RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 TOMM7Q9P0U1 55 aa8.1□□□□□ -1.11
HDAC4-207ENST00000461113 CDKN2A-AS1Q9UH64 79 aa8.1□□□□□ -1.11
HDAC4-207ENST00000461113 CHTOPQ9Y3Y2 248 aaKnown RBP8.1□□□□□ -1.11
HDAC4-207ENST00000461113 FAT3Q8TDW7 4589 aa8.1□□□□□ -1.11
HDAC4-207ENST00000461113 TRAV12-1A0A0B4J245 112 aa8.09□□□□□ -1.11
HDAC4-207ENST00000461113 FABP4P15090 132 aa8.09□□□□□ -1.11
HDAC4-207ENST00000461113 CKS1BP61024 79 aa8.09□□□□□ -1.11
HDAC4-207ENST00000461113 LINC01620Q4KN68 170 aa8.09□□□□□ -1.11
HDAC4-207ENST00000461113 C6orf226Q5I0X4 101 aa8.09□□□□□ -1.11
HDAC4-207ENST00000461113 LINC00526Q96FQ7 95 aa8.09□□□□□ -1.11
HDAC4-207ENST00000461113 CHAC1Q9BUX1 264 aa8.09□□□□□ -1.11
HDAC4-207ENST00000461113 MAP1LC3CQ9BXW4 147 aa8.09□□□□□ -1.11
HDAC4-207ENST00000461113 H0Y8G0 127 aa8.08□□□□□ -1.12
HDAC4-207ENST00000461113 IGLC3P0DOY3 106 aa8.08□□□□□ -1.12
HDAC4-207ENST00000461113 SLPIP03973 132 aa8.07□□□□□ -1.12
HDAC4-207ENST00000461113 TMEM170BQ5T4T1 132 aa8.07□□□□□ -1.12
HDAC4-207ENST00000461113 IGLV5-45A0A087WSX0 123 aa8.06□□□□□ -1.12
HDAC4-207ENST00000461113 F8VRH5 84 aa8.06□□□□□ -1.12
HDAC4-207ENST00000461113 NUPR1O60356 82 aa8.06□□□□□ -1.12
HDAC4-207ENST00000461113 CXCL5P42830 114 aa8.06□□□□□ -1.12
HDAC4-207ENST00000461113 LINC00310P59036 64 aa8.06□□□□□ -1.12
HDAC4-207ENST00000461113 RNF151Q2KHN1 245 aa8.06□□□□□ -1.12
HDAC4-207ENST00000461113 Q6ZRU5 148 aa8.06□□□□□ -1.12
HDAC4-207ENST00000461113 Q8IZM0 81 aa8.06□□□□□ -1.12
HDAC4-207ENST00000461113 MRPL35Q9NZE8 188 aaKnown RBP8.06□□□□□ -1.12
HDAC4-207ENST00000461113 LINC00474Q9P2X8 69 aa8.06□□□□□ -1.12
HDAC4-207ENST00000461113 LRP2P98164 4655 aa8.06□□□□□ -1.12
HDAC4-207ENST00000461113 LOC107984640A0A0U1RRK4 108 aa8.05□□□□□ -1.12
HDAC4-207ENST00000461113 S100A6P06703 90 aa8.05□□□□□ -1.12
HDAC4-207ENST00000461113 SDIM1Q6ZPB5 146 aa8.05□□□□□ -1.12
HDAC4-207ENST00000461113 DNAH8Q96JB1 4490 aa8.04□□□□□ -1.12
HDAC4-207ENST00000461113 SPINK8P0C7L1 97 aa8.04□□□□□ -1.12
HDAC4-207ENST00000461113 COA6Q5JTJ3 125 aaKnown RBP8.04□□□□□ -1.12
HDAC4-207ENST00000461113 COX7B2Q8TF08 81 aa8.04□□□□□ -1.12
HDAC4-207ENST00000461113 TRBV30A0A0K0K1B3 111 aa8.03□□□□□ -1.12
HDAC4-207ENST00000461113 C11orf86A6NJI1 115 aa8.03□□□□□ -1.12
HDAC4-207ENST00000461113 SMIM1B2RUZ4 78 aa8.03□□□□□ -1.12
HDAC4-207ENST00000461113 ZNF22P17026 224 aaPredicted RBP8.03□□□□□ -1.12
HDAC4-207ENST00000461113 PLNP26678 52 aa8.03□□□□□ -1.12
HDAC4-207ENST00000461113 IGKV2-24A0A0C4DH68 120 aa8.02□□□□□ -1.13
HDAC4-207ENST00000461113 S100A2P29034 98 aa8.02□□□□□ -1.13
HDAC4-207ENST00000461113 RPL18AQ02543 176 aaKnown RBP8.02□□□□□ -1.13
HDAC4-207ENST00000461113 GAGE2BQ13066 116 aa8.02□□□□□ -1.13
HDAC4-207ENST00000461113 KIAA0087Q14695 138 aa8.02□□□□□ -1.13
HDAC4-207ENST00000461113 SFTA2Q6UW10 78 aa8.02□□□□□ -1.13
HDAC4-207ENST00000461113 UNQ6190/PRO20217Q6UXQ8 127 aa8.02□□□□□ -1.13
HDAC4-207ENST00000461113 Q6ZSA8 131 aa8.02□□□□□ -1.13
HDAC4-207ENST00000461113 DPM2O94777 84 aa8.01□□□□□ -1.13
HDAC4-207ENST00000461113 HERVK_113P61574 105 aa8.01□□□□□ -1.13
HDAC4-207ENST00000461113 ODF1Q14990 250 aa8.01□□□□□ -1.13
HDAC4-207ENST00000461113 MAJINQ3KP22 176 aa8.01□□□□□ -1.13
HDAC4-207ENST00000461113 C2orf82Q6UX34 121 aa8.01□□□□□ -1.13
HDAC4-207ENST00000461113 C20orf202A1L168 122 aa8□□□□□ -1.13
HDAC4-207ENST00000461113 KRTAP10-4P60372 401 aaPredicted RBP8□□□□□ -1.13
HDAC4-207ENST00000461113 SYS1-DBNDD2H3BUS1 97 aa7.99□□□□□ -1.13
HDAC4-207ENST00000461113 IGKCP01834 107 aa7.99□□□□□ -1.13
HDAC4-207ENST00000461113 C10orf25Q5T742 122 aa7.99□□□□□ -1.13
HDAC4-207ENST00000461113 PET117Q6UWS5 81 aa7.99□□□□□ -1.13
HDAC4-207ENST00000461113 SCXQ7RTU7 201 aa7.99□□□□□ -1.13
HDAC4-207ENST00000461113 C6orf48Q9UBA6 75 aa7.99□□□□□ -1.13
HDAC4-207ENST00000461113 IGLV5-39A0A0G2JS06 123 aa7.98□□□□□ -1.13
HDAC4-207ENST00000461113 CHTF8P0CG12 524 aa7.98□□□□□ -1.13
HDAC4-207ENST00000461113 AKR1D1P51857 326 aa7.98□□□□□ -1.13
HDAC4-207ENST00000461113 PTTG1IPP53801 180 aa7.98□□□□□ -1.13
HDAC4-207ENST00000461113 KRTDAPP60985 99 aa7.98□□□□□ -1.13
HDAC4-207ENST00000461113 CIRBP-AS1Q8TBR5 109 aa7.98□□□□□ -1.13
HDAC4-207ENST00000461113 SPACA4Q8TDM5 124 aa7.98□□□□□ -1.13
HDAC4-207ENST00000461113 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.98□□□□□ -1.13
HDAC4-207ENST00000461113 A0A096LNI7 61 aa7.97□□□□□ -1.13
HDAC4-207ENST00000461113 TMEM223A0PJW6 202 aa7.97□□□□□ -1.13
HDAC4-207ENST00000461113 NDUFC2-KCTD14E9PQ53 114 aa7.97□□□□□ -1.13
HDAC4-207ENST00000461113 TLX1NBP0CAT3 122 aa7.97□□□□□ -1.13
HDAC4-207ENST00000461113 CIRBPQ14011 172 aaKnown RBP7.97□□□□□ -1.13
HDAC4-207ENST00000461113 GAGE2EQ4V326 116 aa7.97□□□□□ -1.13
HDAC4-207ENST00000461113 STPG4Q8N801 248 aa7.97□□□□□ -1.13
HDAC4-207ENST00000461113 GAGE2DQ9UEU5 116 aa7.97□□□□□ -1.13
HDAC4-207ENST00000461113 PKHD1L1Q86WI1 4243 aa7.97□□□□□ -1.13
HDAC4-207ENST00000461113 A0A087WYN8 130 aa7.96□□□□□ -1.14
HDAC4-207ENST00000461113 PLEKHB2Q96CS7 222 aa7.96□□□□□ -1.14
HDAC4-207ENST00000461113 PMCHL2Q9BQD1 86 aa7.96□□□□□ -1.14
HDAC4-207ENST00000461113 C7orf33Q8WU49 177 aa7.95□□□□□ -1.14
HDAC4-207ENST00000461113 LINC00587B1AMM8 73 aa7.94□□□□□ -1.14
HDAC4-207ENST00000461113 C3orf79P0CE67 100 aa7.94□□□□□ -1.14
HDAC4-207ENST00000461113 C9orf116Q5BN46 136 aaPredicted RBP7.94□□□□□ -1.14
HDAC4-207ENST00000461113 LINC01545Q5VT33 79 aa7.94□□□□□ -1.14
HDAC4-207ENST00000461113 KRTAP9-2Q9BYQ4 174 aa7.94□□□□□ -1.14
HDAC4-207ENST00000461113 PLAC8Q9NZF1 115 aa7.94□□□□□ -1.14
HDAC4-207ENST00000461113 MYMXA0A1B0GTQ4 84 aa7.93□□□□□ -1.14
HDAC4-207ENST00000461113 PANO1I0J062 215 aa7.93□□□□□ -1.14
HDAC4-207ENST00000461113 LEPROTO15243 131 aa7.93□□□□□ -1.14
HDAC4-207ENST00000461113 MT1HL1P0DM35 61 aa7.93□□□□□ -1.14
HDAC4-207ENST00000461113 LGALS3P17931 250 aaKnown RBP7.93□□□□□ -1.14
HDAC4-207ENST00000461113 HERV-K104P63124 156 aa7.93□□□□□ -1.14
HDAC4-207ENST00000461113 Q6ZRP5 223 aa7.93□□□□□ -1.14
HDAC4-207ENST00000461113 HIST3H2BBQ8N257 126 aa7.93□□□□□ -1.14
HDAC4-207ENST00000461113 COX17Q14061 63 aa7.92□□□□□ -1.14
HDAC4-207ENST00000461113 PFN2P35080 140 aa7.91□□□□□ -1.14
HDAC4-207ENST00000461113 SNRPEP62304 92 aaKnown RBP7.91□□□□□ -1.14
HDAC4-207ENST00000461113 MEIG1Q5JSS6 88 aa7.91□□□□□ -1.14
HDAC4-207ENST00000461113 ZNF625Q96I27 306 aaPredicted RBP7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms