RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 IGLV5-52A0A0A0MRZ9 124 aa9.77□□□□□ -0.85
CCDC88A-204ENST00000413716 PROK1P58294 105 aa9.77□□□□□ -0.85
CCDC88A-204ENST00000413716 PCSK5Q92824 1860 aa9.76□□□□□ -0.85
CCDC88A-204ENST00000413716 Q9UF83 564 aa9.76□□□□□ -0.85
CCDC88A-204ENST00000413716 PRM2P04554 102 aa9.76□□□□□ -0.85
CCDC88A-204ENST00000413716 P0C879 139 aa9.75□□□□□ -0.85
CCDC88A-204ENST00000413716 C2orf48Q96LS8 159 aa9.75□□□□□ -0.85
CCDC88A-204ENST00000413716 TLN1Q9Y490 2541 aaKnown RBP9.75□□□□□ -0.85
CCDC88A-204ENST00000413716 EGFEM1PQ0D2K5 195 aa9.75□□□□□ -0.85
CCDC88A-204ENST00000413716 A0A087WSZ3 146 aa9.74□□□□□ -0.85
CCDC88A-204ENST00000413716 DEFB116Q30KQ4 102 aa9.73□□□□□ -0.85
CCDC88A-204ENST00000413716 LINC01556Q5JQF7 62 aa9.73□□□□□ -0.85
CCDC88A-204ENST00000413716 C4orf26Q17RF5 130 aa9.72□□□□□ -0.85
CCDC88A-204ENST00000413716 U3KQA8 63 aa9.72□□□□□ -0.85
CCDC88A-204ENST00000413716 F8WDY8 70 aa9.72□□□□□ -0.85
CCDC88A-204ENST00000413716 COL27A1Q8IZC6 1860 aaPredicted RBP9.72□□□□□ -0.85
CCDC88A-204ENST00000413716 Q6YL49 198 aa9.71□□□□□ -0.86
CCDC88A-204ENST00000413716 CDC42SE2Q9NRR3 84 aa9.71□□□□□ -0.86
CCDC88A-204ENST00000413716 CRIP1P50238 77 aa9.71□□□□□ -0.86
CCDC88A-204ENST00000413716 SHISA2Q6UWI4 295 aa9.7□□□□□ -0.86
CCDC88A-204ENST00000413716 CRIPTQ9P021 101 aa9.7□□□□□ -0.86
CCDC88A-204ENST00000413716 C9orf116Q5BN46 136 aaPredicted RBP9.7□□□□□ -0.86
CCDC88A-204ENST00000413716 IGLV8-61A0A075B6I0 122 aa9.7□□□□□ -0.86
CCDC88A-204ENST00000413716 LINC00482Q8N8I6 264 aa9.7□□□□□ -0.86
CCDC88A-204ENST00000413716 MRGPRG-AS1Q2M3A8 158 aa9.7□□□□□ -0.86
CCDC88A-204ENST00000413716 SPTBN4Q9H254 2564 aa9.69□□□□□ -0.86
CCDC88A-204ENST00000413716 C11orf1Q9H5F2 150 aa9.69□□□□□ -0.86
CCDC88A-204ENST00000413716 MDFIQ99750 246 aa9.68□□□□□ -0.86
CCDC88A-204ENST00000413716 C6orf223Q8N319 242 aa9.68□□□□□ -0.86
CCDC88A-204ENST00000413716 FSTL3O95633 263 aa9.68□□□□□ -0.86
CCDC88A-204ENST00000413716 UNQ6190/PRO20217Q6UXQ8 127 aa9.67□□□□□ -0.86
CCDC88A-204ENST00000413716 PRR3P79522 188 aaKnown RBP9.67□□□□□ -0.86
CCDC88A-204ENST00000413716 SMIM29Q86T20 159 aa9.67□□□□□ -0.86
CCDC88A-204ENST00000413716 ADORA2A-AS1P86434 159 aa9.67□□□□□ -0.86
CCDC88A-204ENST00000413716 RPS28P62857 69 aaKnown RBP9.66□□□□□ -0.86
CCDC88A-204ENST00000413716 NCOR2Q9Y618 2525 aa9.66□□□□□ -0.86
CCDC88A-204ENST00000413716 IGLV2-11P01706 119 aa9.66□□□□□ -0.86
CCDC88A-204ENST00000413716 PLA2G2CQ5R387 149 aa9.65□□□□□ -0.87
CCDC88A-204ENST00000413716 PIEZO1Q92508 2521 aa9.65□□□□□ -0.87
CCDC88A-204ENST00000413716 KLLNB2CW77 178 aa9.64□□□□□ -0.87
CCDC88A-204ENST00000413716 LINC00574Q9H8X3 128 aa9.64□□□□□ -0.87
CCDC88A-204ENST00000413716 ABCA12Q86UK0 2595 aa9.64□□□□□ -0.87
CCDC88A-204ENST00000413716 TRAV22A0A0B4J277 110 aa9.64□□□□□ -0.87
CCDC88A-204ENST00000413716 PIP4P1Q86T03 277 aa9.63□□□□□ -0.87
CCDC88A-204ENST00000413716 ANKRD11Q6UB99 2663 aaPredicted RBP9.63□□□□□ -0.87
CCDC88A-204ENST00000413716 IGF2RP11717 2491 aa9.63□□□□□ -0.87
CCDC88A-204ENST00000413716 SMIM1B2RUZ4 78 aa9.63□□□□□ -0.87
CCDC88A-204ENST00000413716 POLR2KP53803 58 aaKnown RBP9.62□□□□□ -0.87
CCDC88A-204ENST00000413716 CHCHD7Q9BUK0 85 aa9.62□□□□□ -0.87
CCDC88A-204ENST00000413716 IGFL2Q6UWQ7 119 aa9.62□□□□□ -0.87
CCDC88A-204ENST00000413716 IGIPA6NJ69 53 aa9.62□□□□□ -0.87
CCDC88A-204ENST00000413716 CNFNQ9BYD5 112 aa9.62□□□□□ -0.87
CCDC88A-204ENST00000413716 LINC00846Q9NV44 126 aa9.62□□□□□ -0.87
CCDC88A-204ENST00000413716 H3BPC8 53 aa9.61□□□□□ -0.87
CCDC88A-204ENST00000413716 LINC00242Q5T6M2 205 aa9.61□□□□□ -0.87
CCDC88A-204ENST00000413716 COX6A2Q02221 97 aa9.6□□□□□ -0.87
CCDC88A-204ENST00000413716 Q8N2B8 174 aa9.6□□□□□ -0.87
CCDC88A-204ENST00000413716 INAFM1C9JVW0 142 aa9.58□□□□□ -0.88
CCDC88A-204ENST00000413716 ADAMTSL4-AS1Q5T5F5 129 aa9.58□□□□□ -0.88
CCDC88A-204ENST00000413716 PRRC2CQ9Y520 2896 aaKnown RBP9.57□□□□□ -0.88
CCDC88A-204ENST00000413716 USP9XQ93008 2570 aaPredicted RBP9.57□□□□□ -0.88
CCDC88A-204ENST00000413716 Q6ZSV7 163 aa9.57□□□□□ -0.88
CCDC88A-204ENST00000413716 PRR9Q5T870 116 aa9.56□□□□□ -0.88
CCDC88A-204ENST00000413716 LUZP6Q538Z0 58 aa9.56□□□□□ -0.88
CCDC88A-204ENST00000413716 NAV2Q8IVL1 2488 aa9.56□□□□□ -0.88
CCDC88A-204ENST00000413716 BCE1O60756 84 aa9.55□□□□□ -0.88
CCDC88A-204ENST00000413716 A0A1B0GW54 56 aa9.55□□□□□ -0.88
CCDC88A-204ENST00000413716 PSMG3-AS1Q96PY0 264 aa9.55□□□□□ -0.88
CCDC88A-204ENST00000413716 SPACA4Q8TDM5 124 aa9.54□□□□□ -0.88
CCDC88A-204ENST00000413716 LINC01600Q96MT4 127 aa9.54□□□□□ -0.88
CCDC88A-204ENST00000413716 FBXL19-AS1Q494R0 122 aa9.54□□□□□ -0.88
CCDC88A-204ENST00000413716 JMJD1CQ15652 2540 aa9.54□□□□□ -0.88
CCDC88A-204ENST00000413716 LINC01554Q52M75 96 aa9.54□□□□□ -0.88
CCDC88A-204ENST00000413716 LINC00313P59037 77 aa9.53□□□□□ -0.88
CCDC88A-204ENST00000413716 A8MTW9 85 aa9.53□□□□□ -0.88
CCDC88A-204ENST00000413716 PKD1L2Q7Z442 2459 aa9.53□□□□□ -0.88
CCDC88A-204ENST00000413716 CYP4F30PQ9H0H9 118 aa9.53□□□□□ -0.88
CCDC88A-204ENST00000413716 UQCR11O14957 56 aa9.53□□□□□ -0.88
CCDC88A-204ENST00000413716 LMO4P61968 165 aa9.52□□□□□ -0.88
CCDC88A-204ENST00000413716 APLNQ9ULZ1 77 aa9.52□□□□□ -0.89
CCDC88A-204ENST00000413716 CD164Q04900 197 aa9.52□□□□□ -0.89
CCDC88A-204ENST00000413716 TSPEAR-AS2P59090 65 aa9.52□□□□□ -0.89
CCDC88A-204ENST00000413716 MOBPQ13875 183 aa9.52□□□□□ -0.89
CCDC88A-204ENST00000413716 CR1P17927 2039 aa9.51□□□□□ -0.89
CCDC88A-204ENST00000413716 LINC01561Q8N1V8 128 aa9.51□□□□□ -0.89
CCDC88A-204ENST00000413716 A0A1B0GUV1 79 aa9.5□□□□□ -0.89
CCDC88A-204ENST00000413716 C1orf134Q5TEV5 83 aa9.5□□□□□ -0.89
CCDC88A-204ENST00000413716 GAS8-AS1O95177 125 aa9.5□□□□□ -0.89
CCDC88A-204ENST00000413716 AMELXQ99217 191 aa9.5□□□□□ -0.89
CCDC88A-204ENST00000413716 CDIP1Q9H305 208 aa9.49□□□□□ -0.89
CCDC88A-204ENST00000413716 ERC2-IT1O76042 136 aa9.48□□□□□ -0.89
CCDC88A-204ENST00000413716 ZNF295-AS1Q8N0V1 137 aa9.48□□□□□ -0.89
CCDC88A-204ENST00000413716 KIAA0087Q14695 138 aa9.48□□□□□ -0.89
CCDC88A-204ENST00000413716 FHL2Q14192 279 aa9.48□□□□□ -0.89
CCDC88A-204ENST00000413716 SPATA3Q8NHX4 192 aa9.48□□□□□ -0.89
CCDC88A-204ENST00000413716 C11orf21Q9P2W6 132 aa9.48□□□□□ -0.89
CCDC88A-204ENST00000413716 IGLV4-60A0A075B6I1 120 aa9.46□□□□□ -0.89
CCDC88A-204ENST00000413716 C10orf99Q6UWK7 81 aa9.46□□□□□ -0.9
CCDC88A-204ENST00000413716 KTN1-AS1Q86SY8 53 aa9.46□□□□□ -0.9
CCDC88A-204ENST00000413716 POLQO75417 2590 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms