RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 A0A096LNJ9 63 aa14.78□□□□□ -0.04
SHMT1-204ENST00000395682 RAB5BP61020 215 aa14.78□□□□□ -0.04
SHMT1-204ENST00000395682 CKS1BP61024 79 aa14.78□□□□□ -0.04
SHMT1-204ENST00000395682 Q6ZRP5 223 aa14.78□□□□□ -0.04
SHMT1-204ENST00000395682 PKHD1L1Q86WI1 4243 aa14.77□□□□□ -0.04
SHMT1-204ENST00000395682 CBLN2Q8IUK8 224 aa14.77□□□□□ -0.05
SHMT1-204ENST00000395682 Q8IZM0 81 aa14.77□□□□□ -0.05
SHMT1-204ENST00000395682 OXTP01178 125 aa14.76□□□□□ -0.05
SHMT1-204ENST00000395682 PRR3P79522 188 aaKnown RBP14.76□□□□□ -0.05
SHMT1-204ENST00000395682 PMCHL1Q16048 86 aa14.76□□□□□ -0.05
SHMT1-204ENST00000395682 GAGE2EQ4V326 116 aa14.76□□□□□ -0.05
SHMT1-204ENST00000395682 GAGE2DQ9UEU5 116 aa14.76□□□□□ -0.05
SHMT1-204ENST00000395682 LRP1Q07954 4544 aaKnown RBP14.75□□□□□ -0.05
SHMT1-204ENST00000395682 HBDP02042 147 aa14.75□□□□□ -0.05
SHMT1-204ENST00000395682 NDUFA6P56556 154 aa14.74□□□□□ -0.05
SHMT1-204ENST00000395682 IGLV5-45A0A087WSX0 123 aa14.73□□□□□ -0.05
SHMT1-204ENST00000395682 SMIM1B2RUZ4 78 aa14.72□□□□□ -0.05
SHMT1-204ENST00000395682 PDZD11Q5EBL8 140 aa14.72□□□□□ -0.05
SHMT1-204ENST00000395682 FAM168BA1KXE4 195 aa14.71□□□□□ -0.05
SHMT1-204ENST00000395682 NDUFC2-KCTD14E9PQ53 114 aa14.71□□□□□ -0.05
SHMT1-204ENST00000395682 PHF5AQ7RTV0 110 aaKnown RBP14.7□□□□□ -0.06
SHMT1-204ENST00000395682 FAT3Q8TDW7 4589 aa14.69□□□□□ -0.06
SHMT1-204ENST00000395682 F8VRH5 84 aa14.68□□□□□ -0.06
SHMT1-204ENST00000395682 ATP5LO75964 103 aa14.68□□□□□ -0.06
SHMT1-204ENST00000395682 SPINK8P0C7L1 97 aa14.68□□□□□ -0.06
SHMT1-204ENST00000395682 IGLC3P0DOY3 106 aa14.68□□□□□ -0.06
SHMT1-204ENST00000395682 COX7B2Q8TF08 81 aa14.68□□□□□ -0.06
SHMT1-204ENST00000395682 H3BRM9 83 aa14.67□□□□□ -0.06
SHMT1-204ENST00000395682 FAM19A5Q7Z5A7 132 aaPredicted RBP14.67□□□□□ -0.06
SHMT1-204ENST00000395682 CHCHD1Q96BP2 118 aaKnown RBP14.67□□□□□ -0.06
SHMT1-204ENST00000395682 CXCL5P42830 114 aa14.66□□□□□ -0.06
SHMT1-204ENST00000395682 C9orf129Q5T035 196 aaKnown RBP14.65□□□□□ -0.06
SHMT1-204ENST00000395682 TRGC2P03986 189 aa14.64□□□□□ -0.07
SHMT1-204ENST00000395682 BAGE3Q86Y29 109 aa14.64□□□□□ -0.07
SHMT1-204ENST00000395682 KRTAP7-1Q8IUC3 87 aa14.63□□□□□ -0.07
SHMT1-204ENST00000395682 PSORS1C2Q9UIG4 136 aa14.63□□□□□ -0.07
SHMT1-204ENST00000395682 ZNF22P17026 224 aaPredicted RBP14.61□□□□□ -0.07
SHMT1-204ENST00000395682 SPINK6Q6UWN8 80 aa14.61□□□□□ -0.07
SHMT1-204ENST00000395682 SRSF9Q13242 221 aaKnown RBP eCLIP14.6□□□□□ -0.07
SHMT1-204ENST00000395682 XAGE1AQ9HD64 81 aa14.59□□□□□ -0.07
SHMT1-204ENST00000395682 IGLV5-39A0A0G2JS06 123 aa14.58□□□□□ -0.08
SHMT1-204ENST00000395682 COLCA2A8K830 154 aa14.58□□□□□ -0.08
SHMT1-204ENST00000395682 M0QXV9 152 aa14.58□□□□□ -0.08
SHMT1-204ENST00000395682 C1orf137Q5JT78 98 aa14.58□□□□□ -0.08
SHMT1-204ENST00000395682 IFI27L1Q96BM0 104 aa14.58□□□□□ -0.08
SHMT1-204ENST00000395682 C11orf86A6NJI1 115 aa14.57□□□□□ -0.08
SHMT1-204ENST00000395682 HSBP1O75506 76 aa14.57□□□□□ -0.08
SHMT1-204ENST00000395682 FAM19A2Q8N3H0 131 aa14.57□□□□□ -0.08
SHMT1-204ENST00000395682 CHTOPQ9Y3Y2 248 aaKnown RBP14.57□□□□□ -0.08
SHMT1-204ENST00000395682 TMEM170BQ5T4T1 132 aa14.56□□□□□ -0.08
SHMT1-204ENST00000395682 KRTAP11-1Q8IUC1 163 aa14.56□□□□□ -0.08
SHMT1-204ENST00000395682 MT1HL1P0DM35 61 aa14.54□□□□□ -0.08
SHMT1-204ENST00000395682 SERTAD4-AS1Q5TG53 156 aa14.54□□□□□ -0.08
SHMT1-204ENST00000395682 TRAV12-1A0A0B4J245 112 aa14.53□□□□□ -0.08
SHMT1-204ENST00000395682 UBE2BP63146 152 aa14.53□□□□□ -0.08
SHMT1-204ENST00000395682 C22orf24Q9Y442 160 aa14.52□□□□□ -0.09
SHMT1-204ENST00000395682 SERF1AO75920 110 aa14.51□□□□□ -0.09
SHMT1-204ENST00000395682 REG3GQ6UW15 175 aa14.51□□□□□ -0.09
SHMT1-204ENST00000395682 IGLV7-43P04211 117 aa14.5□□□□□ -0.09
SHMT1-204ENST00000395682 LINC01600Q96MT4 127 aa14.5□□□□□ -0.09
SHMT1-204ENST00000395682 LINC00310P59036 64 aa14.49□□□□□ -0.09
SHMT1-204ENST00000395682 PFN2P35080 140 aa14.48□□□□□ -0.09
SHMT1-204ENST00000395682 LBHQ53QV2 105 aaPredicted RBP14.48□□□□□ -0.09
SHMT1-204ENST00000395682 NUPR1O60356 82 aa14.47□□□□□ -0.09
SHMT1-204ENST00000395682 SCO1O75880 301 aa14.47□□□□□ -0.09
SHMT1-204ENST00000395682 LEPROTL1O95214 131 aa14.46□□□□□ -0.09
SHMT1-204ENST00000395682 TMEM223A0PJW6 202 aa14.45□□□□□ -0.1
SHMT1-204ENST00000395682 TP73-AS1Q9UF72 201 aa14.45□□□□□ -0.1
SHMT1-204ENST00000395682 H0Y8G0 127 aa14.44□□□□□ -0.1
SHMT1-204ENST00000395682 ODF1Q14990 250 aa14.44□□□□□ -0.1
SHMT1-204ENST00000395682 ZNF625Q96I27 306 aaPredicted RBP14.44□□□□□ -0.1
SHMT1-204ENST00000395682 ERG28Q9UKR5 140 aa14.44□□□□□ -0.1
SHMT1-204ENST00000395682 PLA2G2DQ9UNK4 145 aa14.44□□□□□ -0.1
SHMT1-204ENST00000395682 MRPL55Q7Z7F7 128 aaKnown RBP14.43□□□□□ -0.1
SHMT1-204ENST00000395682 FABP4P15090 132 aa14.42□□□□□ -0.1
SHMT1-204ENST00000395682 SFTA2Q6UW10 78 aa14.42□□□□□ -0.1
SHMT1-204ENST00000395682 COX17Q14061 63 aa14.41□□□□□ -0.1
SHMT1-204ENST00000395682 DIRC1Q969H9 104 aa14.41□□□□□ -0.1
SHMT1-204ENST00000395682 HSPB8Q9UJY1 196 aa14.41□□□□□ -0.1
SHMT1-204ENST00000395682 LINC00167Q96N53 147 aa14.39□□□□□ -0.11
SHMT1-204ENST00000395682 KRTAP10-8P60410 259 aa14.38□□□□□ -0.11
SHMT1-204ENST00000395682 SND1-IT1Q9HBX3 110 aa14.38□□□□□ -0.11
SHMT1-204ENST00000395682 TNXBP22105 4242 aa14.37□□□□□ -0.11
SHMT1-204ENST00000395682 IGLV5-37A0A075B6J1 123 aa14.37□□□□□ -0.11
SHMT1-204ENST00000395682 GAGE10A6NGK3 116 aa14.37□□□□□ -0.11
SHMT1-204ENST00000395682 NKAPP1Q8N9T2 125 aa14.37□□□□□ -0.11
SHMT1-204ENST00000395682 RPL37AP8A6NKH3 93 aa14.36□□□□□ -0.11
SHMT1-204ENST00000395682 H0Y9J4 135 aa14.36□□□□□ -0.11
SHMT1-204ENST00000395682 LINC00158P58513 81 aa14.35□□□□□ -0.11
SHMT1-204ENST00000395682 HIST1H2BKO60814 126 aa14.34□□□□□ -0.11
SHMT1-204ENST00000395682 HIST1H2BJP06899 126 aa14.34□□□□□ -0.11
SHMT1-204ENST00000395682 HIST1H2BOP23527 126 aa14.34□□□□□ -0.11
SHMT1-204ENST00000395682 HIST1H2BBP33778 126 aa14.34□□□□□ -0.11
SHMT1-204ENST00000395682 HIST1H2BDP58876 126 aa14.34□□□□□ -0.11
SHMT1-204ENST00000395682 HIST1H2BCP62807 126 aa14.34□□□□□ -0.11
SHMT1-204ENST00000395682 HIST2H2BEQ16778 126 aa14.34□□□□□ -0.11
SHMT1-204ENST00000395682 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.34□□□□□ -0.11
SHMT1-204ENST00000395682 HIST1H2BHQ93079 126 aa14.34□□□□□ -0.11
SHMT1-204ENST00000395682 HIST1H2BNQ99877 126 aa14.34□□□□□ -0.11
SHMT1-204ENST00000395682 HIST1H2BMQ99879 126 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms