RNA–Protein interactions for RNA: ENST00000424804.6

VRK3-203, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-203ENST00000424804 URB1-AS1Q96HZ7 61 aa8.08□□□□□ -1.12
VRK3-203ENST00000424804 LINC01600Q96MT4 127 aa8.08□□□□□ -1.12
VRK3-203ENST00000424804 MRPL35Q9NZE8 188 aaKnown RBP8.08□□□□□ -1.12
VRK3-203ENST00000424804 HBDP02042 147 aa8.07□□□□□ -1.12
VRK3-203ENST00000424804 KRTAP10-8P60410 259 aa8.07□□□□□ -1.12
VRK3-203ENST00000424804 CKS1BP61024 79 aa8.07□□□□□ -1.12
VRK3-203ENST00000424804 PRR3P79522 188 aaKnown RBP8.07□□□□□ -1.12
VRK3-203ENST00000424804 PMVKQ15126 192 aa8.07□□□□□ -1.12
VRK3-203ENST00000424804 GAGE2EQ4V326 116 aa8.07□□□□□ -1.12
VRK3-203ENST00000424804 C6orf226Q5I0X4 101 aa8.07□□□□□ -1.12
VRK3-203ENST00000424804 YPEL4Q96NS1 127 aa8.07□□□□□ -1.12
VRK3-203ENST00000424804 C6orf48Q9UBA6 75 aa8.07□□□□□ -1.12
VRK3-203ENST00000424804 GAGE2DQ9UEU5 116 aa8.07□□□□□ -1.12
VRK3-203ENST00000424804 F8WDY8 70 aa8.06□□□□□ -1.12
VRK3-203ENST00000424804 SRSF9Q13242 221 aaKnown RBP eCLIP8.06□□□□□ -1.12
VRK3-203ENST00000424804 KIAA0087Q14695 138 aa8.06□□□□□ -1.12
VRK3-203ENST00000424804 RNF151Q2KHN1 245 aa8.06□□□□□ -1.12
VRK3-203ENST00000424804 FAM19A3Q7Z5A8 133 aa8.06□□□□□ -1.12
VRK3-203ENST00000424804 LINC01561Q8N1V8 128 aa8.06□□□□□ -1.12
VRK3-203ENST00000424804 CST9LQ9H4G1 147 aa8.06□□□□□ -1.12
VRK3-203ENST00000424804 A0A096LNJ9 63 aa8.05□□□□□ -1.12
VRK3-203ENST00000424804 TINCRA0A1B0GVN0 87 aa8.04□□□□□ -1.12
VRK3-203ENST00000424804 A0A1W2PNN7 141 aa8.04□□□□□ -1.12
VRK3-203ENST00000424804 SPINK8P0C7L1 97 aa8.04□□□□□ -1.12
VRK3-203ENST00000424804 C9orf116Q5BN46 136 aaPredicted RBP8.04□□□□□ -1.12
VRK3-203ENST00000424804 TRBV30A0A0K0K1B3 111 aa8.03□□□□□ -1.12
VRK3-203ENST00000424804 TRGC2P03986 189 aa8.03□□□□□ -1.12
VRK3-203ENST00000424804 Q6ZRP5 223 aa8.03□□□□□ -1.12
VRK3-203ENST00000424804 BAGE3Q86Y29 109 aa8.03□□□□□ -1.12
VRK3-203ENST00000424804 Q8IZM0 81 aa8.03□□□□□ -1.12
VRK3-203ENST00000424804 ATP5LO75964 103 aa8.02□□□□□ -1.13
VRK3-203ENST00000424804 FAM19A5Q7Z5A7 132 aaPredicted RBP8.02□□□□□ -1.13
VRK3-203ENST00000424804 LPAP08519 4548 aa8.01□□□□□ -1.13
VRK3-203ENST00000424804 FAM168BA1KXE4 195 aa8.01□□□□□ -1.13
VRK3-203ENST00000424804 SMIM1B2RUZ4 78 aa8.01□□□□□ -1.13
VRK3-203ENST00000424804 H3BRM9 83 aa8.01□□□□□ -1.13
VRK3-203ENST00000424804 PDZD11Q5EBL8 140 aa8.01□□□□□ -1.13
VRK3-203ENST00000424804 PHF5AQ7RTV0 110 aaKnown RBP8.01□□□□□ -1.13
VRK3-203ENST00000424804 COX7B2Q8TF08 81 aa8.01□□□□□ -1.13
VRK3-203ENST00000424804 NDUFC2-KCTD14E9PQ53 114 aa8□□□□□ -1.13
VRK3-203ENST00000424804 HSBP1O75506 76 aa8□□□□□ -1.13
VRK3-203ENST00000424804 TLX1NBP0CAT3 122 aa8□□□□□ -1.13
VRK3-203ENST00000424804 CHCHD1Q96BP2 118 aaKnown RBP8□□□□□ -1.13
VRK3-203ENST00000424804 IGLV5-45A0A087WSX0 123 aa7.99□□□□□ -1.13
VRK3-203ENST00000424804 F8VRH5 84 aa7.99□□□□□ -1.13
VRK3-203ENST00000424804 SPINK6Q6UWN8 80 aa7.99□□□□□ -1.13
VRK3-203ENST00000424804 FAM19A2Q8N3H0 131 aa7.99□□□□□ -1.13
VRK3-203ENST00000424804 H0Y8G0 127 aa7.98□□□□□ -1.13
VRK3-203ENST00000424804 SCO1O75880 301 aa7.98□□□□□ -1.13
VRK3-203ENST00000424804 IGLC3P0DOY3 106 aa7.98□□□□□ -1.13
VRK3-203ENST00000424804 CXCL5P42830 114 aa7.98□□□□□ -1.13
VRK3-203ENST00000424804 TMEM170BQ5T4T1 132 aa7.98□□□□□ -1.13
VRK3-203ENST00000424804 CHTOPQ9Y3Y2 248 aaKnown RBP7.98□□□□□ -1.13
VRK3-203ENST00000424804 ZNF22P17026 224 aaPredicted RBP7.97□□□□□ -1.13
VRK3-203ENST00000424804 IFI27L1Q96BM0 104 aa7.97□□□□□ -1.13
VRK3-203ENST00000424804 XAGE1AQ9HD64 81 aa7.97□□□□□ -1.13
VRK3-203ENST00000424804 C11orf86A6NJI1 115 aa7.96□□□□□ -1.14
VRK3-203ENST00000424804 COLCA2A8K830 154 aa7.96□□□□□ -1.14
VRK3-203ENST00000424804 UBE2BP63146 152 aa7.96□□□□□ -1.14
VRK3-203ENST00000424804 C9orf129Q5T035 196 aaKnown RBP7.96□□□□□ -1.14
VRK3-203ENST00000424804 M0QXV9 152 aa7.95□□□□□ -1.14
VRK3-203ENST00000424804 SERF1AO75920 110 aa7.95□□□□□ -1.14
VRK3-203ENST00000424804 C1orf137Q5JT78 98 aa7.95□□□□□ -1.14
VRK3-203ENST00000424804 PSORS1C2Q9UIG4 136 aa7.94□□□□□ -1.14
VRK3-203ENST00000424804 LEPROTL1O95214 131 aa7.92□□□□□ -1.14
VRK3-203ENST00000424804 FABP4P15090 132 aa7.92□□□□□ -1.14
VRK3-203ENST00000424804 PFN2P35080 140 aa7.92□□□□□ -1.14
VRK3-203ENST00000424804 REG3GQ6UW15 175 aa7.92□□□□□ -1.14
VRK3-203ENST00000424804 ZNF625Q96I27 306 aaPredicted RBP7.92□□□□□ -1.14
VRK3-203ENST00000424804 TRAV12-1A0A0B4J245 112 aa7.91□□□□□ -1.14
VRK3-203ENST00000424804 IGLV5-39A0A0G2JS06 123 aa7.91□□□□□ -1.14
VRK3-203ENST00000424804 NUPR1O60356 82 aa7.91□□□□□ -1.14
VRK3-203ENST00000424804 LINC00310P59036 64 aa7.91□□□□□ -1.14
VRK3-203ENST00000424804 KRTAP11-1Q8IUC1 163 aa7.91□□□□□ -1.14
VRK3-203ENST00000424804 KRTAP7-1Q8IUC3 87 aa7.91□□□□□ -1.14
VRK3-203ENST00000424804 C22orf24Q9Y442 160 aa7.89□□□□□ -1.15
VRK3-203ENST00000424804 HSPB8Q9UJY1 196 aa7.88□□□□□ -1.15
VRK3-203ENST00000424804 ERG28Q9UKR5 140 aa7.88□□□□□ -1.15
VRK3-203ENST00000424804 A0A0U1RRA0 63 aa7.87□□□□□ -1.15
VRK3-203ENST00000424804 TMEM223A0PJW6 202 aa7.87□□□□□ -1.15
VRK3-203ENST00000424804 GAGE10A6NGK3 116 aa7.87□□□□□ -1.15
VRK3-203ENST00000424804 LBHQ53QV2 105 aaPredicted RBP7.87□□□□□ -1.15
VRK3-203ENST00000424804 IGLV7-43P04211 117 aa7.86□□□□□ -1.15
VRK3-203ENST00000424804 NKAPP1Q8N9T2 125 aa7.86□□□□□ -1.15
VRK3-203ENST00000424804 PMCHL2Q9BQD1 86 aa7.86□□□□□ -1.15
VRK3-203ENST00000424804 HIST1H2BKO60814 126 aa7.85□□□□□ -1.15
VRK3-203ENST00000424804 HIST1H2BJP06899 126 aa7.85□□□□□ -1.15
VRK3-203ENST00000424804 HIST1H2BOP23527 126 aa7.85□□□□□ -1.15
VRK3-203ENST00000424804 HIST1H2BBP33778 126 aa7.85□□□□□ -1.15
VRK3-203ENST00000424804 LINC00158P58513 81 aa7.85□□□□□ -1.15
VRK3-203ENST00000424804 HIST1H2BDP58876 126 aa7.85□□□□□ -1.15
VRK3-203ENST00000424804 HIST1H2BCP62807 126 aa7.85□□□□□ -1.15
VRK3-203ENST00000424804 HIST2H2BEQ16778 126 aa7.85□□□□□ -1.15
VRK3-203ENST00000424804 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.85□□□□□ -1.15
VRK3-203ENST00000424804 MRPL55Q7Z7F7 128 aaKnown RBP7.85□□□□□ -1.15
VRK3-203ENST00000424804 HIST1H2BHQ93079 126 aa7.85□□□□□ -1.15
VRK3-203ENST00000424804 HIST1H2BNQ99877 126 aa7.85□□□□□ -1.15
VRK3-203ENST00000424804 HIST1H2BMQ99879 126 aa7.85□□□□□ -1.15
VRK3-203ENST00000424804 RPL37AP8A6NKH3 93 aa7.84□□□□□ -1.15
VRK3-203ENST00000424804 MEIG1Q5JSS6 88 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms