RNA–Protein interactions for RNA: ENST00000443443.1

VPS50-206, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-206ENST00000443443 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.11□□□□□ -2.07
VPS50-206ENST00000443443 LINC00472Q9H8W2 130 aa2.11□□□□□ -2.07
VPS50-206ENST00000443443 SHPRHQ149N8 1683 aa2.11□□□□□ -2.07
VPS50-206ENST00000443443 MDC1Q14676 2089 aaKnown RBP2.11□□□□□ -2.07
VPS50-206ENST00000443443 ABCA4P78363 2273 aa2.11□□□□□ -2.07
VPS50-206ENST00000443443 IFT172Q9UG01 1749 aa2.11□□□□□ -2.07
VPS50-206ENST00000443443 CRYBG1Q9Y4K1 1723 aa2.11□□□□□ -2.07
VPS50-206ENST00000443443 ALKQ9UM73 1620 aa2.1□□□□□ -2.07
VPS50-206ENST00000443443 RALGAPBQ86X10 1494 aa2.1□□□□□ -2.07
VPS50-206ENST00000443443 SPINK7P58062 85 aa2.1□□□□□ -2.07
VPS50-206ENST00000443443 SMIM11BQ8TCY0 68 aa2.1□□□□□ -2.07
VPS50-206ENST00000443443 FAM103A1Q9BTL3 118 aaKnown RBP2.1□□□□□ -2.07
VPS50-206ENST00000443443 FN1P02751 2386 aaKnown RBP2.1□□□□□ -2.07
VPS50-206ENST00000443443 FREM1Q5H8C1 2179 aa2.09□□□□□ -2.07
VPS50-206ENST00000443443 NCR3O14931 201 aa2.09□□□□□ -2.07
VPS50-206ENST00000443443 DEFB103AP81534 67 aa2.09□□□□□ -2.07
VPS50-206ENST00000443443 KRTAP13-4Q3LI77 160 aa2.09□□□□□ -2.07
VPS50-206ENST00000443443 ZCCHC13Q8WW36 166 aaKnown RBP2.09□□□□□ -2.07
VPS50-206ENST00000443443 ABCA6Q8N139 1617 aa2.09□□□□□ -2.08
VPS50-206ENST00000443443 PLCH1Q4KWH8 1693 aa2.09□□□□□ -2.08
VPS50-206ENST00000443443 ANKRD50Q9ULJ7 1429 aa2.08□□□□□ -2.08
VPS50-206ENST00000443443 PRXQ9BXM0 1461 aa2.08□□□□□ -2.08
VPS50-206ENST00000443443 PRRC2BQ5JSZ5 2229 aaKnown RBP2.08□□□□□ -2.08
VPS50-206ENST00000443443 A0A0D9SFI3 127 aa2.08□□□□□ -2.08
VPS50-206ENST00000443443 TRBV6-1A0A0K0K1D8 114 aa2.08□□□□□ -2.08
VPS50-206ENST00000443443 IFI6P09912 130 aa2.08□□□□□ -2.08
VPS50-206ENST00000443443 SPINK13Q1W4C9 94 aa2.08□□□□□ -2.08
VPS50-206ENST00000443443 LINC00575Q6W349 94 aa2.08□□□□□ -2.08
VPS50-206ENST00000443443 Q6ZRX8 168 aa2.08□□□□□ -2.08
VPS50-206ENST00000443443 C5P01031 1676 aa2.08□□□□□ -2.08
VPS50-206ENST00000443443 XRN1Q8IZH2 1706 aaKnown RBP2.08□□□□□ -2.08
VPS50-206ENST00000443443 TET1Q8NFU7 2136 aa2.08□□□□□ -2.08
VPS50-206ENST00000443443 RNF17Q9BXT8 1623 aaKnown RBP2.07□□□□□ -2.08
VPS50-206ENST00000443443 COL4A1P02462 1669 aa2.07□□□□□ -2.08
VPS50-206ENST00000443443 PREX1Q8TCU6 1659 aa2.07□□□□□ -2.08
VPS50-206ENST00000443443 TRAV21A0A0B4J279 112 aa2.07□□□□□ -2.08
VPS50-206ENST00000443443 WFDC9Q8NEX5 89 aa2.07□□□□□ -2.08
VPS50-206ENST00000443443 PLAC4Q8WY50 150 aa2.07□□□□□ -2.08
VPS50-206ENST00000443443 ZNF236Q9UL36 1845 aa2.07□□□□□ -2.08
VPS50-206ENST00000443443 MYO7BQ6PIF6 2116 aa2.06□□□□□ -2.08
VPS50-206ENST00000443443 LRP6O75581 1613 aa2.06□□□□□ -2.08
VPS50-206ENST00000443443 PAPPAQ13219 1627 aa2.06□□□□□ -2.08
VPS50-206ENST00000443443 USP32Q8NFA0 1604 aa2.06□□□□□ -2.08
VPS50-206ENST00000443443 HAMPP81172 84 aa2.06□□□□□ -2.08
VPS50-206ENST00000443443 NREPQ16612 68 aa2.06□□□□□ -2.08
VPS50-206ENST00000443443 DEFB112Q30KQ8 113 aa2.06□□□□□ -2.08
VPS50-206ENST00000443443 SAMD9Q5K651 1589 aa2.06□□□□□ -2.08
VPS50-206ENST00000443443 LRRC37A2A6NM11 1700 aa2.05□□□□□ -2.08
VPS50-206ENST00000443443 PKD1L3Q7Z443 1732 aa2.05□□□□□ -2.08
VPS50-206ENST00000443443 A0A096LNT2 108 aa2.05□□□□□ -2.08
VPS50-206ENST00000443443 GVQW2A0A096LPI5 108 aaPredicted RBP2.05□□□□□ -2.08
VPS50-206ENST00000443443 A0A1B0GU69 56 aa2.05□□□□□ -2.08
VPS50-206ENST00000443443 PIN1P1O15428 100 aa2.05□□□□□ -2.08
VPS50-206ENST00000443443 HMGA1P17096 107 aaKnown RBP2.05□□□□□ -2.08
VPS50-206ENST00000443443 GAFA1Q96PS6 74 aa2.05□□□□□ -2.08
VPS50-206ENST00000443443 FXYD6Q9H0Q3 95 aa2.05□□□□□ -2.08
VPS50-206ENST00000443443 FANCD2Q9BXW9 1451 aa2.05□□□□□ -2.08
VPS50-206ENST00000443443 DIP2AQ14689 1571 aa2.05□□□□□ -2.08
VPS50-206ENST00000443443 NHSQ6T4R5 1651 aa2.05□□□□□ -2.08
VPS50-206ENST00000443443 OTOGLQ3ZCN5 2332 aa2.05□□□□□ -2.08
VPS50-206ENST00000443443 E9PCH4 1651 aa2.04□□□□□ -2.08
VPS50-206ENST00000443443 LINC01549A6NIU2 74 aa2.03□□□□□ -2.08
VPS50-206ENST00000443443 NHSL1Q5SYE7 1610 aa2.02□□□□□ -2.09
VPS50-206ENST00000443443 CICQ96RK0 1608 aaPredicted RBP2.02□□□□□ -2.09
VPS50-206ENST00000443443 GLI2P10070 1586 aa2.02□□□□□ -2.09
VPS50-206ENST00000443443 LRRC7Q96NW7 1537 aa2.02□□□□□ -2.09
VPS50-206ENST00000443443 SNRPGP15A8MWD9 76 aa2.02□□□□□ -2.09
VPS50-206ENST00000443443 G3V318 75 aa2.02□□□□□ -2.09
VPS50-206ENST00000443443 MAP2P11137 1827 aaKnown RBP2.02□□□□□ -2.09
VPS50-206ENST00000443443 FBN1P35555 2871 aaKnown RBP2.02□□□□□ -2.09
VPS50-206ENST00000443443 VWDEQ8N2E2 1590 aa2.02□□□□□ -2.09
VPS50-206ENST00000443443 LY6G6CO95867 125 aa2.01□□□□□ -2.09
VPS50-206ENST00000443443 WIZO95785 1651 aa2.01□□□□□ -2.09
VPS50-206ENST00000443443 KIF1AQ12756 1690 aa2.01□□□□□ -2.09
VPS50-206ENST00000443443 ALS2Q96Q42 1657 aa2.01□□□□□ -2.09
VPS50-206ENST00000443443 MAST1Q9Y2H9 1570 aa2.01□□□□□ -2.09
VPS50-206ENST00000443443 ANKRD36A6QL64 1941 aa2.01□□□□□ -2.09
VPS50-206ENST00000443443 SDK1Q7Z5N4 2213 aa2□□□□□ -2.09
VPS50-206ENST00000443443 SYCP2Q9BX26 1530 aa2□□□□□ -2.09
VPS50-206ENST00000443443 TIAM2Q8IVF5 1701 aa2□□□□□ -2.09
VPS50-206ENST00000443443 ICE1Q9Y2F5 2266 aa2□□□□□ -2.09
VPS50-206ENST00000443443 KIAA0556O60303 1618 aa1.99□□□□□ -2.09
VPS50-206ENST00000443443 LAMC1P11047 1609 aa1.99□□□□□ -2.09
VPS50-206ENST00000443443 RPL37P61927 97 aaKnown RBP1.99□□□□□ -2.09
VPS50-206ENST00000443443 PCOTHQ58A44 107 aa1.99□□□□□ -2.09
VPS50-206ENST00000443443 SSBP3-AS1Q7Z2R9 100 aa1.99□□□□□ -2.09
VPS50-206ENST00000443443 CPS1P31327 1500 aa1.99□□□□□ -2.09
VPS50-206ENST00000443443 CFAP43Q8NDM7 1665 aa1.99□□□□□ -2.09
VPS50-206ENST00000443443 ITSN2Q9NZM3 1697 aa1.99□□□□□ -2.09
VPS50-206ENST00000443443 CLASP1Q7Z460 1538 aa1.98□□□□□ -2.09
VPS50-206ENST00000443443 LCE6AA0A183 80 aa1.98□□□□□ -2.09
VPS50-206ENST00000443443 UBL5Q9BZL1 73 aa1.98□□□□□ -2.09
VPS50-206ENST00000443443 EIF2AK4Q9P2K8 1649 aaKnown RBP1.98□□□□□ -2.09
VPS50-206ENST00000443443 DNAJC13O75165 2243 aa1.98□□□□□ -2.09
VPS50-206ENST00000443443 ZNF831Q5JPB2 1677 aa1.97□□□□□ -2.09
VPS50-206ENST00000443443 LINC00959A0A1B0GUT2 108 aa1.97□□□□□ -2.09
VPS50-206ENST00000443443 ENHOQ6UWT2 76 aa1.97□□□□□ -2.09
VPS50-206ENST00000443443 SSC5DA1L4H1 1573 aa1.97□□□□□ -2.09
VPS50-206ENST00000443443 COX7BP24311 80 aa1.96□□□□□ -2.1
VPS50-206ENST00000443443 RPL38P63173 70 aaKnown RBP1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms