RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 DNAH7Q8WXX0 4024 aa4.05□□□□□ -1.76
HMGB3-202ENST00000419110 GAGE12HA6NDE8 117 aa4.04□□□□□ -1.76
HMGB3-202ENST00000419110 HERV-K104P63124 156 aa4.04□□□□□ -1.76
HMGB3-202ENST00000419110 CTAG1AP78358 180 aa4.04□□□□□ -1.76
HMGB3-202ENST00000419110 COX6A2Q02221 97 aa4.04□□□□□ -1.76
HMGB3-202ENST00000419110 BATFQ16520 125 aa4.04□□□□□ -1.76
HMGB3-202ENST00000419110 C5orf38Q86SI9 138 aa4.04□□□□□ -1.76
HMGB3-202ENST00000419110 KRTAP4-5Q9BYR2 181 aa4.04□□□□□ -1.76
HMGB3-202ENST00000419110 Q9HAA7 133 aa4.04□□□□□ -1.76
HMGB3-202ENST00000419110 APLNQ9ULZ1 77 aa4.04□□□□□ -1.76
HMGB3-202ENST00000419110 FBN3Q75N90 2809 aa4.04□□□□□ -1.76
HMGB3-202ENST00000419110 IGKV2D-24A0A075B6R9 120 aa4.03□□□□□ -1.76
HMGB3-202ENST00000419110 SPAG11BQ08648 103 aa4.03□□□□□ -1.76
HMGB3-202ENST00000419110 FOXI1Q12951 378 aa4.03□□□□□ -1.76
HMGB3-202ENST00000419110 TAL2Q16559 108 aa4.03□□□□□ -1.76
HMGB3-202ENST00000419110 MEIG1Q5JSS6 88 aa4.03□□□□□ -1.76
HMGB3-202ENST00000419110 Q8IZM0 81 aa4.03□□□□□ -1.76
HMGB3-202ENST00000419110 MUC7Q8TAX7 377 aa4.03□□□□□ -1.76
HMGB3-202ENST00000419110 COPS9Q8WXC6 57 aa4.03□□□□□ -1.76
HMGB3-202ENST00000419110 WWC2-AS2Q96NR7 200 aa4.03□□□□□ -1.76
HMGB3-202ENST00000419110 HIST1H4GQ99525 98 aa4.03□□□□□ -1.76
HMGB3-202ENST00000419110 Q9H8V8 135 aa4.03□□□□□ -1.76
HMGB3-202ENST00000419110 SPANXB1Q9NS25 103 aaPredicted RBP4.03□□□□□ -1.76
HMGB3-202ENST00000419110 A0A0J9YXY3 114 aa4.02□□□□□ -1.77
HMGB3-202ENST00000419110 A6NDN8 102 aa4.02□□□□□ -1.77
HMGB3-202ENST00000419110 TIMM17BO60830 172 aa4.02□□□□□ -1.77
HMGB3-202ENST00000419110 HINT1P49773 126 aaPredicted RBP4.02□□□□□ -1.77
HMGB3-202ENST00000419110 CKS1BP61024 79 aa4.02□□□□□ -1.77
HMGB3-202ENST00000419110 SRSF9Q13242 221 aaKnown RBP eCLIP4.02□□□□□ -1.77
HMGB3-202ENST00000419110 CIRBPQ14011 172 aaKnown RBP4.02□□□□□ -1.77
HMGB3-202ENST00000419110 LBHQ53QV2 105 aaPredicted RBP4.02□□□□□ -1.77
HMGB3-202ENST00000419110 ENHOQ6UWT2 76 aa4.02□□□□□ -1.77
HMGB3-202ENST00000419110 MAPKAPK5-AS1Q8N8E1 139 aa4.02□□□□□ -1.77
HMGB3-202ENST00000419110 COX11Q9Y6N1 276 aa4.02□□□□□ -1.77
HMGB3-202ENST00000419110 ALMS1Q8TCU4 4167 aa4.02□□□□□ -1.77
HMGB3-202ENST00000419110 IBA57-AS1B1ANH7 110 aa4.01□□□□□ -1.77
HMGB3-202ENST00000419110 PTTG1IPP53801 180 aa4.01□□□□□ -1.77
HMGB3-202ENST00000419110 Q6ZVH6 145 aa4.01□□□□□ -1.77
HMGB3-202ENST00000419110 ZNF625Q96I27 306 aaPredicted RBP4.01□□□□□ -1.77
HMGB3-202ENST00000419110 TM2D2Q9BX73 214 aa4.01□□□□□ -1.77
HMGB3-202ENST00000419110 SPANXDQ9BXN6 97 aa4.01□□□□□ -1.77
HMGB3-202ENST00000419110 KRTAP9-3Q9BYQ3 159 aa4.01□□□□□ -1.77
HMGB3-202ENST00000419110 SPANXCQ9NY87 97 aa4.01□□□□□ -1.77
HMGB3-202ENST00000419110 ZNF561-AS1K7EIQ3 104 aa4□□□□□ -1.77
HMGB3-202ENST00000419110 RPL24P83731 157 aaKnown RBP4□□□□□ -1.77
HMGB3-202ENST00000419110 C6orf226Q5I0X4 101 aa4□□□□□ -1.77
HMGB3-202ENST00000419110 COL5A1-AS1Q5SY13 56 aa4□□□□□ -1.77
HMGB3-202ENST00000419110 BVES-AS1Q5T3Y7 98 aa4□□□□□ -1.77
HMGB3-202ENST00000419110 CEND1Q8N111 149 aa4□□□□□ -1.77
HMGB3-202ENST00000419110 SNHG12Q9BXW3 62 aa4□□□□□ -1.77
HMGB3-202ENST00000419110 GVQW2A0A096LPI5 108 aaPredicted RBP3.99□□□□□ -1.77
HMGB3-202ENST00000419110 F8WDY8 70 aa3.99□□□□□ -1.77
HMGB3-202ENST00000419110 PSCAO43653 123 aa3.99□□□□□ -1.77
HMGB3-202ENST00000419110 IFITM1P13164 125 aa3.99□□□□□ -1.77
HMGB3-202ENST00000419110 ERG28Q9UKR5 140 aa3.99□□□□□ -1.77
HMGB3-202ENST00000419110 STARD9Q9P2P6 4700 aa3.98□□□□□ -1.77
HMGB3-202ENST00000419110 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.98□□□□□ -1.77
HMGB3-202ENST00000419110 NBDYA0A0U1RRE5 68 aa3.98□□□□□ -1.77
HMGB3-202ENST00000419110 C3orf84H3BNL1 204 aa3.98□□□□□ -1.77
HMGB3-202ENST00000419110 FXYD2P54710 66 aa3.98□□□□□ -1.77
HMGB3-202ENST00000419110 HIGD2BQ4VC39 106 aa3.98□□□□□ -1.77
HMGB3-202ENST00000419110 C14orf177Q52M58 125 aa3.98□□□□□ -1.77
HMGB3-202ENST00000419110 C15orf56Q8N910 161 aa3.98□□□□□ -1.77
HMGB3-202ENST00000419110 C2orf48Q96LS8 159 aa3.98□□□□□ -1.77
HMGB3-202ENST00000419110 CAMK2N2Q96S95 79 aa3.98□□□□□ -1.77
HMGB3-202ENST00000419110 NHP2Q9NX24 153 aaKnown RBP3.98□□□□□ -1.77
HMGB3-202ENST00000419110 DNAH6Q9C0G6 4158 aa3.98□□□□□ -1.77
HMGB3-202ENST00000419110 TRBV30A0A0K0K1B3 111 aa3.97□□□□□ -1.77
HMGB3-202ENST00000419110 USP17L23D6RBM5 183 aa3.97□□□□□ -1.77
HMGB3-202ENST00000419110 SMIM13P0DJ93 91 aa3.97□□□□□ -1.77
HMGB3-202ENST00000419110 LINC00158P58513 81 aa3.97□□□□□ -1.77
HMGB3-202ENST00000419110 COX17Q14061 63 aa3.97□□□□□ -1.77
HMGB3-202ENST00000419110 KRTAP26-1Q6PEX3 210 aa3.97□□□□□ -1.77
HMGB3-202ENST00000419110 C2orf82Q6UX34 121 aa3.97□□□□□ -1.77
HMGB3-202ENST00000419110 CARD19Q96LW7 228 aa3.97□□□□□ -1.77
HMGB3-202ENST00000419110 LITAFQ99732 161 aa3.97□□□□□ -1.77
HMGB3-202ENST00000419110 KRTAP1-5Q9BYS1 174 aa3.97□□□□□ -1.77
HMGB3-202ENST00000419110 PPDPFQ9H3Y8 114 aa3.97□□□□□ -1.77
HMGB3-202ENST00000419110 PKIGQ9Y2B9 76 aa3.97□□□□□ -1.77
HMGB3-202ENST00000419110 CSMD3Q7Z407 3707 aa3.97□□□□□ -1.77
HMGB3-202ENST00000419110 VPS13DQ5THJ4 4388 aa3.96□□□□□ -1.77
HMGB3-202ENST00000419110 PLECQ15149 4684 aaKnown RBP3.96□□□□□ -1.78
HMGB3-202ENST00000419110 DNAH1Q9P2D7 4330 aa3.96□□□□□ -1.78
HMGB3-202ENST00000419110 TENM2Q9NT68 2774 aa3.96□□□□□ -1.78
HMGB3-202ENST00000419110 A0A0B4J2C4 111 aa3.96□□□□□ -1.78
HMGB3-202ENST00000419110 A0A0U1RRA0 63 aa3.96□□□□□ -1.78
HMGB3-202ENST00000419110 PFN2P35080 140 aa3.96□□□□□ -1.78
HMGB3-202ENST00000419110 NPC2P61916 151 aa3.96□□□□□ -1.78
HMGB3-202ENST00000419110 KIAA0087Q14695 138 aa3.96□□□□□ -1.78
HMGB3-202ENST00000419110 LYRM7Q5U5X0 104 aa3.96□□□□□ -1.78
HMGB3-202ENST00000419110 MIR7-3HGQ8N6C7 128 aa3.96□□□□□ -1.78
HMGB3-202ENST00000419110 DAND5Q8N907 189 aa3.96□□□□□ -1.78
HMGB3-202ENST00000419110 NTN5Q8WTR8 489 aaPredicted RBP3.96□□□□□ -1.78
HMGB3-202ENST00000419110 LINC00476Q8WZB0 136 aa3.96□□□□□ -1.78
HMGB3-202ENST00000419110 RAB37Q96AX2 223 aa3.96□□□□□ -1.78
HMGB3-202ENST00000419110 TGP01266 2768 aa3.96□□□□□ -1.78
HMGB3-202ENST00000419110 A4D1N5 150 aa3.95□□□□□ -1.78
HMGB3-202ENST00000419110 K7ERJ3 54 aa3.95□□□□□ -1.78
HMGB3-202ENST00000419110 SYCNQ0VAF6 134 aa3.95□□□□□ -1.78
HMGB3-202ENST00000419110 Q1RN00 199 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms