RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ZNF625Q96I27 306 aaPredicted RBP5.8□□□□□ -1.48
USP54-203ENST00000418501 HIVEP1P15822 2718 aa5.79□□□□□ -1.48
USP54-203ENST00000418501 SETXQ7Z333 2677 aaKnown RBP5.79□□□□□ -1.48
USP54-203ENST00000418501 IGKV2D-24A0A075B6R9 120 aa5.79□□□□□ -1.48
USP54-203ENST00000418501 H7C2G1 150 aa5.79□□□□□ -1.48
USP54-203ENST00000418501 C14orf177Q52M58 125 aa5.78□□□□□ -1.48
USP54-203ENST00000418501 LINC00308Q8TCZ7 52 aa5.78□□□□□ -1.48
USP54-203ENST00000418501 IGLV10-54A0A075B6I4 117 aa5.78□□□□□ -1.48
USP54-203ENST00000418501 F8W1H4 67 aa5.78□□□□□ -1.48
USP54-203ENST00000418501 OR13C6PQ8NH95 151 aa5.78□□□□□ -1.48
USP54-203ENST00000418501 PFN2P35080 140 aa5.78□□□□□ -1.48
USP54-203ENST00000418501 SND1-IT1Q9HBX3 110 aa5.78□□□□□ -1.48
USP54-203ENST00000418501 A0A0U1RRA0 63 aa5.77□□□□□ -1.49
USP54-203ENST00000418501 CAMK2N2Q96S95 79 aa5.77□□□□□ -1.49
USP54-203ENST00000418501 K7ERJ3 54 aa5.77□□□□□ -1.49
USP54-203ENST00000418501 RPL13AP40429 203 aaKnown RBP5.77□□□□□ -1.49
USP54-203ENST00000418501 BAHCC1Q9P281 2608 aa5.77□□□□□ -1.49
USP54-203ENST00000418501 MIR7-3HGQ8N6C7 128 aa5.77□□□□□ -1.49
USP54-203ENST00000418501 PRR34Q9NV39 138 aa5.77□□□□□ -1.49
USP54-203ENST00000418501 TRBV30A0A0K0K1B3 111 aa5.76□□□□□ -1.49
USP54-203ENST00000418501 PRB2P02812 416 aaPredicted RBP5.76□□□□□ -1.49
USP54-203ENST00000418501 C2orf48Q96LS8 159 aa5.76□□□□□ -1.49
USP54-203ENST00000418501 NAA38Q9BRA0 125 aaKnown RBP5.76□□□□□ -1.49
USP54-203ENST00000418501 ZNF469Q96JG9 3925 aaPredicted RBP5.76□□□□□ -1.49
USP54-203ENST00000418501 PSCAO43653 123 aa5.76□□□□□ -1.49
USP54-203ENST00000418501 S100A7L2Q5SY68 101 aa5.76□□□□□ -1.49
USP54-203ENST00000418501 MXRA5Q9NR99 2828 aa5.76□□□□□ -1.49
USP54-203ENST00000418501 H0YGX0 51 aa5.76□□□□□ -1.49
USP54-203ENST00000418501 DNAL4O96015 105 aa5.76□□□□□ -1.49
USP54-203ENST00000418501 NPC2P61916 151 aa5.76□□□□□ -1.49
USP54-203ENST00000418501 FAM104AQ969W3 186 aa5.76□□□□□ -1.49
USP54-203ENST00000418501 NACAE9PAV3 2078 aa5.75□□□□□ -1.49
USP54-203ENST00000418501 DNAH10OSP0CZ25 163 aa5.75□□□□□ -1.49
USP54-203ENST00000418501 ESRGQ1W209 222 aa5.75□□□□□ -1.49
USP54-203ENST00000418501 ATRQ13535 2644 aa5.75□□□□□ -1.49
USP54-203ENST00000418501 PRO0461Q9UI25 63 aa5.75□□□□□ -1.49
USP54-203ENST00000418501 MDFIQ99750 246 aa5.75□□□□□ -1.49
USP54-203ENST00000418501 H3BQ85 93 aa5.74□□□□□ -1.49
USP54-203ENST00000418501 KRTAP21-3Q3LHN1 58 aa5.74□□□□□ -1.49
USP54-203ENST00000418501 WFDC10BQ8IUB3 73 aa5.74□□□□□ -1.49
USP54-203ENST00000418501 TEP1Q99973 2627 aaKnown RBP5.74□□□□□ -1.49
USP54-203ENST00000418501 FOXI1Q12951 378 aa5.74□□□□□ -1.49
USP54-203ENST00000418501 UPK3BQ9BT76 320 aa5.74□□□□□ -1.49
USP54-203ENST00000418501 NDUFC2O95298 119 aa5.73□□□□□ -1.49
USP54-203ENST00000418501 TMEM126AQ9H061 195 aa5.73□□□□□ -1.49
USP54-203ENST00000418501 CDIP1Q9H305 208 aa5.73□□□□□ -1.49
USP54-203ENST00000418501 CYSRT1A8MQ03 144 aa5.73□□□□□ -1.49
USP54-203ENST00000418501 SLC25A20O43772 301 aa5.73□□□□□ -1.49
USP54-203ENST00000418501 WFDC2Q14508 124 aa5.73□□□□□ -1.49
USP54-203ENST00000418501 Q9HAA7 133 aa5.73□□□□□ -1.49
USP54-203ENST00000418501 GVQW2A0A096LPI5 108 aaPredicted RBP5.72□□□□□ -1.49
USP54-203ENST00000418501 CARD19Q96LW7 228 aa5.72□□□□□ -1.49
USP54-203ENST00000418501 SYCNQ0VAF6 134 aa5.71□□□□□ -1.5
USP54-203ENST00000418501 MTURNQ8N3F0 131 aa5.71□□□□□ -1.5
USP54-203ENST00000418501 LITAFQ99732 161 aa5.71□□□□□ -1.5
USP54-203ENST00000418501 ADAMTSL4-AS1Q5T5F5 129 aa5.71□□□□□ -1.5
USP54-203ENST00000418501 ENHOQ6UWT2 76 aa5.71□□□□□ -1.5
USP54-203ENST00000418501 DAND5Q8N907 189 aa5.71□□□□□ -1.5
USP54-203ENST00000418501 OTOGQ6ZRI0 2925 aa5.7□□□□□ -1.5
USP54-203ENST00000418501 NKAPP1Q8N9T2 125 aa5.7□□□□□ -1.5
USP54-203ENST00000418501 TRBV10-2A0A0K0K1G8 114 aa5.69□□□□□ -1.5
USP54-203ENST00000418501 H3BT86 120 aa5.69□□□□□ -1.5
USP54-203ENST00000418501 LINC00588Q9Y4M8 146 aa5.69□□□□□ -1.5
USP54-203ENST00000418501 A0A1B0GX51 115 aa5.69□□□□□ -1.5
USP54-203ENST00000418501 NTN5Q8WTR8 489 aaPredicted RBP5.69□□□□□ -1.5
USP54-203ENST00000418501 ANK3Q12955 4377 aaKnown RBP5.69□□□□□ -1.5
USP54-203ENST00000418501 ASH1LQ9NR48 2969 aaKnown RBP5.69□□□□□ -1.5
USP54-203ENST00000418501 CUBNO60494 3623 aa5.68□□□□□ -1.5
USP54-203ENST00000418501 H3BMG7 143 aa5.68□□□□□ -1.5
USP54-203ENST00000418501 C2orf82Q6UX34 121 aa5.68□□□□□ -1.5
USP54-203ENST00000418501 C9JAW5 83 aa5.68□□□□□ -1.5
USP54-203ENST00000418501 TRACP01848 142 aa5.68□□□□□ -1.5
USP54-203ENST00000418501 LINC01620Q4KN68 170 aa5.68□□□□□ -1.5
USP54-203ENST00000418501 M0QXV9 152 aa5.67□□□□□ -1.5
USP54-203ENST00000418501 RPL28P46779 137 aaKnown RBP5.67□□□□□ -1.5
USP54-203ENST00000418501 ETDBQ3ZM63 59 aa5.67□□□□□ -1.5
USP54-203ENST00000418501 HIGD2BQ4VC39 106 aa5.67□□□□□ -1.5
USP54-203ENST00000418501 SS18L2Q9UHA2 77 aa5.67□□□□□ -1.5
USP54-203ENST00000418501 MT-ATP8P03928 68 aa5.67□□□□□ -1.5
USP54-203ENST00000418501 SMCPP49901 116 aaPredicted RBP5.67□□□□□ -1.5
USP54-203ENST00000418501 PPDPFLQ8WWR9 84 aa5.67□□□□□ -1.5
USP54-203ENST00000418501 XGP55808 180 aa5.67□□□□□ -1.5
USP54-203ENST00000418501 UNQ6190/PRO20217Q6UXQ8 127 aa5.67□□□□□ -1.5
USP54-203ENST00000418501 KIAA0087Q14695 138 aa5.66□□□□□ -1.5
USP54-203ENST00000418501 NDUFC2-KCTD14E9PQ53 114 aa5.66□□□□□ -1.5
USP54-203ENST00000418501 TRIAP1O43715 76 aa5.66□□□□□ -1.5
USP54-203ENST00000418501 INAFM2P0DMQ5 153 aa5.66□□□□□ -1.5
USP54-203ENST00000418501 LOC107984640A0A0U1RRK4 108 aa5.66□□□□□ -1.5
USP54-203ENST00000418501 TCL1BO95988 128 aa5.66□□□□□ -1.5
USP54-203ENST00000418501 M0R378 163 aa5.65□□□□□ -1.5
USP54-203ENST00000418501 ANKRD29Q8N6D5 301 aa5.65□□□□□ -1.5
USP54-203ENST00000418501 LST1O00453 97 aa5.65□□□□□ -1.51
USP54-203ENST00000418501 RPL18AQ02543 176 aaKnown RBP5.64□□□□□ -1.51
USP54-203ENST00000418501 TEN1Q86WV5 123 aa5.64□□□□□ -1.51
USP54-203ENST00000418501 DIRC1Q969H9 104 aa5.64□□□□□ -1.51
USP54-203ENST00000418501 APLNQ9ULZ1 77 aa5.64□□□□□ -1.51
USP54-203ENST00000418501 USP17L23D6RBM5 183 aa5.64□□□□□ -1.51
USP54-203ENST00000418501 CSMD1Q96PZ7 3565 aa5.64□□□□□ -1.51
USP54-203ENST00000418501 ORMDL1Q9P0S3 153 aa5.63□□□□□ -1.51
USP54-203ENST00000418501 MAST4O15021 2626 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms