RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 PPDPFQ9H3Y8 114 aa4.21□□□□□ -1.74
USP40-202ENST00000409945 TRBV7-3A0A075B6L6 115 aa4.2□□□□□ -1.74
USP40-202ENST00000409945 A0A087WX48 190 aa4.2□□□□□ -1.74
USP40-202ENST00000409945 MUC21A0A0G2JKD1 596 aa4.2□□□□□ -1.74
USP40-202ENST00000409945 MUC21A0A140T8X8 626 aa4.2□□□□□ -1.74
USP40-202ENST00000409945 LINC01546A6NGU7 62 aa4.2□□□□□ -1.74
USP40-202ENST00000409945 LINC01556Q5JQF7 62 aa4.2□□□□□ -1.74
USP40-202ENST00000409945 LINC01545Q5VT33 79 aa4.2□□□□□ -1.74
USP40-202ENST00000409945 WFDC10BQ8IUB3 73 aa4.2□□□□□ -1.74
USP40-202ENST00000409945 RMI2Q96E14 147 aa4.2□□□□□ -1.74
USP40-202ENST00000409945 MRAP2Q96G30 205 aa4.2□□□□□ -1.74
USP40-202ENST00000409945 RNF185Q96GF1 192 aa4.2□□□□□ -1.74
USP40-202ENST00000409945 ST20Q9HBF5 79 aa4.2□□□□□ -1.74
USP40-202ENST00000409945 BIRC6Q9NR09 4857 aa4.2□□□□□ -1.74
USP40-202ENST00000409945 FRAS1Q86XX4 4008 aa4.19□□□□□ -1.74
USP40-202ENST00000409945 LOC389332A0A1B0GUA5 103 aa4.19□□□□□ -1.74
USP40-202ENST00000409945 E9PLD3 99 aa4.19□□□□□ -1.74
USP40-202ENST00000409945 NPYP01303 97 aa4.19□□□□□ -1.74
USP40-202ENST00000409945 MGPP08493 103 aa4.19□□□□□ -1.74
USP40-202ENST00000409945 C14orf178Q8N769 122 aaPredicted RBP4.19□□□□□ -1.74
USP40-202ENST00000409945 SNHG12Q9BXW3 62 aa4.19□□□□□ -1.74
USP40-202ENST00000409945 TRAV8-3A0A0A6YYJ7 113 aa4.19□□□□□ -1.74
USP40-202ENST00000409945 FAM168BA1KXE4 195 aa4.19□□□□□ -1.74
USP40-202ENST00000409945 C16orf90A8MZG2 172 aa4.19□□□□□ -1.74
USP40-202ENST00000409945 NCR2O95944 276 aa4.19□□□□□ -1.74
USP40-202ENST00000409945 PPP1R17O96001 155 aa4.19□□□□□ -1.74
USP40-202ENST00000409945 ZNF25P17030 456 aaPredicted RBP4.19□□□□□ -1.74
USP40-202ENST00000409945 HNRNPA3P51991 378 aaKnown RBP4.19□□□□□ -1.74
USP40-202ENST00000409945 Q6ZN92 141 aa4.19□□□□□ -1.74
USP40-202ENST00000409945 LINC00173Q6ZV60 143 aa4.19□□□□□ -1.74
USP40-202ENST00000409945 FAM19A5Q7Z5A7 132 aaPredicted RBP4.19□□□□□ -1.74
USP40-202ENST00000409945 DAZ4Q86SG3 579 aaKnown RBP4.19□□□□□ -1.74
USP40-202ENST00000409945 ATOH7Q8N100 152 aa4.19□□□□□ -1.74
USP40-202ENST00000409945 DNAJC30Q96LL9 226 aa4.19□□□□□ -1.74
USP40-202ENST00000409945 CHCHD7Q9BUK0 85 aa4.19□□□□□ -1.74
USP40-202ENST00000409945 DAZ3Q9NR90 486 aaKnown RBP4.19□□□□□ -1.74
USP40-202ENST00000409945 HECTD4Q9Y4D8 3996 aa4.19□□□□□ -1.74
USP40-202ENST00000409945 A0A096LNJ9 63 aa4.18□□□□□ -1.74
USP40-202ENST00000409945 TMEM262E9PQX1 116 aa4.18□□□□□ -1.74
USP40-202ENST00000409945 SMKR1H3BMG3 65 aa4.18□□□□□ -1.74
USP40-202ENST00000409945 IGHV3-30P01768 117 aa4.18□□□□□ -1.74
USP40-202ENST00000409945 IGHV3-33P01772 117 aa4.18□□□□□ -1.74
USP40-202ENST00000409945 IGHV3-30-3P0DP02 117 aa4.18□□□□□ -1.74
USP40-202ENST00000409945 IGHV3-30-5P0DP03 117 aa4.18□□□□□ -1.74
USP40-202ENST00000409945 CKS1BP61024 79 aa4.18□□□□□ -1.74
USP40-202ENST00000409945 Q8N8P6 123 aa4.18□□□□□ -1.74
USP40-202ENST00000409945 IFI27L1Q96BM0 104 aa4.18□□□□□ -1.74
USP40-202ENST00000409945 DPH3P1Q9H4G8 78 aa4.18□□□□□ -1.74
USP40-202ENST00000409945 DNAH2Q9P225 4427 aa4.18□□□□□ -1.74
USP40-202ENST00000409945 A0A1B0GVY2 172 aa4.17□□□□□ -1.74
USP40-202ENST00000409945 IBA57-AS1B1ANH7 110 aa4.17□□□□□ -1.74
USP40-202ENST00000409945 K7EMI3 77 aa4.17□□□□□ -1.74
USP40-202ENST00000409945 CRPP02741 224 aa4.17□□□□□ -1.74
USP40-202ENST00000409945 FCER1GP30273 86 aa4.17□□□□□ -1.74
USP40-202ENST00000409945 TRBV25-1A0A075B6N4 114 aa4.17□□□□□ -1.74
USP40-202ENST00000409945 UBE2D3P61077 147 aa4.17□□□□□ -1.74
USP40-202ENST00000409945 UBE2D2P62837 147 aa4.17□□□□□ -1.74
USP40-202ENST00000409945 C1orf195Q5TG92 126 aa4.17□□□□□ -1.74
USP40-202ENST00000409945 CEND1Q8N111 149 aa4.17□□□□□ -1.74
USP40-202ENST00000409945 C20orf78Q9BR46 151 aa4.17□□□□□ -1.74
USP40-202ENST00000409945 PRO0628Q9UI54 55 aa4.17□□□□□ -1.74
USP40-202ENST00000409945 DNAH17Q9UFH2 4485 aa4.16□□□□□ -1.74
USP40-202ENST00000409945 TRBV6-8A0A0A6YYG3 113 aa4.16□□□□□ -1.74
USP40-202ENST00000409945 UBE2L6O14933 153 aa4.16□□□□□ -1.74
USP40-202ENST00000409945 LINC00694P0DN24 101 aa4.16□□□□□ -1.74
USP40-202ENST00000409945 COL5A1-AS1Q5SY13 56 aa4.16□□□□□ -1.74
USP40-202ENST00000409945 SLC25A34Q6PIV7 304 aa4.16□□□□□ -1.74
USP40-202ENST00000409945 C2orf66Q6UXQ4 117 aa4.16□□□□□ -1.74
USP40-202ENST00000409945 PMCHL2Q9BQD1 86 aa4.16□□□□□ -1.74
USP40-202ENST00000409945 LINC01549A6NIU2 74 aa4.15□□□□□ -1.74
USP40-202ENST00000409945 ORMDL2Q53FV1 153 aa4.15□□□□□ -1.74
USP40-202ENST00000409945 SMIM2Q9BVW6 85 aa4.15□□□□□ -1.74
USP40-202ENST00000409945 SMAGPQ0VAQ4 97 aa4.15□□□□□ -1.75
USP40-202ENST00000409945 FAT2Q9NYQ8 4349 aa4.15□□□□□ -1.75
USP40-202ENST00000409945 IGKV2D-24A0A075B6R9 120 aa4.14□□□□□ -1.75
USP40-202ENST00000409945 A0A087WTM6 91 aa4.14□□□□□ -1.75
USP40-202ENST00000409945 TRAV26-2A0A0B4J265 109 aa4.14□□□□□ -1.75
USP40-202ENST00000409945 M0QY20 66 aa4.14□□□□□ -1.75
USP40-202ENST00000409945 ANGP03950 147 aaKnown RBP4.14□□□□□ -1.75
USP40-202ENST00000409945 COX8AP10176 69 aa4.14□□□□□ -1.75
USP40-202ENST00000409945 BATFQ16520 125 aa4.14□□□□□ -1.75
USP40-202ENST00000409945 C9orf129Q5T035 196 aaKnown RBP4.14□□□□□ -1.75
USP40-202ENST00000409945 Q6ZVH6 145 aa4.14□□□□□ -1.75
USP40-202ENST00000409945 UBE2WQ96B02 151 aa4.14□□□□□ -1.75
USP40-202ENST00000409945 KLK12Q9UKR0 248 aa4.14□□□□□ -1.75
USP40-202ENST00000409945 IGLV8-61A0A075B6I0 122 aa4.13□□□□□ -1.75
USP40-202ENST00000409945 Q6ZRN7 208 aaPredicted RBP4.13□□□□□ -1.75
USP40-202ENST00000409945 OR13C6PQ8NH95 151 aa4.13□□□□□ -1.75
USP40-202ENST00000409945 TMEM243Q9BU79 118 aa4.13□□□□□ -1.75
USP40-202ENST00000409945 KIF25-AS1Q9Y6Z4 181 aa4.13□□□□□ -1.75
USP40-202ENST00000409945 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.13□□□□□ -1.75
USP40-202ENST00000409945 MIAQ16674 131 aa4.13□□□□□ -1.75
USP40-202ENST00000409945 PKHD1P08F94 4074 aa4.12□□□□□ -1.75
USP40-202ENST00000409945 PKD1P98161 4303 aa4.12□□□□□ -1.75
USP40-202ENST00000409945 TRAV12-1A0A0B4J245 112 aa4.12□□□□□ -1.75
USP40-202ENST00000409945 FAM240AA0A1B0GVK7 77 aa4.12□□□□□ -1.75
USP40-202ENST00000409945 DPM2O94777 84 aa4.12□□□□□ -1.75
USP40-202ENST00000409945 IGKCP01834 107 aa4.12□□□□□ -1.75
USP40-202ENST00000409945 PLNP26678 52 aa4.12□□□□□ -1.75
USP40-202ENST00000409945 PRR4Q16378 134 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms