RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 SLPIP03973 132 aa8.19□□□□□ -1.1
LINC00339-202ENST00000416769 XCL1P47992 114 aa8.19□□□□□ -1.1
LINC00339-202ENST00000416769 HIST1H2BLQ99880 126 aa8.19□□□□□ -1.1
LINC00339-202ENST00000416769 CHTOPQ9Y3Y2 248 aaKnown RBP8.19□□□□□ -1.1
LINC00339-202ENST00000416769 IGHV3OR16-9A0A0B4J2B5 98 aa8.18□□□□□ -1.1
LINC00339-202ENST00000416769 A0A0J9YXV3 536 aa8.18□□□□□ -1.1
LINC00339-202ENST00000416769 IGLC3P0DOY3 106 aa8.18□□□□□ -1.1
LINC00339-202ENST00000416769 HERVK_113P63121 156 aa8.18□□□□□ -1.1
LINC00339-202ENST00000416769 COX6A2Q02221 97 aa8.18□□□□□ -1.1
LINC00339-202ENST00000416769 FOXI1Q12951 378 aa8.18□□□□□ -1.1
LINC00339-202ENST00000416769 F8VRH5 84 aa8.17□□□□□ -1.1
LINC00339-202ENST00000416769 SYS1-DBNDD2H3BUS1 97 aa8.17□□□□□ -1.1
LINC00339-202ENST00000416769 C3orf79P0CE67 100 aa8.17□□□□□ -1.1
LINC00339-202ENST00000416769 PET117Q6UWS5 81 aa8.17□□□□□ -1.1
LINC00339-202ENST00000416769 GEMIN7Q9H840 131 aaKnown RBP8.17□□□□□ -1.1
LINC00339-202ENST00000416769 IGLV4-69A0A075B6H9 119 aa8.16□□□□□ -1.1
LINC00339-202ENST00000416769 CIRBPQ14011 172 aaKnown RBP8.16□□□□□ -1.1
LINC00339-202ENST00000416769 LINC01561Q8N1V8 128 aa8.16□□□□□ -1.1
LINC00339-202ENST00000416769 IGLV5-45A0A087WSX0 123 aa8.15□□□□□ -1.1
LINC00339-202ENST00000416769 A0A087WYN8 130 aa8.15□□□□□ -1.1
LINC00339-202ENST00000416769 A0A087WZ39 114 aa8.15□□□□□ -1.1
LINC00339-202ENST00000416769 H0Y8G0 127 aa8.15□□□□□ -1.1
LINC00339-202ENST00000416769 COX7A2LO14548 114 aa8.15□□□□□ -1.1
LINC00339-202ENST00000416769 KRTDAPP60985 99 aa8.15□□□□□ -1.1
LINC00339-202ENST00000416769 CFAP161Q6P656 301 aa8.15□□□□□ -1.1
LINC00339-202ENST00000416769 Q6ZRU5 148 aa8.15□□□□□ -1.1
LINC00339-202ENST00000416769 C5orf38Q86SI9 138 aa8.15□□□□□ -1.1
LINC00339-202ENST00000416769 MRPL35Q9NZE8 188 aaKnown RBP8.15□□□□□ -1.1
LINC00339-202ENST00000416769 CDKN2A-AS1Q9UH64 79 aa8.14□□□□□ -1.11
LINC00339-202ENST00000416769 IGHV1-58A0A0C4DH39 117 aa8.13□□□□□ -1.11
LINC00339-202ENST00000416769 hDV102S1A0JD36 115 aa8.13□□□□□ -1.11
LINC00339-202ENST00000416769 C11orf86A6NJI1 115 aa8.13□□□□□ -1.11
LINC00339-202ENST00000416769 APOMO95445 188 aa8.13□□□□□ -1.11
LINC00339-202ENST00000416769 MALP21145 153 aa8.13□□□□□ -1.11
LINC00339-202ENST00000416769 LINC01545Q5VT33 79 aa8.13□□□□□ -1.11
LINC00339-202ENST00000416769 SPACA4Q8TDM5 124 aa8.13□□□□□ -1.11
LINC00339-202ENST00000416769 H3BRM9 83 aa8.12□□□□□ -1.11
LINC00339-202ENST00000416769 DPM2O94777 84 aa8.12□□□□□ -1.11
LINC00339-202ENST00000416769 IGKCP01834 107 aa8.12□□□□□ -1.11
LINC00339-202ENST00000416769 ZNF22P17026 224 aaPredicted RBP8.12□□□□□ -1.11
LINC00339-202ENST00000416769 CNBPP62633 177 aaKnown RBP8.12□□□□□ -1.11
LINC00339-202ENST00000416769 LINC00469Q8N7U9 141 aa8.12□□□□□ -1.11
LINC00339-202ENST00000416769 IGHV3-64A0A075B6Q5 118 aa8.11□□□□□ -1.11
LINC00339-202ENST00000416769 C20orf202A1L168 122 aa8.11□□□□□ -1.11
LINC00339-202ENST00000416769 PLNP26678 52 aa8.11□□□□□ -1.11
LINC00339-202ENST00000416769 AKR1D1P51857 326 aa8.11□□□□□ -1.11
LINC00339-202ENST00000416769 TMEM170BQ5T4T1 132 aa8.11□□□□□ -1.11
LINC00339-202ENST00000416769 OR10D4PQ8NGN7 298 aa8.11□□□□□ -1.11
LINC00339-202ENST00000416769 C15orf56Q8N910 161 aa8.1□□□□□ -1.11
LINC00339-202ENST00000416769 DPH3Q96FX2 82 aa8.1□□□□□ -1.11
LINC00339-202ENST00000416769 PMCHL2Q9BQD1 86 aa8.1□□□□□ -1.11
LINC00339-202ENST00000416769 GVQW2A0A096LPI5 108 aaPredicted RBP8.08□□□□□ -1.12
LINC00339-202ENST00000416769 LOC100996750A0A140TA64 210 aa8.08□□□□□ -1.12
LINC00339-202ENST00000416769 TMEM223A0PJW6 202 aa8.08□□□□□ -1.12
LINC00339-202ENST00000416769 SMIM1B2RUZ4 78 aa8.08□□□□□ -1.12
LINC00339-202ENST00000416769 ZNF561-AS1K7EIQ3 104 aa8.08□□□□□ -1.12
LINC00339-202ENST00000416769 GHRHP01286 108 aa8.08□□□□□ -1.12
LINC00339-202ENST00000416769 HIGD2BQ4VC39 106 aa8.08□□□□□ -1.12
LINC00339-202ENST00000416769 ORAOV1Q8WV07 137 aa8.08□□□□□ -1.12
LINC00339-202ENST00000416769 KRTAP4-6Q9BYQ5 205 aa8.08□□□□□ -1.12
LINC00339-202ENST00000416769 PLAC8Q9NZF1 115 aa8.08□□□□□ -1.12
LINC00339-202ENST00000416769 IGKV2-24A0A0C4DH68 120 aa8.07□□□□□ -1.12
LINC00339-202ENST00000416769 IGLV5-39A0A0G2JS06 123 aa8.07□□□□□ -1.12
LINC00339-202ENST00000416769 F8WDY8 70 aa8.07□□□□□ -1.12
LINC00339-202ENST00000416769 SPINK8P0C7L1 97 aa8.07□□□□□ -1.12
LINC00339-202ENST00000416769 PRR3P79522 188 aaKnown RBP8.07□□□□□ -1.12
LINC00339-202ENST00000416769 KIAA0087Q14695 138 aa8.07□□□□□ -1.12
LINC00339-202ENST00000416769 LPAP08519 4548 aa8.06□□□□□ -1.12
LINC00339-202ENST00000416769 Q8IZM0 81 aa8.06□□□□□ -1.12
LINC00339-202ENST00000416769 C2orf48Q96LS8 159 aa8.06□□□□□ -1.12
LINC00339-202ENST00000416769 LINC01600Q96MT4 127 aa8.06□□□□□ -1.12
LINC00339-202ENST00000416769 SCGB1D1O95968 90 aa8.05□□□□□ -1.12
LINC00339-202ENST00000416769 PRSS2P07478 247 aa8.05□□□□□ -1.12
LINC00339-202ENST00000416769 HERVK_113P61574 105 aa8.05□□□□□ -1.12
LINC00339-202ENST00000416769 SPAG11BQ08648 103 aa8.05□□□□□ -1.12
LINC00339-202ENST00000416769 JOSD1Q15040 202 aaPredicted RBP8.05□□□□□ -1.12
LINC00339-202ENST00000416769 MAJINQ3KP22 176 aa8.05□□□□□ -1.12
LINC00339-202ENST00000416769 C6orf226Q5I0X4 101 aa8.05□□□□□ -1.12
LINC00339-202ENST00000416769 COX7B2Q8TF08 81 aa8.04□□□□□ -1.12
LINC00339-202ENST00000416769 TOMM7Q9P0U1 55 aa8.04□□□□□ -1.12
LINC00339-202ENST00000416769 A0A096LNI7 61 aa8.03□□□□□ -1.12
LINC00339-202ENST00000416769 LEPROTO15243 131 aa8.03□□□□□ -1.12
LINC00339-202ENST00000416769 LINC00526Q96FQ7 95 aa8.03□□□□□ -1.12
LINC00339-202ENST00000416769 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.02□□□□□ -1.13
LINC00339-202ENST00000416769 E9PLD3 99 aa8.02□□□□□ -1.13
LINC00339-202ENST00000416769 CXCL5P42830 114 aa8.02□□□□□ -1.13
LINC00339-202ENST00000416769 KRTAP10-8P60410 259 aa8.02□□□□□ -1.13
LINC00339-202ENST00000416769 SYCNQ0VAF6 134 aa8.02□□□□□ -1.13
LINC00339-202ENST00000416769 ATOH7Q8N100 152 aa8.02□□□□□ -1.13
LINC00339-202ENST00000416769 STPG4Q8N801 248 aa8.02□□□□□ -1.13
LINC00339-202ENST00000416769 C7orf33Q8WU49 177 aa8.02□□□□□ -1.13
LINC00339-202ENST00000416769 PLEKHB2Q96CS7 222 aa8.02□□□□□ -1.13
LINC00339-202ENST00000416769 CAMK2N2Q96S95 79 aa8.02□□□□□ -1.13
LINC00339-202ENST00000416769 NDUFA1O15239 70 aa8.01□□□□□ -1.13
LINC00339-202ENST00000416769 CKS1BP61024 79 aa8.01□□□□□ -1.13
LINC00339-202ENST00000416769 RNF151Q2KHN1 245 aa8.01□□□□□ -1.13
LINC00339-202ENST00000416769 UNQ6190/PRO20217Q6UXQ8 127 aa8□□□□□ -1.13
LINC00339-202ENST00000416769 TRBV30A0A0K0K1B3 111 aa7.99□□□□□ -1.13
LINC00339-202ENST00000416769 J3QQQ9 107 aa7.99□□□□□ -1.13
LINC00339-202ENST00000416769 PYY3Q5JQD4 70 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms