RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 CDKN2A-AS1Q9UH64 79 aa17.83■□□□□ 0.44
HMGB1-205ENST00000399494 TINCRA0A1B0GVN0 87 aa17.82■□□□□ 0.44
HMGB1-205ENST00000399494 COLCA2A8K830 154 aa17.82■□□□□ 0.44
HMGB1-205ENST00000399494 PRSS2P07478 247 aa17.82■□□□□ 0.44
HMGB1-205ENST00000399494 ATP5LO75964 103 aa17.81■□□□□ 0.44
HMGB1-205ENST00000399494 STPG4Q8N801 248 aa17.81■□□□□ 0.44
HMGB1-205ENST00000399494 MRPL35Q9NZE8 188 aaKnown RBP17.81■□□□□ 0.44
HMGB1-205ENST00000399494 TOMM7Q9P0U1 55 aa17.81■□□□□ 0.44
HMGB1-205ENST00000399494 PRR3P79522 188 aaKnown RBP17.8■□□□□ 0.44
HMGB1-205ENST00000399494 RNF151Q2KHN1 245 aa17.8■□□□□ 0.44
HMGB1-205ENST00000399494 PDZD11Q5EBL8 140 aa17.8■□□□□ 0.44
HMGB1-205ENST00000399494 RPL18AQ02543 176 aaKnown RBP17.79■□□□□ 0.44
HMGB1-205ENST00000399494 GAGE2BQ13066 116 aa17.79■□□□□ 0.44
HMGB1-205ENST00000399494 KIAA0087Q14695 138 aa17.79■□□□□ 0.44
HMGB1-205ENST00000399494 SCO1O75880 301 aa17.78■□□□□ 0.44
HMGB1-205ENST00000399494 UNQ6190/PRO20217Q6UXQ8 127 aa17.78■□□□□ 0.44
HMGB1-205ENST00000399494 HSBP1O75506 76 aa17.77■□□□□ 0.44
HMGB1-205ENST00000399494 PTTG1IPP53801 180 aa17.77■□□□□ 0.44
HMGB1-205ENST00000399494 ODF1Q14990 250 aa17.76■□□□□ 0.43
HMGB1-205ENST00000399494 C10orf25Q5T742 122 aa17.76■□□□□ 0.43
HMGB1-205ENST00000399494 CKS1BP61024 79 aa17.75■□□□□ 0.43
HMGB1-205ENST00000399494 C6orf226Q5I0X4 101 aa17.75■□□□□ 0.43
HMGB1-205ENST00000399494 C2orf82Q6UX34 121 aa17.75■□□□□ 0.43
HMGB1-205ENST00000399494 Q8IZM0 81 aa17.75■□□□□ 0.43
HMGB1-205ENST00000399494 C6orf48Q9UBA6 75 aa17.74■□□□□ 0.43
HMGB1-205ENST00000399494 IGLV5-45A0A087WSX0 123 aa17.73■□□□□ 0.43
HMGB1-205ENST00000399494 RNF213Q63HN8 5207 aa17.73■□□□□ 0.43
HMGB1-205ENST00000399494 TRBV30A0A0K0K1B3 111 aa17.72■□□□□ 0.43
HMGB1-205ENST00000399494 SMIM1B2RUZ4 78 aa17.71■□□□□ 0.43
HMGB1-205ENST00000399494 H3BRM9 83 aa17.71■□□□□ 0.43
HMGB1-205ENST00000399494 IGLC3P0DOY3 106 aa17.71■□□□□ 0.43
HMGB1-205ENST00000399494 KRTAP10-8P60410 259 aa17.71■□□□□ 0.43
HMGB1-205ENST00000399494 FAM19A2Q8N3H0 131 aa17.7■□□□□ 0.42
HMGB1-205ENST00000399494 SERF1AO75920 110 aa17.69■□□□□ 0.42
HMGB1-205ENST00000399494 SPINK8P0C7L1 97 aa17.69■□□□□ 0.42
HMGB1-205ENST00000399494 SPINK6Q6UWN8 80 aa17.69■□□□□ 0.42
HMGB1-205ENST00000399494 IFI27L1Q96BM0 104 aa17.69■□□□□ 0.42
HMGB1-205ENST00000399494 SRSF9Q13242 221 aaKnown RBP eCLIP17.67■□□□□ 0.42
HMGB1-205ENST00000399494 COX7B2Q8TF08 81 aa17.67■□□□□ 0.42
HMGB1-205ENST00000399494 TLX1NBP0CAT3 122 aa17.66■□□□□ 0.42
HMGB1-205ENST00000399494 CXCL5P42830 114 aa17.66■□□□□ 0.42
HMGB1-205ENST00000399494 CHTOPQ9Y3Y2 248 aaKnown RBP17.65■□□□□ 0.42
HMGB1-205ENST00000399494 GAGE2EQ4V326 116 aa17.64■□□□□ 0.41
HMGB1-205ENST00000399494 REG3GQ6UW15 175 aa17.64■□□□□ 0.41
HMGB1-205ENST00000399494 Q6ZRP5 223 aa17.64■□□□□ 0.41
HMGB1-205ENST00000399494 GAGE2DQ9UEU5 116 aa17.64■□□□□ 0.41
HMGB1-205ENST00000399494 F8VRH5 84 aa17.63■□□□□ 0.41
HMGB1-205ENST00000399494 ZNF22P17026 224 aaPredicted RBP17.63■□□□□ 0.41
HMGB1-205ENST00000399494 C9orf116Q5BN46 136 aaPredicted RBP17.63■□□□□ 0.41
HMGB1-205ENST00000399494 LINC00310P59036 64 aa17.62■□□□□ 0.41
HMGB1-205ENST00000399494 C11orf86A6NJI1 115 aa17.61■□□□□ 0.41
HMGB1-205ENST00000399494 NDUFC2-KCTD14E9PQ53 114 aa17.61■□□□□ 0.41
HMGB1-205ENST00000399494 LEPROTL1O95214 131 aa17.61■□□□□ 0.41
HMGB1-205ENST00000399494 TMEM170BQ5T4T1 132 aa17.61■□□□□ 0.41
HMGB1-205ENST00000399494 TRAV12-1A0A0B4J245 112 aa17.6■□□□□ 0.41
HMGB1-205ENST00000399494 A0A1W2PNN7 141 aa17.58■□□□□ 0.4
HMGB1-205ENST00000399494 H0Y8G0 127 aa17.57■□□□□ 0.4
HMGB1-205ENST00000399494 NUPR1O60356 82 aa17.57■□□□□ 0.4
HMGB1-205ENST00000399494 HSPB8Q9UJY1 196 aa17.56■□□□□ 0.4
HMGB1-205ENST00000399494 HIST1H2BKO60814 126 aa17.55■□□□□ 0.4
HMGB1-205ENST00000399494 HIST1H2BJP06899 126 aa17.55■□□□□ 0.4
HMGB1-205ENST00000399494 HIST1H2BOP23527 126 aa17.55■□□□□ 0.4
HMGB1-205ENST00000399494 HIST1H2BBP33778 126 aa17.55■□□□□ 0.4
HMGB1-205ENST00000399494 HIST1H2BDP58876 126 aa17.55■□□□□ 0.4
HMGB1-205ENST00000399494 HIST1H2BCP62807 126 aa17.55■□□□□ 0.4
HMGB1-205ENST00000399494 HIST2H2BEQ16778 126 aa17.55■□□□□ 0.4
HMGB1-205ENST00000399494 HIST2H2BFQ5QNW6 126 aaPredicted RBP17.55■□□□□ 0.4
HMGB1-205ENST00000399494 HIST1H2BHQ93079 126 aa17.55■□□□□ 0.4
HMGB1-205ENST00000399494 HIST1H2BNQ99877 126 aa17.55■□□□□ 0.4
HMGB1-205ENST00000399494 HIST1H2BMQ99879 126 aa17.55■□□□□ 0.4
HMGB1-205ENST00000399494 IGLV5-39A0A0G2JS06 123 aa17.54■□□□□ 0.4
HMGB1-205ENST00000399494 FABP4P15090 132 aa17.54■□□□□ 0.4
HMGB1-205ENST00000399494 S100A1P23297 94 aa17.52■□□□□ 0.4
HMGB1-205ENST00000399494 FAM19A5Q7Z5A7 132 aaPredicted RBP17.52■□□□□ 0.4
HMGB1-205ENST00000399494 FAM168BA1KXE4 195 aa17.51■□□□□ 0.39
HMGB1-205ENST00000399494 C9orf129Q5T035 196 aaKnown RBP17.48■□□□□ 0.39
HMGB1-205ENST00000399494 PHF5AQ7RTV0 110 aaKnown RBP17.48■□□□□ 0.39
HMGB1-205ENST00000399494 ATP6V1G1O75348 118 aa17.46■□□□□ 0.39
HMGB1-205ENST00000399494 XAGE1AQ9HD64 81 aa17.46■□□□□ 0.39
HMGB1-205ENST00000399494 TMEM223A0PJW6 202 aa17.45■□□□□ 0.38
HMGB1-205ENST00000399494 MAP1LC3CQ9BXW4 147 aa17.44■□□□□ 0.38
HMGB1-205ENST00000399494 M0QXV9 152 aa17.43■□□□□ 0.38
HMGB1-205ENST00000399494 PSORS1C2Q9UIG4 136 aa17.43■□□□□ 0.38
HMGB1-205ENST00000399494 SFTA2Q6UW10 78 aa17.42■□□□□ 0.38
HMGB1-205ENST00000399494 PLNP26678 52 aa17.41■□□□□ 0.38
HMGB1-205ENST00000399494 PFN2P35080 140 aa17.4■□□□□ 0.38
HMGB1-205ENST00000399494 ZNF625Q96I27 306 aaPredicted RBP17.39■□□□□ 0.37
HMGB1-205ENST00000399494 DPM2O94777 84 aa17.38■□□□□ 0.37
HMGB1-205ENST00000399494 KRTAP7-1Q8IUC3 87 aa17.38■□□□□ 0.37
HMGB1-205ENST00000399494 ERG28Q9UKR5 140 aa17.38■□□□□ 0.37
HMGB1-205ENST00000399494 UBE2BP63146 152 aa17.37■□□□□ 0.37
HMGB1-205ENST00000399494 PMCHL2Q9BQD1 86 aa17.37■□□□□ 0.37
HMGB1-205ENST00000399494 IGKCP01834 107 aa17.34■□□□□ 0.37
HMGB1-205ENST00000399494 COX17Q14061 63 aa17.34■□□□□ 0.37
HMGB1-205ENST00000399494 C1orf137Q5JT78 98 aa17.34■□□□□ 0.37
HMGB1-205ENST00000399494 LPAP08519 4548 aa17.32■□□□□ 0.36
HMGB1-205ENST00000399494 HERVK_113P61574 105 aa17.32■□□□□ 0.36
HMGB1-205ENST00000399494 COA6Q5JTJ3 125 aaKnown RBP17.32■□□□□ 0.36
HMGB1-205ENST00000399494 C22orf24Q9Y442 160 aa17.31■□□□□ 0.36
HMGB1-205ENST00000399494 SYS1-DBNDD2H3BUS1 97 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms