RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 C6orf226Q5I0X4 101 aa7.72□□□□□ -1.17
LIMS1-207ENST00000422797 CSNK1G2-AS1Q8NCQ2 148 aa7.72□□□□□ -1.17
LIMS1-207ENST00000422797 LECT2O14960 151 aa7.71□□□□□ -1.18
LIMS1-207ENST00000422797 IGLV4-60A0A075B6I1 120 aa7.7□□□□□ -1.18
LIMS1-207ENST00000422797 H3BQ85 93 aa7.7□□□□□ -1.18
LIMS1-207ENST00000422797 LINC00612Q8N6U2 182 aa7.7□□□□□ -1.18
LIMS1-207ENST00000422797 OR13C6PQ8NH95 151 aa7.7□□□□□ -1.18
LIMS1-207ENST00000422797 CSPG4Q6UVK1 2322 aa7.7□□□□□ -1.18
LIMS1-207ENST00000422797 USP9YO00507 2555 aaPredicted RBP7.7□□□□□ -1.18
LIMS1-207ENST00000422797 TMEM256-PLSCR3K7ERE1 68 aa7.69□□□□□ -1.18
LIMS1-207ENST00000422797 CCKP06307 115 aa7.69□□□□□ -1.18
LIMS1-207ENST00000422797 C4orf48Q5BLP8 95 aa7.69□□□□□ -1.18
LIMS1-207ENST00000422797 C14orf132Q9NPU4 83 aa7.69□□□□□ -1.18
LIMS1-207ENST00000422797 C19orf73Q9NVV2 129 aa7.69□□□□□ -1.18
LIMS1-207ENST00000422797 CREBBPQ92793 2442 aa7.69□□□□□ -1.18
LIMS1-207ENST00000422797 LOC100131303A0A0U1RQF7 123 aa7.68□□□□□ -1.18
LIMS1-207ENST00000422797 SMIM9A6NGZ8 99 aa7.68□□□□□ -1.18
LIMS1-207ENST00000422797 J3KT08 172 aa7.68□□□□□ -1.18
LIMS1-207ENST00000422797 PFN2P35080 140 aa7.68□□□□□ -1.18
LIMS1-207ENST00000422797 RPS28P62857 69 aaKnown RBP7.68□□□□□ -1.18
LIMS1-207ENST00000422797 SERP2Q8N6R1 65 aa7.68□□□□□ -1.18
LIMS1-207ENST00000422797 C2orf48Q96LS8 159 aa7.68□□□□□ -1.18
LIMS1-207ENST00000422797 CR1P17927 2039 aa7.68□□□□□ -1.18
LIMS1-207ENST00000422797 SORL1Q92673 2214 aa7.68□□□□□ -1.18
LIMS1-207ENST00000422797 IGKV3OR2-268A0A0C4DH90 116 aa7.68□□□□□ -1.18
LIMS1-207ENST00000422797 TRBV10-3A0A0K0K1G6 114 aa7.68□□□□□ -1.18
LIMS1-207ENST00000422797 RELNP78509 3460 aa7.68□□□□□ -1.18
LIMS1-207ENST00000422797 RNASE1P07998 156 aaKnown RBP7.67□□□□□ -1.18
LIMS1-207ENST00000422797 RPL35AP18077 110 aaKnown RBP7.67□□□□□ -1.18
LIMS1-207ENST00000422797 TMEM258P61165 79 aa7.67□□□□□ -1.18
LIMS1-207ENST00000422797 CFAP161Q6P656 301 aa7.67□□□□□ -1.18
LIMS1-207ENST00000422797 IGHV4-28A0A0C4DH34 117 aa7.66□□□□□ -1.18
LIMS1-207ENST00000422797 LINC00846Q9NV44 126 aa7.66□□□□□ -1.18
LIMS1-207ENST00000422797 hADV29S1A0JD25 119 aa7.65□□□□□ -1.18
LIMS1-207ENST00000422797 BCE1O60756 84 aa7.65□□□□□ -1.18
LIMS1-207ENST00000422797 CD164L2Q6UWJ8 174 aa7.65□□□□□ -1.18
LIMS1-207ENST00000422797 Q8N814 137 aa7.65□□□□□ -1.18
LIMS1-207ENST00000422797 PRO0255Q9UI72 69 aa7.65□□□□□ -1.18
LIMS1-207ENST00000422797 NCR3O14931 201 aa7.64□□□□□ -1.19
LIMS1-207ENST00000422797 GYPEP15421 78 aa7.64□□□□□ -1.19
LIMS1-207ENST00000422797 ABCA12Q86UK0 2595 aa7.64□□□□□ -1.19
LIMS1-207ENST00000422797 LYRM9A8MSI8 78 aa7.63□□□□□ -1.19
LIMS1-207ENST00000422797 XCL1P47992 114 aa7.63□□□□□ -1.19
LIMS1-207ENST00000422797 IGKV3D-7A0A0C4DH55 119 aa7.62□□□□□ -1.19
LIMS1-207ENST00000422797 USP17L23D6RBM5 183 aa7.62□□□□□ -1.19
LIMS1-207ENST00000422797 NDUFC2-KCTD14E9PQ53 114 aa7.62□□□□□ -1.19
LIMS1-207ENST00000422797 GHRHP01286 108 aa7.62□□□□□ -1.19
LIMS1-207ENST00000422797 PDE6GP18545 87 aa7.62□□□□□ -1.19
LIMS1-207ENST00000422797 LYPD5Q6UWN5 251 aa7.62□□□□□ -1.19
LIMS1-207ENST00000422797 LINC01006Q8NI28 216 aa7.62□□□□□ -1.19
LIMS1-207ENST00000422797 UBL5Q9BZL1 73 aa7.62□□□□□ -1.19
LIMS1-207ENST00000422797 C2CD3Q4AC94 2353 aa7.62□□□□□ -1.19
LIMS1-207ENST00000422797 NBPF19A0A087WUL8 3843 aa7.62□□□□□ -1.19
LIMS1-207ENST00000422797 SPG11Q96JI7 2443 aa7.62□□□□□ -1.19
LIMS1-207ENST00000422797 KRTAP10-9P60411 292 aa7.61□□□□□ -1.19
LIMS1-207ENST00000422797 ESM1Q9NQ30 184 aa7.61□□□□□ -1.19
LIMS1-207ENST00000422797 SVEP1Q4LDE5 3571 aa7.61□□□□□ -1.19
LIMS1-207ENST00000422797 LOC110117498A0A087WWA1 95 aa7.6□□□□□ -1.19
LIMS1-207ENST00000422797 DEFB130BP0DP73 79 aa7.6□□□□□ -1.19
LIMS1-207ENST00000422797 DEFB130AP0DP74 79 aa7.6□□□□□ -1.19
LIMS1-207ENST00000422797 NANOS2P60321 138 aaKnown RBP7.6□□□□□ -1.19
LIMS1-207ENST00000422797 KIAA0087Q14695 138 aa7.6□□□□□ -1.19
LIMS1-207ENST00000422797 C9orf129Q5T035 196 aaKnown RBP7.6□□□□□ -1.19
LIMS1-207ENST00000422797 WFDC10AQ9H1F0 79 aa7.6□□□□□ -1.19
LIMS1-207ENST00000422797 ITPR2Q14571 2701 aa7.6□□□□□ -1.19
LIMS1-207ENST00000422797 FBN2P35556 2912 aa7.59□□□□□ -1.19
LIMS1-207ENST00000422797 CELSR1Q9NYQ6 3014 aa7.59□□□□□ -1.19
LIMS1-207ENST00000422797 ZNF561-AS1K7EIQ3 104 aa7.59□□□□□ -1.19
LIMS1-207ENST00000422797 C3orf56Q8N813 242 aa7.59□□□□□ -1.19
LIMS1-207ENST00000422797 UPK3BQ9BT76 320 aa7.59□□□□□ -1.19
LIMS1-207ENST00000422797 SLPIP03973 132 aa7.58□□□□□ -1.2
LIMS1-207ENST00000422797 CHCHD10Q8WYQ3 142 aaPredicted RBP7.58□□□□□ -1.2
LIMS1-207ENST00000422797 C11orf68Q9H3H3 251 aaKnown RBP7.58□□□□□ -1.2
LIMS1-207ENST00000422797 LINC00575Q6W349 94 aa7.57□□□□□ -1.2
LIMS1-207ENST00000422797 UTP20O75691 2785 aaKnown RBP7.57□□□□□ -1.2
LIMS1-207ENST00000422797 RBM3P98179 157 aaKnown RBP7.56□□□□□ -1.2
LIMS1-207ENST00000422797 REG3AQ06141 175 aa7.56□□□□□ -1.2
LIMS1-207ENST00000422797 C6orf223Q8N319 242 aa7.56□□□□□ -1.2
LIMS1-207ENST00000422797 X6R8D5 127 aa7.56□□□□□ -1.2
LIMS1-207ENST00000422797 GVQW2A0A096LPI5 108 aaPredicted RBP7.55□□□□□ -1.2
LIMS1-207ENST00000422797 A0A0J9YWU9 116 aa7.55□□□□□ -1.2
LIMS1-207ENST00000422797 IGHV4-30-4P0DP06 118 aa7.55□□□□□ -1.2
LIMS1-207ENST00000422797 KRTAP21-3Q3LHN1 58 aa7.55□□□□□ -1.2
LIMS1-207ENST00000422797 C6orf99Q4VX62 202 aa7.55□□□□□ -1.2
LIMS1-207ENST00000422797 LCE3BQ5TA77 95 aa7.55□□□□□ -1.2
LIMS1-207ENST00000422797 LINC00269Q8N2A0 174 aa7.55□□□□□ -1.2
LIMS1-207ENST00000422797 ZFHX3Q15911 3703 aa7.54□□□□□ -1.2
LIMS1-207ENST00000422797 HILS1P60008 231 aa7.54□□□□□ -1.2
LIMS1-207ENST00000422797 A0A087WVE0 104 aa7.53□□□□□ -1.2
LIMS1-207ENST00000422797 TRBV7-6A0A0J9YX20 115 aa7.53□□□□□ -1.2
LIMS1-207ENST00000422797 ANGP03950 147 aaKnown RBP7.53□□□□□ -1.2
LIMS1-207ENST00000422797 APOC4P55056 127 aa7.53□□□□□ -1.2
LIMS1-207ENST00000422797 SPAG11BQ08648 103 aa7.53□□□□□ -1.2
LIMS1-207ENST00000422797 C9orf66Q5T8R8 295 aa7.53□□□□□ -1.2
LIMS1-207ENST00000422797 Q6ZQT0 140 aa7.53□□□□□ -1.2
LIMS1-207ENST00000422797 WFDC11Q8NEX6 87 aa7.53□□□□□ -1.2
LIMS1-207ENST00000422797 IGLV6-57P01721 117 aa7.52□□□□□ -1.2
LIMS1-207ENST00000422797 C5orf47Q569G3 176 aa7.52□□□□□ -1.2
LIMS1-207ENST00000422797 LINC00482Q8N8I6 264 aa7.52□□□□□ -1.2
LIMS1-207ENST00000422797 DPH3Q96FX2 82 aa7.52□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms