RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 SH2D1AO60880 128 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 TP53RKQ96S44 253 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 NAA38Q9BRA0 125 aaKnown RBP1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 DNAH8Q96JB1 4490 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 A0A0G2JQZ4 141 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 SMIM6P0DI80 62 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 RNASE13Q5GAN3 156 aaKnown RBP1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 GPX7Q96SL4 187 aaPredicted RBP1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 C22orf24Q9Y442 160 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 IGHV6-1A0A0B4J1U7 121 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 MYMXA0A1B0GTQ4 84 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 PAGE4O60829 102 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 NCR2O95944 276 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 ZFAND2AQ8N6M9 145 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 NEXN-AS1Q8NBZ9 246 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 RBKSQ9H477 322 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 HUWE1Q7Z6Z7 4374 aaKnown RBP1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 DENND4CQ5VZ89 1909 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 PLA2G10O15496 165 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 SNAI2O43623 268 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 NMBP08949 121 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 LCE1DQ5T752 114 aa1.7□□□□□ -2.14
CCDC88A-205ENST00000426576 A0A1B0GV72 72 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 FAM168BA1KXE4 195 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 PDE6DO43924 150 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 FABP5Q01469 135 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 RNF151Q2KHN1 245 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 LCE3BQ5TA77 95 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 Q6P435 159 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 Q9BRP9 147 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 MAGIXQ9H6Y5 334 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 PYGO1Q9Y3Y4 419 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 LOC107984156A0A0G2JMH3 177 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 TRBV30A0A0K0K1B3 111 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 PGPEP1LA6NFU8 196 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 LINC01549A6NIU2 74 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 FXYD1O00168 92 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 GNGT1P63211 74 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 WT1-ASQ06250 92 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 ARL17AQ8IVW1 177 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 Q8N3U1 123 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 HIST1H2BAQ96A08 127 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 RAB37Q96AX2 223 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 AGPAT4-IT1Q9H0P7 198 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 TRBV6-7A0A0A0MS04 114 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 NDUFC2-KCTD14E9PQ53 114 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 K7EIM0 57 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 IGLC1P0CG04 106 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 PLNP26678 52 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 FAM213BQ8TBF2 198 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 SMCR5Q8TEV8 140 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 DHRS4-AS1Q9P1J3 65 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 ALMS1Q8TCU4 4167 aa1.69□□□□□ -2.14
CCDC88A-205ENST00000426576 RBAKDNA6NC62 111 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 FAM229BQ4G0N7 80 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 NDUFA4L2Q9NRX3 87 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 IGLC7A0M8Q6 106 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 RPL23P62829 140 aaKnown RBP1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 KRTAP20-1Q3LI63 56 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 Q8N6K4 173 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 FAM218AQ96MZ4 157 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 MED28Q9H204 178 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 RPP21Q9H633 154 aaKnown RBP1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 SERP1Q9Y6X1 66 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 EML5Q05BV3 1969 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 SMIM27A0A1W2PRY6 76 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 A4D1N5 150 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 KRBOX1C9JBD0 128 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 F8VRH5 84 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 M0R378 163 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 COX7BP24311 80 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 DDTP30046 118 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 LINC00313P59037 77 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 KRTDAPP60985 99 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 KRTAP4-11Q9BYQ6 195 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 KIAA1549LQ6ZVL6 1849 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 MT-ND4LP03901 98 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 HIST3H3Q16695 136 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 TMEM170AQ8WVE7 144 aa1.68□□□□□ -2.14
CCDC88A-205ENST00000426576 PYYP10082 97 aa1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 ZNF345Q14585 488 aa1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 RNASE8Q8TDE3 154 aaKnown RBP1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 TRBV9A0A0B4J1U6 114 aa1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 C5orf52A6NGY3 159 aa1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 BAALC-AS2P0C853 105 aa1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 Q6JHZ5 121 aa1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 ALKAL2Q6UX46 152 aa1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 FAM210AQ96ND0 272 aa1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 LOC100130705A0A1B0GUX0 176 aa1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 H7C423 109 aa1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 WFDC13Q8IUB5 93 aa1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 A0A087X0K7 114 aa1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 SYS1-DBNDD2H3BUS1 97 aa1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 NDUFC1O43677 76 aa1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 TYMSP04818 313 aa1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 NPC2P61916 151 aa1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 RSPO1Q2MKA7 263 aaPredicted RBP1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 COX7B2Q8TF08 81 aa1.67□□□□□ -2.14
CCDC88A-205ENST00000426576 ANKRD36A6QL64 1941 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 141.5 ms