RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 APOMO95445 188 aa7.52□□□□□ -1.21
LINC00539-201ENST00000411525 TTC32Q5I0X7 151 aa7.52□□□□□ -1.21
LINC00539-201ENST00000411525 TOMM7Q9P0U1 55 aa7.52□□□□□ -1.21
LINC00539-201ENST00000411525 HIGD1BQ9P298 99 aa7.52□□□□□ -1.21
LINC00539-201ENST00000411525 RYR1P21817 5038 aa7.52□□□□□ -1.21
LINC00539-201ENST00000411525 SCGB1D4Q6XE38 83 aa7.51□□□□□ -1.21
LINC00539-201ENST00000411525 ORAOV1Q8WV07 137 aa7.51□□□□□ -1.21
LINC00539-201ENST00000411525 KRTAP1-5Q9BYS1 174 aa7.51□□□□□ -1.21
LINC00539-201ENST00000411525 LINC00587B1AMM8 73 aa7.5□□□□□ -1.21
LINC00539-201ENST00000411525 PRSS2P07478 247 aa7.5□□□□□ -1.21
LINC00539-201ENST00000411525 Q8IZM0 81 aa7.5□□□□□ -1.21
LINC00539-201ENST00000411525 ZNF625Q96I27 306 aaPredicted RBP7.5□□□□□ -1.21
LINC00539-201ENST00000411525 A0A0J9YXY3 114 aa7.49□□□□□ -1.21
LINC00539-201ENST00000411525 NBDYA0A0U1RRE5 68 aa7.49□□□□□ -1.21
LINC00539-201ENST00000411525 SPAG11BQ08648 103 aa7.49□□□□□ -1.21
LINC00539-201ENST00000411525 SFTA2Q6UW10 78 aa7.49□□□□□ -1.21
LINC00539-201ENST00000411525 Q6ZR54 194 aa7.49□□□□□ -1.21
LINC00539-201ENST00000411525 CXCL5P42830 114 aa7.48□□□□□ -1.21
LINC00539-201ENST00000411525 HERV-K104P63124 156 aa7.48□□□□□ -1.21
LINC00539-201ENST00000411525 C6orf226Q5I0X4 101 aa7.48□□□□□ -1.21
LINC00539-201ENST00000411525 C1orf134Q5TEV5 83 aa7.48□□□□□ -1.21
LINC00539-201ENST00000411525 COX11Q9Y6N1 276 aa7.48□□□□□ -1.21
LINC00539-201ENST00000411525 FAT2Q9NYQ8 4349 aa7.47□□□□□ -1.21
LINC00539-201ENST00000411525 HSD52Q0P140 79 aa7.47□□□□□ -1.21
LINC00539-201ENST00000411525 KIAA0087Q14695 138 aa7.47□□□□□ -1.21
LINC00539-201ENST00000411525 TM2D2Q9BX73 214 aa7.47□□□□□ -1.21
LINC00539-201ENST00000411525 DNAH17Q9UFH2 4485 aa7.46□□□□□ -1.21
LINC00539-201ENST00000411525 TMEM238C9JI98 176 aa7.46□□□□□ -1.22
LINC00539-201ENST00000411525 CKS1BP61024 79 aa7.46□□□□□ -1.22
LINC00539-201ENST00000411525 C15orf56Q8N910 161 aa7.46□□□□□ -1.22
LINC00539-201ENST00000411525 SPANXB1Q9NS25 103 aaPredicted RBP7.46□□□□□ -1.22
LINC00539-201ENST00000411525 DNAH2Q9P225 4427 aa7.45□□□□□ -1.22
LINC00539-201ENST00000411525 M0R143 59 aa7.45□□□□□ -1.22
LINC00539-201ENST00000411525 TIMM17BO60830 172 aa7.45□□□□□ -1.22
LINC00539-201ENST00000411525 TAL2Q16559 108 aa7.45□□□□□ -1.22
LINC00539-201ENST00000411525 MEIG1Q5JSS6 88 aa7.45□□□□□ -1.22
LINC00539-201ENST00000411525 HIST1H4GQ99525 98 aa7.45□□□□□ -1.22
LINC00539-201ENST00000411525 PKD1P98161 4303 aa7.45□□□□□ -1.22
LINC00539-201ENST00000411525 GVQW2A0A096LPI5 108 aaPredicted RBP7.44□□□□□ -1.22
LINC00539-201ENST00000411525 ZNF561-AS1K7EIQ3 104 aa7.44□□□□□ -1.22
LINC00539-201ENST00000411525 CIRBPQ14011 172 aaKnown RBP7.44□□□□□ -1.22
LINC00539-201ENST00000411525 HIGD2BQ4VC39 106 aa7.44□□□□□ -1.22
LINC00539-201ENST00000411525 C2orf82Q6UX34 121 aa7.44□□□□□ -1.22
LINC00539-201ENST00000411525 LITAFQ99732 161 aa7.44□□□□□ -1.22
LINC00539-201ENST00000411525 HINT1P49773 126 aaPredicted RBP7.43□□□□□ -1.22
LINC00539-201ENST00000411525 SRSF9Q13242 221 aaKnown RBP eCLIP7.43□□□□□ -1.22
LINC00539-201ENST00000411525 BVES-AS1Q5T3Y7 98 aa7.43□□□□□ -1.22
LINC00539-201ENST00000411525 C6orf223Q8N319 242 aa7.43□□□□□ -1.22
LINC00539-201ENST00000411525 NTN5Q8WTR8 489 aaPredicted RBP7.43□□□□□ -1.22
LINC00539-201ENST00000411525 LINC00526Q96FQ7 95 aa7.43□□□□□ -1.22
LINC00539-201ENST00000411525 SPANXDQ9BXN6 97 aa7.43□□□□□ -1.22
LINC00539-201ENST00000411525 SPANXCQ9NY87 97 aa7.43□□□□□ -1.22
LINC00539-201ENST00000411525 USP17L23D6RBM5 183 aa7.42□□□□□ -1.22
LINC00539-201ENST00000411525 EREGO14944 169 aa7.42□□□□□ -1.22
LINC00539-201ENST00000411525 PSCAO43653 123 aa7.42□□□□□ -1.22
LINC00539-201ENST00000411525 SMIM13P0DJ93 91 aa7.42□□□□□ -1.22
LINC00539-201ENST00000411525 GCSHP23434 173 aa7.42□□□□□ -1.22
LINC00539-201ENST00000411525 BATFQ16520 125 aa7.42□□□□□ -1.22
LINC00539-201ENST00000411525 CEND1Q8N111 149 aa7.42□□□□□ -1.22
LINC00539-201ENST00000411525 SNHG12Q9BXW3 62 aa7.42□□□□□ -1.22
LINC00539-201ENST00000411525 ERG28Q9UKR5 140 aa7.42□□□□□ -1.22
LINC00539-201ENST00000411525 C16orf90A8MZG2 172 aa7.41□□□□□ -1.22
LINC00539-201ENST00000411525 F8WDY8 70 aa7.41□□□□□ -1.22
LINC00539-201ENST00000411525 CDK2AP2O75956 126 aa7.41□□□□□ -1.22
LINC00539-201ENST00000411525 ADAMTSL4-AS1Q5T5F5 129 aa7.41□□□□□ -1.22
LINC00539-201ENST00000411525 Q6ZVH6 145 aa7.41□□□□□ -1.22
LINC00539-201ENST00000411525 C2orf48Q96LS8 159 aa7.41□□□□□ -1.22
LINC00539-201ENST00000411525 CAMK2N2Q96S95 79 aa7.41□□□□□ -1.22
LINC00539-201ENST00000411525 A0A0U1RRA0 63 aa7.4□□□□□ -1.22
LINC00539-201ENST00000411525 FXYD2P54710 66 aa7.4□□□□□ -1.22
LINC00539-201ENST00000411525 C10orf25Q5T742 122 aa7.4□□□□□ -1.22
LINC00539-201ENST00000411525 UNQ6190/PRO20217Q6UXQ8 127 aa7.4□□□□□ -1.22
LINC00539-201ENST00000411525 Q6ZRN7 208 aaPredicted RBP7.4□□□□□ -1.22
LINC00539-201ENST00000411525 LECT2O14960 151 aa7.39□□□□□ -1.23
LINC00539-201ENST00000411525 LINC00158P58513 81 aa7.39□□□□□ -1.23
LINC00539-201ENST00000411525 DAND5Q8N907 189 aa7.39□□□□□ -1.23
LINC00539-201ENST00000411525 C6orf48Q9UBA6 75 aa7.39□□□□□ -1.23
LINC00539-201ENST00000411525 TRBV30A0A0K0K1B3 111 aa7.38□□□□□ -1.23
LINC00539-201ENST00000411525 IFITM1P13164 125 aa7.38□□□□□ -1.23
LINC00539-201ENST00000411525 PFN2P35080 140 aa7.38□□□□□ -1.23
LINC00539-201ENST00000411525 PTTG1IPP53801 180 aa7.38□□□□□ -1.23
LINC00539-201ENST00000411525 TNP2Q05952 138 aa7.38□□□□□ -1.23
LINC00539-201ENST00000411525 COX17Q14061 63 aa7.38□□□□□ -1.23
LINC00539-201ENST00000411525 WFDC2Q14508 124 aa7.38□□□□□ -1.23
LINC00539-201ENST00000411525 Q6ZRU5 148 aa7.38□□□□□ -1.23
LINC00539-201ENST00000411525 MIR7-3HGQ8N6C7 128 aa7.38□□□□□ -1.23
LINC00539-201ENST00000411525 KRTAP3-3Q9BYR6 98 aa7.38□□□□□ -1.23
LINC00539-201ENST00000411525 KRTAP3-2Q9BYR7 98 aa7.38□□□□□ -1.23
LINC00539-201ENST00000411525 NPC2P61916 151 aa7.37□□□□□ -1.23
LINC00539-201ENST00000411525 RPL24P83731 157 aaKnown RBP7.37□□□□□ -1.23
LINC00539-201ENST00000411525 SYCNQ0VAF6 134 aa7.37□□□□□ -1.23
LINC00539-201ENST00000411525 C14orf177Q52M58 125 aa7.37□□□□□ -1.23
LINC00539-201ENST00000411525 C9orf116Q5BN46 136 aaPredicted RBP7.37□□□□□ -1.23
LINC00539-201ENST00000411525 MUSTN1Q8IVN3 82 aa7.37□□□□□ -1.23
LINC00539-201ENST00000411525 COPS9Q8WXC6 57 aa7.37□□□□□ -1.23
LINC00539-201ENST00000411525 CARD19Q96LW7 228 aa7.37□□□□□ -1.23
LINC00539-201ENST00000411525 KRTAP4-5Q9BYR2 181 aa7.37□□□□□ -1.23
LINC00539-201ENST00000411525 ABCA13Q86UQ4 5058 aa7.37□□□□□ -1.23
LINC00539-201ENST00000411525 DNAH11Q96DT5 4516 aa7.37□□□□□ -1.23
LINC00539-201ENST00000411525 A6NDN8 102 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms