RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 TMEM238C9JI98 176 aa11.35□□□□□ -0.59
CCDC28B-202ENST00000421922 USP17L23D6RBM5 183 aa11.35□□□□□ -0.59
CCDC28B-202ENST00000421922 C6orf223Q8N319 242 aa11.35□□□□□ -0.59
CCDC28B-202ENST00000421922 LYSTQ99698 3801 aa11.35□□□□□ -0.59
CCDC28B-202ENST00000421922 DNAH1Q9P2D7 4330 aa11.35□□□□□ -0.59
CCDC28B-202ENST00000421922 LINC00587B1AMM8 73 aa11.35□□□□□ -0.59
CCDC28B-202ENST00000421922 KIAA0087Q14695 138 aa11.35□□□□□ -0.59
CCDC28B-202ENST00000421922 C2orf91Q6ZV80 131 aa11.35□□□□□ -0.59
CCDC28B-202ENST00000421922 CAMK2N2Q96S95 79 aa11.35□□□□□ -0.59
CCDC28B-202ENST00000421922 GVQW2A0A096LPI5 108 aaPredicted RBP11.34□□□□□ -0.59
CCDC28B-202ENST00000421922 C14orf177Q52M58 125 aa11.34□□□□□ -0.59
CCDC28B-202ENST00000421922 C2orf82Q6UX34 121 aa11.34□□□□□ -0.59
CCDC28B-202ENST00000421922 Q6ZR54 194 aa11.34□□□□□ -0.59
CCDC28B-202ENST00000421922 LINC00526Q96FQ7 95 aa11.34□□□□□ -0.59
CCDC28B-202ENST00000421922 KRTAP17-1Q9BYP8 105 aa11.34□□□□□ -0.59
CCDC28B-202ENST00000421922 LECT2O14960 151 aa11.33□□□□□ -0.6
CCDC28B-202ENST00000421922 CTAG1AP78358 180 aa11.33□□□□□ -0.6
CCDC28B-202ENST00000421922 SRSF9Q13242 221 aaKnown RBP eCLIP11.33□□□□□ -0.6
CCDC28B-202ENST00000421922 C2orf48Q96LS8 159 aa11.33□□□□□ -0.6
CCDC28B-202ENST00000421922 HIST1H4GQ99525 98 aa11.33□□□□□ -0.6
CCDC28B-202ENST00000421922 F8WDY8 70 aa11.32□□□□□ -0.6
CCDC28B-202ENST00000421922 C1orf134Q5TEV5 83 aa11.32□□□□□ -0.6
CCDC28B-202ENST00000421922 NTN5Q8WTR8 489 aaPredicted RBP11.32□□□□□ -0.6
CCDC28B-202ENST00000421922 TIMM17BO60830 172 aa11.31□□□□□ -0.6
CCDC28B-202ENST00000421922 HSD52Q0P140 79 aa11.31□□□□□ -0.6
CCDC28B-202ENST00000421922 VPS13DQ5THJ4 4388 aa11.31□□□□□ -0.6
CCDC28B-202ENST00000421922 ERG28Q9UKR5 140 aa11.3□□□□□ -0.6
CCDC28B-202ENST00000421922 ALMS1Q8TCU4 4167 aa11.29□□□□□ -0.6
CCDC28B-202ENST00000421922 A0A0U1RRA0 63 aa11.29□□□□□ -0.6
CCDC28B-202ENST00000421922 LINC00158P58513 81 aa11.29□□□□□ -0.6
CCDC28B-202ENST00000421922 UNQ6190/PRO20217Q6UXQ8 127 aa11.29□□□□□ -0.6
CCDC28B-202ENST00000421922 SPANXB1Q9NS25 103 aaPredicted RBP11.29□□□□□ -0.6
CCDC28B-202ENST00000421922 M0R143 59 aa11.28□□□□□ -0.6
CCDC28B-202ENST00000421922 SMIM13P0DJ93 91 aa11.28□□□□□ -0.6
CCDC28B-202ENST00000421922 SYCNQ0VAF6 134 aa11.28□□□□□ -0.6
CCDC28B-202ENST00000421922 TAL2Q16559 108 aa11.28□□□□□ -0.6
CCDC28B-202ENST00000421922 TRBV30A0A0K0K1B3 111 aa11.27□□□□□ -0.6
CCDC28B-202ENST00000421922 GCSHP23434 173 aa11.27□□□□□ -0.6
CCDC28B-202ENST00000421922 PFN2P35080 140 aa11.27□□□□□ -0.6
CCDC28B-202ENST00000421922 COPS9Q8WXC6 57 aa11.27□□□□□ -0.6
CCDC28B-202ENST00000421922 LCE6AA0A183 80 aa11.26□□□□□ -0.61
CCDC28B-202ENST00000421922 Q6ZRN7 208 aaPredicted RBP11.26□□□□□ -0.61
CCDC28B-202ENST00000421922 Q6ZVH6 145 aa11.26□□□□□ -0.61
CCDC28B-202ENST00000421922 CARD19Q96LW7 228 aa11.26□□□□□ -0.61
CCDC28B-202ENST00000421922 SPANXDQ9BXN6 97 aa11.26□□□□□ -0.61
CCDC28B-202ENST00000421922 SPANXCQ9NY87 97 aa11.26□□□□□ -0.61
CCDC28B-202ENST00000421922 COX17Q14061 63 aa11.26□□□□□ -0.61
CCDC28B-202ENST00000421922 C10orf25Q5T742 122 aa11.26□□□□□ -0.61
CCDC28B-202ENST00000421922 Q6ZRU5 148 aa11.26□□□□□ -0.61
CCDC28B-202ENST00000421922 HINT1P49773 126 aaPredicted RBP11.25□□□□□ -0.61
CCDC28B-202ENST00000421922 PTTG1IPP53801 180 aa11.25□□□□□ -0.61
CCDC28B-202ENST00000421922 BATFQ16520 125 aa11.25□□□□□ -0.61
CCDC28B-202ENST00000421922 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.24□□□□□ -0.61
CCDC28B-202ENST00000421922 WFDC2Q14508 124 aa11.24□□□□□ -0.61
CCDC28B-202ENST00000421922 CEND1Q8N111 149 aa11.24□□□□□ -0.61
CCDC28B-202ENST00000421922 DAND5Q8N907 189 aa11.24□□□□□ -0.61
CCDC28B-202ENST00000421922 LITAFQ99732 161 aa11.24□□□□□ -0.61
CCDC28B-202ENST00000421922 C6orf48Q9UBA6 75 aa11.24□□□□□ -0.61
CCDC28B-202ENST00000421922 EREGO14944 169 aa11.23□□□□□ -0.61
CCDC28B-202ENST00000421922 IFITM1P13164 125 aa11.23□□□□□ -0.61
CCDC28B-202ENST00000421922 NPC2P61916 151 aa11.23□□□□□ -0.61
CCDC28B-202ENST00000421922 C9orf116Q5BN46 136 aaPredicted RBP11.23□□□□□ -0.61
CCDC28B-202ENST00000421922 MIR7-3HGQ8N6C7 128 aa11.23□□□□□ -0.61
CCDC28B-202ENST00000421922 TMEM238LA0A1B0GVL6 79 aa11.22□□□□□ -0.61
CCDC28B-202ENST00000421922 A6NJY4 79 aa11.22□□□□□ -0.61
CCDC28B-202ENST00000421922 RPL24P83731 157 aaKnown RBP11.22□□□□□ -0.61
CCDC28B-202ENST00000421922 ADAMTSL4-AS1Q5T5F5 129 aa11.22□□□□□ -0.61
CCDC28B-202ENST00000421922 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.21□□□□□ -0.61
CCDC28B-202ENST00000421922 LRCOL1A6NCL2 159 aa11.2□□□□□ -0.62
CCDC28B-202ENST00000421922 RNF151Q2KHN1 245 aa11.2□□□□□ -0.62
CCDC28B-202ENST00000421922 MUSTN1Q8IVN3 82 aa11.2□□□□□ -0.62
CCDC28B-202ENST00000421922 A0A087WTM6 91 aa11.19□□□□□ -0.62
CCDC28B-202ENST00000421922 BVES-AS1Q5T3Y7 98 aa11.19□□□□□ -0.62
CCDC28B-202ENST00000421922 Q8N814 137 aa11.18□□□□□ -0.62
CCDC28B-202ENST00000421922 LINC00308Q8TCZ7 52 aa11.18□□□□□ -0.62
CCDC28B-202ENST00000421922 A6NDN8 102 aa11.18□□□□□ -0.62
CCDC28B-202ENST00000421922 CNBPP62633 177 aaKnown RBP11.18□□□□□ -0.62
CCDC28B-202ENST00000421922 NDUFC2-KCTD14E9PQ53 114 aa11.17□□□□□ -0.62
CCDC28B-202ENST00000421922 FXYD2P54710 66 aa11.17□□□□□ -0.62
CCDC28B-202ENST00000421922 RPL18AQ02543 176 aaKnown RBP11.17□□□□□ -0.62
CCDC28B-202ENST00000421922 PKIGQ9Y2B9 76 aa11.17□□□□□ -0.62
CCDC28B-202ENST00000421922 HYDINQ4G0P3 5121 aa11.16□□□□□ -0.62
CCDC28B-202ENST00000421922 SLPIP03973 132 aa11.16□□□□□ -0.62
CCDC28B-202ENST00000421922 DNAH6Q9C0G6 4158 aa11.16□□□□□ -0.62
CCDC28B-202ENST00000421922 LOC107984640A0A0U1RRK4 108 aa11.15□□□□□ -0.62
CCDC28B-202ENST00000421922 SNHG12Q9BXW3 62 aa11.15□□□□□ -0.62
CCDC28B-202ENST00000421922 SND1-IT1Q9HBX3 110 aa11.15□□□□□ -0.62
CCDC28B-202ENST00000421922 NHP2Q9NX24 153 aaKnown RBP11.15□□□□□ -0.62
CCDC28B-202ENST00000421922 A4D1N5 150 aa11.14□□□□□ -0.63
CCDC28B-202ENST00000421922 GAGE2EQ4V326 116 aa11.14□□□□□ -0.63
CCDC28B-202ENST00000421922 GAGE2DQ9UEU5 116 aa11.14□□□□□ -0.63
CCDC28B-202ENST00000421922 TLX1NBP0CAT3 122 aa11.13□□□□□ -0.63
CCDC28B-202ENST00000421922 PPDPFQ9H3Y8 114 aa11.13□□□□□ -0.63
CCDC28B-202ENST00000421922 RAB37Q96AX2 223 aa11.12□□□□□ -0.63
CCDC28B-202ENST00000421922 RTL8CO15255 209 aa11.11□□□□□ -0.63
CCDC28B-202ENST00000421922 TNP2Q05952 138 aa11.11□□□□□ -0.63
CCDC28B-202ENST00000421922 SOSTDC1Q6X4U4 206 aa11.11□□□□□ -0.63
CCDC28B-202ENST00000421922 KMT2AQ03164 3969 aa11.11□□□□□ -0.63
CCDC28B-202ENST00000421922 GAGE2BQ13066 116 aa11.1□□□□□ -0.63
CCDC28B-202ENST00000421922 COL5A1-AS1Q5SY13 56 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 235.3 ms