RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 TLN1Q9Y490 2541 aaKnown RBP12.25□□□□□ -0.45
PTPRF-209ENST00000438120 C1orf137Q5JT78 98 aa12.25□□□□□ -0.45
PTPRF-209ENST00000438120 RPL28P46779 137 aaKnown RBP12.24□□□□□ -0.45
PTPRF-209ENST00000438120 ESRGQ1W209 222 aa12.24□□□□□ -0.45
PTPRF-209ENST00000438120 PRR15LQ9BU68 103 aa12.23□□□□□ -0.45
PTPRF-209ENST00000438120 EP400Q96L91 3159 aa12.23□□□□□ -0.45
PTPRF-209ENST00000438120 C16orf95Q9H693 158 aa12.23□□□□□ -0.45
PTPRF-209ENST00000438120 LINC01556Q5JQF7 62 aa12.22□□□□□ -0.45
PTPRF-209ENST00000438120 A0A087WVE0 104 aa12.22□□□□□ -0.45
PTPRF-209ENST00000438120 IGHV6-1A0A0B4J1U7 121 aa12.21□□□□□ -0.46
PTPRF-209ENST00000438120 A6NED7 52 aa12.21□□□□□ -0.46
PTPRF-209ENST00000438120 IMUPQ9GZP8 106 aa12.21□□□□□ -0.46
PTPRF-209ENST00000438120 SERP1Q9Y6X1 66 aa12.2□□□□□ -0.46
PTPRF-209ENST00000438120 EML5Q05BV3 1969 aa12.2□□□□□ -0.46
PTPRF-209ENST00000438120 A8MTW9 85 aa12.2□□□□□ -0.46
PTPRF-209ENST00000438120 COX7CP15954 63 aa12.2□□□□□ -0.46
PTPRF-209ENST00000438120 MUC7Q8TAX7 377 aa12.2□□□□□ -0.46
PTPRF-209ENST00000438120 DEFB116Q30KQ4 102 aa12.2□□□□□ -0.46
PTPRF-209ENST00000438120 LYPD5Q6UWN5 251 aa12.19□□□□□ -0.46
PTPRF-209ENST00000438120 Q6JHZ5 121 aa12.19□□□□□ -0.46
PTPRF-209ENST00000438120 AMELXQ99217 191 aa12.19□□□□□ -0.46
PTPRF-209ENST00000438120 NDUFC1O43677 76 aa12.18□□□□□ -0.46
PTPRF-209ENST00000438120 Q6ZVQ6 151 aa12.18□□□□□ -0.46
PTPRF-209ENST00000438120 Q6Q795 121 aa12.18□□□□□ -0.46
PTPRF-209ENST00000438120 MRPL55Q7Z7F7 128 aaKnown RBP12.17□□□□□ -0.46
PTPRF-209ENST00000438120 A0A096LNJ9 63 aa12.17□□□□□ -0.46
PTPRF-209ENST00000438120 LINC00208Q96KT6 92 aa12.17□□□□□ -0.46
PTPRF-209ENST00000438120 Q9BRP9 147 aa12.16□□□□□ -0.46
PTPRF-209ENST00000438120 BEAN1Q3B7T3 259 aa12.16□□□□□ -0.46
PTPRF-209ENST00000438120 ABCA12Q86UK0 2595 aa12.16□□□□□ -0.46
PTPRF-209ENST00000438120 LINC01547P58512 204 aaPredicted RBP12.14□□□□□ -0.47
PTPRF-209ENST00000438120 V9GYY9 64 aa12.14□□□□□ -0.47
PTPRF-209ENST00000438120 CSDC2Q9Y534 153 aaKnown RBP12.13□□□□□ -0.47
PTPRF-209ENST00000438120 ZFYVE26Q68DK2 2539 aa12.13□□□□□ -0.47
PTPRF-209ENST00000438120 ATP5EP56381 51 aaPredicted RBP12.13□□□□□ -0.47
PTPRF-209ENST00000438120 TLN2Q9Y4G6 2542 aa12.13□□□□□ -0.47
PTPRF-209ENST00000438120 CPAMD8Q8IZJ3 1885 aa12.13□□□□□ -0.47
PTPRF-209ENST00000438120 Q6ZRU5 148 aa12.13□□□□□ -0.47
PTPRF-209ENST00000438120 C1orf134Q5TEV5 83 aa12.12□□□□□ -0.47
PTPRF-209ENST00000438120 LINC00575Q6W349 94 aa12.12□□□□□ -0.47
PTPRF-209ENST00000438120 A0A087WSZ3 146 aa12.12□□□□□ -0.47
PTPRF-209ENST00000438120 X6R8D5 127 aa12.12□□□□□ -0.47
PTPRF-209ENST00000438120 PRLHP81277 87 aa12.11□□□□□ -0.47
PTPRF-209ENST00000438120 COX8CQ7Z4L0 72 aa12.11□□□□□ -0.47
PTPRF-209ENST00000438120 PCOTHQ58A44 107 aa12.1□□□□□ -0.47
PTPRF-209ENST00000438120 AGRNO00468 2067 aa12.1□□□□□ -0.47
PTPRF-209ENST00000438120 A0A1B0GUV1 79 aa12.09□□□□□ -0.47
PTPRF-209ENST00000438120 SOSTDC1Q6X4U4 206 aa12.08□□□□□ -0.47
PTPRF-209ENST00000438120 FN1P02751 2386 aaKnown RBP12.08□□□□□ -0.48
PTPRF-209ENST00000438120 CENPFP49454 3210 aa12.07□□□□□ -0.48
PTPRF-209ENST00000438120 SPINK1P00995 79 aa12.07□□□□□ -0.48
PTPRF-209ENST00000438120 Q8N3U1 123 aa12.07□□□□□ -0.48
PTPRF-209ENST00000438120 FHL3Q13643 280 aa12.06□□□□□ -0.48
PTPRF-209ENST00000438120 SETD2Q9BYW2 2564 aaPredicted RBP12.06□□□□□ -0.48
PTPRF-209ENST00000438120 TET2Q6N021 2002 aaPredicted RBP12.06□□□□□ -0.48
PTPRF-209ENST00000438120 TRAV7A0A075B6U4 112 aa12.06□□□□□ -0.48
PTPRF-209ENST00000438120 USP9XQ93008 2570 aaPredicted RBP12.05□□□□□ -0.48
PTPRF-209ENST00000438120 C2orf48Q96LS8 159 aa12.05□□□□□ -0.48
PTPRF-209ENST00000438120 LRRK2Q5S007 2527 aa12.05□□□□□ -0.48
PTPRF-209ENST00000438120 TRBV7-6A0A0J9YX20 115 aa12.04□□□□□ -0.48
PTPRF-209ENST00000438120 SBSPONQ8IVN8 264 aa12.04□□□□□ -0.48
PTPRF-209ENST00000438120 ADAMTS20P59510 1910 aa12.03□□□□□ -0.48
PTPRF-209ENST00000438120 LINC00337Q8N6G1 96 aa12.03□□□□□ -0.48
PTPRF-209ENST00000438120 PRYO14603 147 aa12.03□□□□□ -0.48
PTPRF-209ENST00000438120 C11orf72Q8NBR9 251 aa12.03□□□□□ -0.48
PTPRF-209ENST00000438120 C22orf24Q9Y442 160 aa12.02□□□□□ -0.49
PTPRF-209ENST00000438120 COL5A1P20908 1838 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-209ENST00000438120 KIF25-AS1Q9Y6Z4 181 aa12.01□□□□□ -0.49
PTPRF-209ENST00000438120 CEP295Q9C0D2 2601 aa12□□□□□ -0.49
PTPRF-209ENST00000438120 SMCR5Q8TEV8 140 aa11.99□□□□□ -0.49
PTPRF-209ENST00000438120 MDFIQ99750 246 aa11.98□□□□□ -0.49
PTPRF-209ENST00000438120 LINC00846Q9NV44 126 aa11.98□□□□□ -0.49
PTPRF-209ENST00000438120 ANKRD11Q6UB99 2663 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-209ENST00000438120 H0Y9P7 68 aa11.97□□□□□ -0.49
PTPRF-209ENST00000438120 FSHBP01225 129 aa11.96□□□□□ -0.49
PTPRF-209ENST00000438120 MUC4Q99102 2169 aa11.95□□□□□ -0.5
PTPRF-209ENST00000438120 F8WDY8 70 aa11.95□□□□□ -0.5
PTPRF-209ENST00000438120 SMIM26A0A096LP01 95 aa11.95□□□□□ -0.5
PTPRF-209ENST00000438120 HCG22E2RYF7 251 aa11.95□□□□□ -0.5
PTPRF-209ENST00000438120 TRBV7-7A0A0K0K1E9 115 aa11.94□□□□□ -0.5
PTPRF-209ENST00000438120 Q8N2B8 174 aa11.94□□□□□ -0.5
PTPRF-209ENST00000438120 Q9UF83 564 aa11.93□□□□□ -0.5
PTPRF-209ENST00000438120 PSPHP1O15172 72 aa11.93□□□□□ -0.5
PTPRF-209ENST00000438120 KIAA0087Q14695 138 aa11.93□□□□□ -0.5
PTPRF-209ENST00000438120 LINC01561Q8N1V8 128 aa11.92□□□□□ -0.5
PTPRF-209ENST00000438120 NHLRC4P0CG21 123 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-209ENST00000438120 USP9YO00507 2555 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-209ENST00000438120 IGHV3OR16-9A0A0B4J2B5 98 aa11.9□□□□□ -0.5
PTPRF-209ENST00000438120 LINC00315P59091 139 aa11.9□□□□□ -0.5
PTPRF-209ENST00000438120 IGLV5-39A0A0G2JS06 123 aa11.89□□□□□ -0.51
PTPRF-209ENST00000438120 GOLGB1Q14789 3259 aaKnown RBP11.89□□□□□ -0.51
PTPRF-209ENST00000438120 C6orf48Q9UBA6 75 aa11.88□□□□□ -0.51
PTPRF-209ENST00000438120 LINC00167Q96N53 147 aa11.88□□□□□ -0.51
PTPRF-209ENST00000438120 ZNF462Q96JM2 2506 aa11.88□□□□□ -0.51
PTPRF-209ENST00000438120 IGKV2D-30A0A075B6S6 120 aa11.87□□□□□ -0.51
PTPRF-209ENST00000438120 IGKV2-30P06310 120 aa11.87□□□□□ -0.51
PTPRF-209ENST00000438120 SPACA4Q8TDM5 124 aa11.87□□□□□ -0.51
PTPRF-209ENST00000438120 FAM19A4Q96LR4 140 aa11.87□□□□□ -0.51
PTPRF-209ENST00000438120 C1orf195Q5TG92 126 aa11.86□□□□□ -0.51
PTPRF-209ENST00000438120 TMEM254Q8TBM7 123 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms