RNA–Protein interactions for RNA: ENST00000428643.1

HMGA1P4-201, Transcript of high mobility group AT-hook 1 pseudogene 4, humanhuman

TSL 2 BASIC

Gene HMGA1P4, Length 334 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P4-201ENST00000428643 J3QQQ9 107 aa5.2□□□□□ -1.58
HMGA1P4-201ENST00000428643 TSPEAR-AS2P59090 65 aa5.2□□□□□ -1.58
HMGA1P4-201ENST00000428643 C6orf226Q5I0X4 101 aa5.2□□□□□ -1.58
HMGA1P4-201ENST00000428643 CDPF1Q6NVV7 123 aa5.2□□□□□ -1.58
HMGA1P4-201ENST00000428643 Q8IZM0 81 aa5.2□□□□□ -1.58
HMGA1P4-201ENST00000428643 CAMK2N2Q96S95 79 aa5.2□□□□□ -1.58
HMGA1P4-201ENST00000428643 IGKV2D-26A0A0A0MRZ7 120 aa5.19□□□□□ -1.58
HMGA1P4-201ENST00000428643 NDUFA1O15239 70 aa5.19□□□□□ -1.58
HMGA1P4-201ENST00000428643 CXCL5P42830 114 aa5.19□□□□□ -1.58
HMGA1P4-201ENST00000428643 SPATA45Q537H7 98 aa5.19□□□□□ -1.58
HMGA1P4-201ENST00000428643 C2orf82Q6UX34 121 aa5.19□□□□□ -1.58
HMGA1P4-201ENST00000428643 Q8N814 137 aa5.19□□□□□ -1.58
HMGA1P4-201ENST00000428643 KRTAP4-7Q9BYR0 210 aa5.19□□□□□ -1.58
HMGA1P4-201ENST00000428643 NDUFA12Q9UI09 145 aa5.19□□□□□ -1.58
HMGA1P4-201ENST00000428643 SYCNQ0VAF6 134 aa5.18□□□□□ -1.58
HMGA1P4-201ENST00000428643 KIAA0087Q14695 138 aa5.18□□□□□ -1.58
HMGA1P4-201ENST00000428643 LINC00336Q6ZUF6 198 aa5.18□□□□□ -1.58
HMGA1P4-201ENST00000428643 NTN5Q8WTR8 489 aaPredicted RBP5.18□□□□□ -1.58
HMGA1P4-201ENST00000428643 C2orf48Q96LS8 159 aa5.18□□□□□ -1.58
HMGA1P4-201ENST00000428643 CARD19Q96LW7 228 aa5.18□□□□□ -1.58
HMGA1P4-201ENST00000428643 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.17□□□□□ -1.58
HMGA1P4-201ENST00000428643 MYMXA0A1B0GTQ4 84 aa5.17□□□□□ -1.58
HMGA1P4-201ENST00000428643 ZNF815PA8K554 130 aa5.17□□□□□ -1.58
HMGA1P4-201ENST00000428643 F8WDY8 70 aa5.17□□□□□ -1.58
HMGA1P4-201ENST00000428643 SFTA2Q6UW10 78 aa5.17□□□□□ -1.58
HMGA1P4-201ENST00000428643 UNQ6190/PRO20217Q6UXQ8 127 aa5.17□□□□□ -1.58
HMGA1P4-201ENST00000428643 Q6ZRU5 148 aa5.17□□□□□ -1.58
HMGA1P4-201ENST00000428643 ZNF625Q96I27 306 aaPredicted RBP5.17□□□□□ -1.58
HMGA1P4-201ENST00000428643 TTTY13Q9BZ97 58 aa5.17□□□□□ -1.58
HMGA1P4-201ENST00000428643 DNAH10Q8IVF4 4471 aa5.17□□□□□ -1.58
HMGA1P4-201ENST00000428643 VPS13DQ5THJ4 4388 aa5.16□□□□□ -1.58
HMGA1P4-201ENST00000428643 FRAS1Q86XX4 4008 aa5.16□□□□□ -1.58
HMGA1P4-201ENST00000428643 IGLV5-52A0A0A0MRZ9 124 aa5.16□□□□□ -1.58
HMGA1P4-201ENST00000428643 CNBPP62633 177 aaKnown RBP5.16□□□□□ -1.58
HMGA1P4-201ENST00000428643 C10orf25Q5T742 122 aa5.16□□□□□ -1.58
HMGA1P4-201ENST00000428643 PCP2Q8IVA1 136 aa5.16□□□□□ -1.58
HMGA1P4-201ENST00000428643 C12orf57Q99622 126 aa5.16□□□□□ -1.58
HMGA1P4-201ENST00000428643 C6orf48Q9UBA6 75 aa5.16□□□□□ -1.58
HMGA1P4-201ENST00000428643 SLPIP03973 132 aa5.15□□□□□ -1.59
HMGA1P4-201ENST00000428643 FUSP35637 526 aaKnown RBP eCLIP5.15□□□□□ -1.59
HMGA1P4-201ENST00000428643 HERV-K104P63124 156 aa5.15□□□□□ -1.59
HMGA1P4-201ENST00000428643 MEIG1Q5JSS6 88 aa5.15□□□□□ -1.59
HMGA1P4-201ENST00000428643 SCGB1D4Q6XE38 83 aa5.15□□□□□ -1.59
HMGA1P4-201ENST00000428643 C14orf144Q96I85 54 aa5.15□□□□□ -1.59
HMGA1P4-201ENST00000428643 TP73-AS1Q9UF72 201 aa5.15□□□□□ -1.59
HMGA1P4-201ENST00000428643 ERG28Q9UKR5 140 aa5.15□□□□□ -1.59
HMGA1P4-201ENST00000428643 TRBV30A0A0K0K1B3 111 aa5.14□□□□□ -1.59
HMGA1P4-201ENST00000428643 COX8AP10176 69 aa5.14□□□□□ -1.59
HMGA1P4-201ENST00000428643 PFN2P35080 140 aa5.14□□□□□ -1.59
HMGA1P4-201ENST00000428643 C9orf116Q5BN46 136 aaPredicted RBP5.14□□□□□ -1.59
HMGA1P4-201ENST00000428643 A0A0J9YXY3 114 aa5.13□□□□□ -1.59
HMGA1P4-201ENST00000428643 A0A0U1RRA0 63 aa5.13□□□□□ -1.59
HMGA1P4-201ENST00000428643 LINC00158P58513 81 aa5.13□□□□□ -1.59
HMGA1P4-201ENST00000428643 KRTAP10-2P60368 255 aa5.13□□□□□ -1.59
HMGA1P4-201ENST00000428643 RPL18AQ02543 176 aaKnown RBP5.13□□□□□ -1.59
HMGA1P4-201ENST00000428643 LINC01620Q4KN68 170 aa5.13□□□□□ -1.59
HMGA1P4-201ENST00000428643 SLC25A34Q6PIV7 304 aa5.13□□□□□ -1.59
HMGA1P4-201ENST00000428643 LINC00518Q8N0U6 118 aa5.13□□□□□ -1.59
HMGA1P4-201ENST00000428643 PKIGQ9Y2B9 76 aa5.13□□□□□ -1.59
HMGA1P4-201ENST00000428643 LOC107984640A0A0U1RRK4 108 aa5.12□□□□□ -1.59
HMGA1P4-201ENST00000428643 LINC00587B1AMM8 73 aa5.12□□□□□ -1.59
HMGA1P4-201ENST00000428643 SMIM13P0DJ93 91 aa5.12□□□□□ -1.59
HMGA1P4-201ENST00000428643 CIRBPQ14011 172 aaKnown RBP5.12□□□□□ -1.59
HMGA1P4-201ENST00000428643 RNF151Q2KHN1 245 aa5.12□□□□□ -1.59
HMGA1P4-201ENST00000428643 BOD1L2Q8IYS8 172 aa5.12□□□□□ -1.59
HMGA1P4-201ENST00000428643 PRO1933Q9H354 126 aa5.12□□□□□ -1.59
HMGA1P4-201ENST00000428643 PGPEP1Q9NXJ5 209 aa5.12□□□□□ -1.59
HMGA1P4-201ENST00000428643 TMEM238C9JI98 176 aa5.11□□□□□ -1.59
HMGA1P4-201ENST00000428643 NDUFC2-KCTD14E9PQ53 114 aa5.11□□□□□ -1.59
HMGA1P4-201ENST00000428643 DLEU1O43261 78 aa5.11□□□□□ -1.59
HMGA1P4-201ENST00000428643 GAGE2EQ4V326 116 aa5.11□□□□□ -1.59
HMGA1P4-201ENST00000428643 C9orf163Q8N9P6 203 aa5.11□□□□□ -1.59
HMGA1P4-201ENST00000428643 UQCR10Q9UDW1 63 aa5.11□□□□□ -1.59
HMGA1P4-201ENST00000428643 GAGE2DQ9UEU5 116 aa5.11□□□□□ -1.59
HMGA1P4-201ENST00000428643 KMT2AQ03164 3969 aa5.11□□□□□ -1.59
HMGA1P4-201ENST00000428643 HERC2O95714 4834 aa5.11□□□□□ -1.59
HMGA1P4-201ENST00000428643 IGKV2-24A0A0C4DH68 120 aa5.1□□□□□ -1.59
HMGA1P4-201ENST00000428643 A0A1B0GVY2 172 aa5.1□□□□□ -1.59
HMGA1P4-201ENST00000428643 TSTD3H0UI37 97 aa5.1□□□□□ -1.59
HMGA1P4-201ENST00000428643 TIMM17BO60830 172 aa5.1□□□□□ -1.59
HMGA1P4-201ENST00000428643 GAGE2BQ13066 116 aa5.1□□□□□ -1.59
HMGA1P4-201ENST00000428643 COX17Q14061 63 aa5.1□□□□□ -1.59
HMGA1P4-201ENST00000428643 MIR7-3HGQ8N6C7 128 aa5.1□□□□□ -1.59
HMGA1P4-201ENST00000428643 DAND5Q8N907 189 aa5.1□□□□□ -1.59
HMGA1P4-201ENST00000428643 XAGE1AQ9HD64 81 aa5.1□□□□□ -1.59
HMGA1P4-201ENST00000428643 HECTD4Q9Y4D8 3996 aa5.09□□□□□ -1.59
HMGA1P4-201ENST00000428643 A0A096LNI7 61 aa5.09□□□□□ -1.59
HMGA1P4-201ENST00000428643 C16orf90A8MZG2 172 aa5.09□□□□□ -1.59
HMGA1P4-201ENST00000428643 TLX1NBP0CAT3 122 aa5.09□□□□□ -1.59
HMGA1P4-201ENST00000428643 CHTF8P0CG12 524 aa5.09□□□□□ -1.59
HMGA1P4-201ENST00000428643 GCSHP23434 173 aa5.09□□□□□ -1.59
HMGA1P4-201ENST00000428643 HNRNPA3P51991 378 aaKnown RBP5.09□□□□□ -1.59
HMGA1P4-201ENST00000428643 PTTG1IPP53801 180 aa5.09□□□□□ -1.59
HMGA1P4-201ENST00000428643 ADAMTSL4-AS1Q5T5F5 129 aa5.09□□□□□ -1.59
HMGA1P4-201ENST00000428643 Q6ZRP5 223 aa5.09□□□□□ -1.59
HMGA1P4-201ENST00000428643 LITAFQ99732 161 aa5.09□□□□□ -1.59
HMGA1P4-201ENST00000428643 MIEN1Q9BRT3 115 aa5.09□□□□□ -1.59
HMGA1P4-201ENST00000428643 SND1-IT1Q9HBX3 110 aa5.09□□□□□ -1.59
HMGA1P4-201ENST00000428643 NPC2P61916 151 aa5.08□□□□□ -1.6
HMGA1P4-201ENST00000428643 SRSF9Q13242 221 aaKnown RBP eCLIP5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms