -1.17
USP54-209ENST00000464635 LINC00158P58513 81 aa7.76□□□□□ -1.17
USP54-209ENST00000464635 LYRM7Q5U5X0 104 aa7.76□□□□□ -1.17
USP54-209ENST00000464635 MIR7-3HGQ8N6C7 128 aa7.76□□□□□ -1.17
USP54-209ENST00000464635 FUSP35637 526 aaKnown RBP eCLIP7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms