RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 SLPIP03973 132 aa7.53□□□□□ -1.2
SCN9A-204ENST00000452182 SPINK8P0C7L1 97 aa7.53□□□□□ -1.2
SCN9A-204ENST00000452182 IGLV5-52A0A0A0MRZ9 124 aa7.52□□□□□ -1.2
SCN9A-204ENST00000452182 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.52□□□□□ -1.2
SCN9A-204ENST00000452182 LINC00526Q96FQ7 95 aa7.52□□□□□ -1.2
SCN9A-204ENST00000452182 PRSS2P07478 247 aa7.52□□□□□ -1.21
SCN9A-204ENST00000452182 C6orf226Q5I0X4 101 aa7.52□□□□□ -1.21
SCN9A-204ENST00000452182 C9orf163Q8N9P6 203 aa7.52□□□□□ -1.21
SCN9A-204ENST00000452182 COX7B2Q8TF08 81 aa7.52□□□□□ -1.21
SCN9A-204ENST00000452182 NDUFA1O15239 70 aa7.51□□□□□ -1.21
SCN9A-204ENST00000452182 CXCL5P42830 114 aa7.51□□□□□ -1.21
SCN9A-204ENST00000452182 SYCNQ0VAF6 134 aa7.51□□□□□ -1.21
SCN9A-204ENST00000452182 CAMK2N2Q96S95 79 aa7.51□□□□□ -1.21
SCN9A-204ENST00000452182 TOMM7Q9P0U1 55 aa7.51□□□□□ -1.21
SCN9A-204ENST00000452182 PKHD1P08F94 4074 aa7.51□□□□□ -1.21
SCN9A-204ENST00000452182 DNAH5Q8TE73 4624 aa7.51□□□□□ -1.21
SCN9A-204ENST00000452182 HERVK_113P61574 105 aa7.5□□□□□ -1.21
SCN9A-204ENST00000452182 CARD19Q96LW7 228 aa7.5□□□□□ -1.21
SCN9A-204ENST00000452182 CKS1BP61024 79 aa7.49□□□□□ -1.21
SCN9A-204ENST00000452182 RNF151Q2KHN1 245 aa7.49□□□□□ -1.21
SCN9A-204ENST00000452182 SFTA2Q6UW10 78 aa7.49□□□□□ -1.21
SCN9A-204ENST00000452182 Q6ZRU5 148 aa7.49□□□□□ -1.21
SCN9A-204ENST00000452182 FUSP35637 526 aaKnown RBP eCLIP7.49□□□□□ -1.21
SCN9A-204ENST00000452182 TRBV30A0A0K0K1B3 111 aa7.48□□□□□ -1.21
SCN9A-204ENST00000452182 E9PLD3 99 aa7.48□□□□□ -1.21
SCN9A-204ENST00000452182 LEPROTO15243 131 aa7.48□□□□□ -1.21
SCN9A-204ENST00000452182 GCSHP23434 173 aa7.48□□□□□ -1.21
SCN9A-204ENST00000452182 C2orf82Q6UX34 121 aa7.48□□□□□ -1.21
SCN9A-204ENST00000452182 UNQ6190/PRO20217Q6UXQ8 127 aa7.48□□□□□ -1.21
SCN9A-204ENST00000452182 EPPK1P58107 5090 aaKnown RBP7.47□□□□□ -1.21
SCN9A-204ENST00000452182 C16orf90A8MZG2 172 aa7.47□□□□□ -1.21
SCN9A-204ENST00000452182 C10orf25Q5T742 122 aa7.47□□□□□ -1.21
SCN9A-204ENST00000452182 PLEKHB2Q96CS7 222 aa7.47□□□□□ -1.21
SCN9A-204ENST00000452182 C6orf48Q9UBA6 75 aa7.47□□□□□ -1.21
SCN9A-204ENST00000452182 PKIGQ9Y2B9 76 aa7.47□□□□□ -1.21
SCN9A-204ENST00000452182 SCGB1D1O95968 90 aa7.46□□□□□ -1.21
SCN9A-204ENST00000452182 JOSD1Q15040 202 aaPredicted RBP7.46□□□□□ -1.21
SCN9A-204ENST00000452182 SDIM1Q6ZPB5 146 aa7.46□□□□□ -1.21
SCN9A-204ENST00000452182 STPG4Q8N801 248 aa7.46□□□□□ -1.21
SCN9A-204ENST00000452182 ZNF625Q96I27 306 aaPredicted RBP7.46□□□□□ -1.21
SCN9A-204ENST00000452182 J3QQQ9 107 aa7.45□□□□□ -1.22
SCN9A-204ENST00000452182 ATOH7Q8N100 152 aa7.45□□□□□ -1.22
SCN9A-204ENST00000452182 PLA2G2DQ9UNK4 145 aa7.45□□□□□ -1.22
SCN9A-204ENST00000452182 TLX1NBP0CAT3 122 aa7.45□□□□□ -1.22
SCN9A-204ENST00000452182 NMUP48645 174 aa7.45□□□□□ -1.22
SCN9A-204ENST00000452182 LINC01620Q4KN68 170 aa7.45□□□□□ -1.22
SCN9A-204ENST00000452182 DYNC1H1Q14204 4646 aaKnown RBP7.44□□□□□ -1.22
SCN9A-204ENST00000452182 TSPEAR-AS2P59090 65 aa7.44□□□□□ -1.22
SCN9A-204ENST00000452182 KRTAP10-1P60331 282 aa7.44□□□□□ -1.22
SCN9A-204ENST00000452182 LOC107984640A0A0U1RRK4 108 aa7.43□□□□□ -1.22
SCN9A-204ENST00000452182 LGALS3P17931 250 aaKnown RBP7.43□□□□□ -1.22
SCN9A-204ENST00000452182 HERV-K104P63124 156 aa7.43□□□□□ -1.22
SCN9A-204ENST00000452182 NDUFA12Q9UI09 145 aa7.43□□□□□ -1.22
SCN9A-204ENST00000452182 MYMXA0A1B0GTQ4 84 aa7.42□□□□□ -1.22
SCN9A-204ENST00000452182 NDUFC2-KCTD14E9PQ53 114 aa7.42□□□□□ -1.22
SCN9A-204ENST00000452182 LRP1BQ9NZR2 4599 aa7.42□□□□□ -1.22
SCN9A-204ENST00000452182 IGKV2D-26A0A0A0MRZ7 120 aa7.41□□□□□ -1.22
SCN9A-204ENST00000452182 HSBP1L1C9JCN9 74 aa7.41□□□□□ -1.22
SCN9A-204ENST00000452182 CIRBPQ14011 172 aaKnown RBP7.41□□□□□ -1.22
SCN9A-204ENST00000452182 COX17Q14061 63 aa7.41□□□□□ -1.22
SCN9A-204ENST00000452182 C9orf116Q5BN46 136 aaPredicted RBP7.41□□□□□ -1.22
SCN9A-204ENST00000452182 Q6ZSA8 131 aa7.41□□□□□ -1.22
SCN9A-204ENST00000452182 PYY3Q5JQD4 70 aa7.41□□□□□ -1.22
SCN9A-204ENST00000452182 LINC00474Q9P2X8 69 aa7.41□□□□□ -1.22
SCN9A-204ENST00000452182 DNAH8Q96JB1 4490 aa7.4□□□□□ -1.22
SCN9A-204ENST00000452182 LINC00587B1AMM8 73 aa7.4□□□□□ -1.22
SCN9A-204ENST00000452182 PTTG1IPP53801 180 aa7.4□□□□□ -1.22
SCN9A-204ENST00000452182 MAJINQ3KP22 176 aa7.4□□□□□ -1.22
SCN9A-204ENST00000452182 Q6ZRP5 223 aa7.4□□□□□ -1.22
SCN9A-204ENST00000452182 ERG28Q9UKR5 140 aa7.4□□□□□ -1.22
SCN9A-204ENST00000452182 A0A096LNI7 61 aa7.39□□□□□ -1.23
SCN9A-204ENST00000452182 RPL18AQ02543 176 aaKnown RBP7.39□□□□□ -1.23
SCN9A-204ENST00000452182 SPACA4Q8TDM5 124 aa7.38□□□□□ -1.23
SCN9A-204ENST00000452182 FAM30AQ9NZY2 134 aa7.38□□□□□ -1.23
SCN9A-204ENST00000452182 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.38□□□□□ -1.23
SCN9A-204ENST00000452182 GAGE2BQ13066 116 aa7.38□□□□□ -1.23
SCN9A-204ENST00000452182 IGKV2-24A0A0C4DH68 120 aa7.37□□□□□ -1.23
SCN9A-204ENST00000452182 A0A0J9YXY3 114 aa7.37□□□□□ -1.23
SCN9A-204ENST00000452182 ZNF815PA8K554 130 aa7.37□□□□□ -1.23
SCN9A-204ENST00000452182 PANO1I0J062 215 aa7.37□□□□□ -1.23
SCN9A-204ENST00000452182 CHTF8P0CG12 524 aa7.37□□□□□ -1.23
SCN9A-204ENST00000452182 PFN2P35080 140 aa7.37□□□□□ -1.23
SCN9A-204ENST00000452182 VAMP8Q9BV40 100 aa7.37□□□□□ -1.23
SCN9A-204ENST00000452182 MEIG1Q5JSS6 88 aa7.36□□□□□ -1.23
SCN9A-204ENST00000452182 PCP2Q8IVA1 136 aa7.36□□□□□ -1.23
SCN9A-204ENST00000452182 TTTY13Q9BZ97 58 aa7.36□□□□□ -1.23
SCN9A-204ENST00000452182 LOC105371267A0A1B0GV96 52 aa7.35□□□□□ -1.23
SCN9A-204ENST00000452182 CDK2AP2O75956 126 aa7.35□□□□□ -1.23
SCN9A-204ENST00000452182 SMIM13P0DJ93 91 aa7.35□□□□□ -1.23
SCN9A-204ENST00000452182 LINC00158P58513 81 aa7.35□□□□□ -1.23
SCN9A-204ENST00000452182 GAGE2EQ4V326 116 aa7.35□□□□□ -1.23
SCN9A-204ENST00000452182 GAGE2DQ9UEU5 116 aa7.35□□□□□ -1.23
SCN9A-204ENST00000452182 EPM2AB3EWF7 344 aa7.34□□□□□ -1.23
SCN9A-204ENST00000452182 TIMM17BO60830 172 aa7.34□□□□□ -1.23
SCN9A-204ENST00000452182 C9orf129Q5T035 196 aaKnown RBP7.34□□□□□ -1.23
SCN9A-204ENST00000452182 PAM16Q9Y3D7 125 aa7.34□□□□□ -1.23
SCN9A-204ENST00000452182 APOBP04114 4563 aaKnown RBP7.34□□□□□ -1.23
SCN9A-204ENST00000452182 SPATA45Q537H7 98 aa7.34□□□□□ -1.24
SCN9A-204ENST00000452182 SCXQ7RTU7 201 aa7.34□□□□□ -1.24
SCN9A-204ENST00000452182 DPH3Q96FX2 82 aa7.34□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms