RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 LINC01356Q8N9X3 169 aa13.63□□□□□ -0.23
HMGA1-205ENST00000447654 MYO9AB2RTY4 2548 aa13.63□□□□□ -0.23
HMGA1-205ENST00000447654 IGHV3-53P01767 116 aa13.62□□□□□ -0.23
HMGA1-205ENST00000447654 RPL36AP83881 106 aaKnown RBP13.62□□□□□ -0.23
HMGA1-205ENST00000447654 RPL36ALQ969Q0 106 aaKnown RBP13.62□□□□□ -0.23
HMGA1-205ENST00000447654 ITPR3Q14573 2671 aa13.62□□□□□ -0.23
HMGA1-205ENST00000447654 PROK1P58294 105 aa13.61□□□□□ -0.23
HMGA1-205ENST00000447654 HECTD1Q9ULT8 2610 aa13.61□□□□□ -0.23
HMGA1-205ENST00000447654 TMEM256-PLSCR3K7ERE1 68 aa13.61□□□□□ -0.23
HMGA1-205ENST00000447654 LINC00482Q8N8I6 264 aa13.61□□□□□ -0.23
HMGA1-205ENST00000447654 BRK1Q8WUW1 75 aa13.61□□□□□ -0.23
HMGA1-205ENST00000447654 CCDC168Q8NDH2 2452 aa13.6□□□□□ -0.23
HMGA1-205ENST00000447654 NF1P21359 2839 aa13.6□□□□□ -0.23
HMGA1-205ENST00000447654 IGHV3-73A0A0B4J1V6 119 aa13.6□□□□□ -0.23
HMGA1-205ENST00000447654 LY6G6DO95868 133 aa13.6□□□□□ -0.23
HMGA1-205ENST00000447654 SONP18583 2426 aaKnown RBP13.6□□□□□ -0.23
HMGA1-205ENST00000447654 WFDC9Q8NEX5 89 aa13.59□□□□□ -0.23
HMGA1-205ENST00000447654 F8WEM9 126 aa13.59□□□□□ -0.23
HMGA1-205ENST00000447654 RBM3P98179 157 aaKnown RBP13.59□□□□□ -0.23
HMGA1-205ENST00000447654 SPINK13Q1W4C9 94 aa13.59□□□□□ -0.23
HMGA1-205ENST00000447654 IGHV4-31P0DP07 118 aa13.56□□□□□ -0.24
HMGA1-205ENST00000447654 Q6ZSN1 163 aa13.55□□□□□ -0.24
HMGA1-205ENST00000447654 IBA57-AS1B1ANH7 110 aa13.55□□□□□ -0.24
HMGA1-205ENST00000447654 K7EQG2 157 aa13.55□□□□□ -0.24
HMGA1-205ENST00000447654 CCL18P55774 89 aa13.55□□□□□ -0.24
HMGA1-205ENST00000447654 FLNAP21333 2647 aaKnown RBP13.54□□□□□ -0.24
HMGA1-205ENST00000447654 COX7B2Q8TF08 81 aa13.54□□□□□ -0.24
HMGA1-205ENST00000447654 LAMTOR3Q9UHA4 124 aa13.54□□□□□ -0.24
HMGA1-205ENST00000447654 ITPR2Q14571 2701 aa13.53□□□□□ -0.24
HMGA1-205ENST00000447654 FSHBP01225 129 aa13.53□□□□□ -0.24
HMGA1-205ENST00000447654 IGKV3-20P01619 116 aa13.53□□□□□ -0.24
HMGA1-205ENST00000447654 SLPIP03973 132 aa13.53□□□□□ -0.24
HMGA1-205ENST00000447654 RMI2Q96E14 147 aa13.53□□□□□ -0.24
HMGA1-205ENST00000447654 IGHV3-38A0A0C4DH36 116 aa13.52□□□□□ -0.24
HMGA1-205ENST00000447654 Q9UF83 564 aa13.52□□□□□ -0.24
HMGA1-205ENST00000447654 TRBV6-4A0A1B0GX49 114 aa13.52□□□□□ -0.25
HMGA1-205ENST00000447654 ERC2-IT1O76042 136 aa13.52□□□□□ -0.25
HMGA1-205ENST00000447654 CXCL6P80162 114 aa13.52□□□□□ -0.25
HMGA1-205ENST00000447654 SORL1Q92673 2214 aa13.52□□□□□ -0.25
HMGA1-205ENST00000447654 DEFB113Q30KQ7 82 aa13.51□□□□□ -0.25
HMGA1-205ENST00000447654 KRTAP1-3Q8IUG1 177 aa13.51□□□□□ -0.25
HMGA1-205ENST00000447654 CDC42SE2Q9NRR3 84 aa13.51□□□□□ -0.25
HMGA1-205ENST00000447654 LINC00474Q9P2X8 69 aa13.51□□□□□ -0.25
HMGA1-205ENST00000447654 C11orf72Q8NBR9 251 aa13.51□□□□□ -0.25
HMGA1-205ENST00000447654 LINC00158P58513 81 aa13.5□□□□□ -0.25
HMGA1-205ENST00000447654 Q8N814 137 aa13.5□□□□□ -0.25
HMGA1-205ENST00000447654 SNURFQ9Y675 71 aa13.5□□□□□ -0.25
HMGA1-205ENST00000447654 LOC110117498A0A087WWA1 95 aa13.49□□□□□ -0.25
HMGA1-205ENST00000447654 A0A1W2PRX2 142 aa13.49□□□□□ -0.25
HMGA1-205ENST00000447654 PDZD2O15018 2839 aa13.49□□□□□ -0.25
HMGA1-205ENST00000447654 A0A0U1RQV1 116 aa13.48□□□□□ -0.25
HMGA1-205ENST00000447654 K7EQD1 137 aa13.48□□□□□ -0.25
HMGA1-205ENST00000447654 Q6YL49 198 aa13.48□□□□□ -0.25
HMGA1-205ENST00000447654 Q96MF0 132 aa13.48□□□□□ -0.25
HMGA1-205ENST00000447654 ACANP16112 2415 aa13.48□□□□□ -0.25
HMGA1-205ENST00000447654 TRBV7-4A0A0J9YYF1 115 aa13.48□□□□□ -0.25
HMGA1-205ENST00000447654 LINC01547P58512 204 aaPredicted RBP13.48□□□□□ -0.25
HMGA1-205ENST00000447654 A8MTW9 85 aa13.47□□□□□ -0.25
HMGA1-205ENST00000447654 MIFP14174 115 aa13.47□□□□□ -0.25
HMGA1-205ENST00000447654 ZNF702PQ9H963 129 aa13.47□□□□□ -0.25
HMGA1-205ENST00000447654 C1orf158Q8N1D5 194 aa13.46□□□□□ -0.25
HMGA1-205ENST00000447654 SETD2Q9BYW2 2564 aaPredicted RBP13.46□□□□□ -0.25
HMGA1-205ENST00000447654 PAX4O43316 350 aa13.45□□□□□ -0.26
HMGA1-205ENST00000447654 Q6ZQT0 140 aa13.45□□□□□ -0.26
HMGA1-205ENST00000447654 PDE6GP18545 87 aa13.45□□□□□ -0.26
HMGA1-205ENST00000447654 NIPBLQ6KC79 2804 aaeCLIP13.45□□□□□ -0.266e-7■■□□□ 12.3
HMGA1-205ENST00000447654 TRAV10A0A0B4J240 114 aa13.44□□□□□ -0.26
HMGA1-205ENST00000447654 TRBV10-1A0A0K0K1A3 114 aa13.44□□□□□ -0.26
HMGA1-205ENST00000447654 C18orf65Q6ZTR6 163 aa13.43□□□□□ -0.26
HMGA1-205ENST00000447654 PRR15Q8IV56 129 aa13.43□□□□□ -0.26
HMGA1-205ENST00000447654 PLAC8L1A1L4L8 177 aa13.42□□□□□ -0.26
HMGA1-205ENST00000447654 ANK3Q12955 4377 aaKnown RBP13.41□□□□□ -0.26
HMGA1-205ENST00000447654 MTORP42345 2549 aa13.41□□□□□ -0.26
HMGA1-205ENST00000447654 H3BQ85 93 aa13.41□□□□□ -0.26
HMGA1-205ENST00000447654 C6orf226Q5I0X4 101 aa13.41□□□□□ -0.26
HMGA1-205ENST00000447654 Q6ZVQ6 151 aa13.39□□□□□ -0.27
HMGA1-205ENST00000447654 ZNF561-AS1K7EIQ3 104 aa13.39□□□□□ -0.27
HMGA1-205ENST00000447654 ESRGQ1W209 222 aa13.39□□□□□ -0.27
HMGA1-205ENST00000447654 UNC79Q9P2D8 2635 aa13.39□□□□□ -0.27
HMGA1-205ENST00000447654 TMEM89A2RUT3 159 aa13.38□□□□□ -0.27
HMGA1-205ENST00000447654 HTN1P15515 57 aa13.38□□□□□ -0.27
HMGA1-205ENST00000447654 PMAIP1Q13794 54 aa13.38□□□□□ -0.27
HMGA1-205ENST00000447654 DEFB136Q30KP8 78 aa13.38□□□□□ -0.27
HMGA1-205ENST00000447654 C6orf223Q8N319 242 aa13.38□□□□□ -0.27
HMGA1-205ENST00000447654 DYNLRB2Q8TF09 96 aa13.38□□□□□ -0.27
HMGA1-205ENST00000447654 Q6ZRU5 148 aa13.38□□□□□ -0.27
HMGA1-205ENST00000447654 Q6ZTI0 123 aa13.37□□□□□ -0.27
HMGA1-205ENST00000447654 TMEM254Q8TBM7 123 aa13.37□□□□□ -0.27
HMGA1-205ENST00000447654 HAMPP81172 84 aa13.37□□□□□ -0.27
HMGA1-205ENST00000447654 C9orf66Q5T8R8 295 aa13.37□□□□□ -0.27
HMGA1-205ENST00000447654 NTM-AS1Q6ZSK4 140 aa13.37□□□□□ -0.27
HMGA1-205ENST00000447654 Q8N3U1 123 aa13.37□□□□□ -0.27
HMGA1-205ENST00000447654 TOMM7Q9P0U1 55 aa13.37□□□□□ -0.27
HMGA1-205ENST00000447654 C11orf44Q8N8P7 122 aa13.35□□□□□ -0.27
HMGA1-205ENST00000447654 UBE2E2Q96LR5 201 aa13.35□□□□□ -0.27
HMGA1-205ENST00000447654 UBE2L6O14933 153 aa13.34□□□□□ -0.27
HMGA1-205ENST00000447654 NREPQ16612 68 aa13.34□□□□□ -0.27
HMGA1-205ENST00000447654 TM2D3Q9BRN9 247 aa13.34□□□□□ -0.27
HMGA1-205ENST00000447654 NANOS2P60321 138 aaKnown RBP13.34□□□□□ -0.27
HMGA1-205ENST00000447654 SLURP1P55000 103 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms