RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 POM121L12Q8N7R1 296 aa10.85□□□□□ -0.67
NPHP4-201ENST00000378156 C1orf158Q8N1D5 194 aa10.84□□□□□ -0.67
NPHP4-201ENST00000378156 PRUNE2Q8WUY3 3088 aa10.84□□□□□ -0.67
NPHP4-201ENST00000378156 SERP1Q9Y6X1 66 aa10.84□□□□□ -0.67
NPHP4-201ENST00000378156 TRAV7A0A075B6U4 112 aa10.84□□□□□ -0.67
NPHP4-201ENST00000378156 M0QXV9 152 aa10.83□□□□□ -0.68
NPHP4-201ENST00000378156 CDC42SE2Q9NRR3 84 aa10.83□□□□□ -0.68
NPHP4-201ENST00000378156 FAM19A1Q7Z5A9 133 aa10.82□□□□□ -0.68
NPHP4-201ENST00000378156 DHRS4-AS1Q9P1J3 65 aa10.82□□□□□ -0.68
NPHP4-201ENST00000378156 A6NED7 52 aa10.82□□□□□ -0.68
NPHP4-201ENST00000378156 COX17Q14061 63 aa10.82□□□□□ -0.68
NPHP4-201ENST00000378156 PTPRBP23467 1997 aa10.82□□□□□ -0.68
NPHP4-201ENST00000378156 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.82□□□□□ -0.68
NPHP4-201ENST00000378156 WFDC10BQ8IUB3 73 aa10.82□□□□□ -0.68
NPHP4-201ENST00000378156 M0R378 163 aa10.81□□□□□ -0.68
NPHP4-201ENST00000378156 C3orf84H3BNL1 204 aa10.8□□□□□ -0.68
NPHP4-201ENST00000378156 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.8□□□□□ -0.68
NPHP4-201ENST00000378156 LINC00242Q5T6M2 205 aa10.79□□□□□ -0.68
NPHP4-201ENST00000378156 CFAP54Q96N23 3096 aa10.79□□□□□ -0.68
NPHP4-201ENST00000378156 AGRNO00468 2067 aa10.79□□□□□ -0.68
NPHP4-201ENST00000378156 A0A0J9YWU9 116 aa10.79□□□□□ -0.68
NPHP4-201ENST00000378156 NANOS2P60321 138 aaKnown RBP10.79□□□□□ -0.68
NPHP4-201ENST00000378156 HRCT1Q6UXD1 115 aa10.78□□□□□ -0.68
NPHP4-201ENST00000378156 NTM-AS1Q6ZSK4 140 aa10.78□□□□□ -0.68
NPHP4-201ENST00000378156 CHCHD7Q9BUK0 85 aa10.78□□□□□ -0.68
NPHP4-201ENST00000378156 Q8N9L7 120 aa10.77□□□□□ -0.69
NPHP4-201ENST00000378156 KIF25-AS1Q9Y6Z4 181 aa10.77□□□□□ -0.69
NPHP4-201ENST00000378156 A0A087WZ39 114 aa10.77□□□□□ -0.69
NPHP4-201ENST00000378156 RPL28P46779 137 aaKnown RBP10.77□□□□□ -0.69
NPHP4-201ENST00000378156 Q8IZM0 81 aa10.77□□□□□ -0.69
NPHP4-201ENST00000378156 Q6ZSN1 163 aa10.76□□□□□ -0.69
NPHP4-201ENST00000378156 A0A096LNI7 61 aa10.75□□□□□ -0.69
NPHP4-201ENST00000378156 FAM19A5Q7Z5A7 132 aaPredicted RBP10.75□□□□□ -0.69
NPHP4-201ENST00000378156 ZNF73O43830 326 aaPredicted RBP10.75□□□□□ -0.69
NPHP4-201ENST00000378156 ADAMTSL4-AS1Q5T5F5 129 aa10.75□□□□□ -0.69
NPHP4-201ENST00000378156 WFDC13Q8IUB5 93 aa10.74□□□□□ -0.69
NPHP4-201ENST00000378156 COX6A2Q02221 97 aa10.74□□□□□ -0.69
NPHP4-201ENST00000378156 BEAN1Q3B7T3 259 aa10.74□□□□□ -0.69
NPHP4-201ENST00000378156 AMELXQ99217 191 aa10.74□□□□□ -0.69
NPHP4-201ENST00000378156 RETNQ9HD89 108 aa10.73□□□□□ -0.69
NPHP4-201ENST00000378156 FHL2Q14192 279 aa10.73□□□□□ -0.69
NPHP4-201ENST00000378156 SMIM1B2RUZ4 78 aa10.73□□□□□ -0.69
NPHP4-201ENST00000378156 LINC01546A6NGU7 62 aa10.72□□□□□ -0.69
NPHP4-201ENST00000378156 CDH23Q9H251 3354 aa10.72□□□□□ -0.69
NPHP4-201ENST00000378156 Q8N2B8 174 aa10.72□□□□□ -0.69
NPHP4-201ENST00000378156 LINC00315P59091 139 aa10.71□□□□□ -0.69
NPHP4-201ENST00000378156 F8P00451 2351 aa10.71□□□□□ -0.69
NPHP4-201ENST00000378156 PRR4Q16378 134 aa10.71□□□□□ -0.69
NPHP4-201ENST00000378156 CYSRT1A8MQ03 144 aa10.71□□□□□ -0.7
NPHP4-201ENST00000378156 IGKV2-28A0A075B6P5 120 aa10.7□□□□□ -0.7
NPHP4-201ENST00000378156 IGKV2D-28P01615 120 aa10.7□□□□□ -0.7
NPHP4-201ENST00000378156 TRIOO75962 3097 aa10.7□□□□□ -0.7
NPHP4-201ENST00000378156 IGLV4-60A0A075B6I1 120 aa10.69□□□□□ -0.7
NPHP4-201ENST00000378156 M0R2N4 97 aa10.69□□□□□ -0.7
NPHP4-201ENST00000378156 Q8N814 137 aa10.69□□□□□ -0.7
NPHP4-201ENST00000378156 CSDC2Q9Y534 153 aaKnown RBP10.69□□□□□ -0.7
NPHP4-201ENST00000378156 XIRP2A4UGR9 3374 aa10.69□□□□□ -0.7
NPHP4-201ENST00000378156 Q6ZTC4 211 aa10.68□□□□□ -0.7
NPHP4-201ENST00000378156 A0A087WVE0 104 aa10.68□□□□□ -0.7
NPHP4-201ENST00000378156 FAM19A4Q96LR4 140 aa10.68□□□□□ -0.7
NPHP4-201ENST00000378156 UNQ6190/PRO20217Q6UXQ8 127 aa10.67□□□□□ -0.7
NPHP4-201ENST00000378156 FAM30AQ9NZY2 134 aa10.67□□□□□ -0.7
NPHP4-201ENST00000378156 HECTD1Q9ULT8 2610 aa10.67□□□□□ -0.7
NPHP4-201ENST00000378156 PMAIP1Q13794 54 aa10.67□□□□□ -0.7
NPHP4-201ENST00000378156 ZNF706Q9Y5V0 76 aaPredicted RBP10.66□□□□□ -0.7
NPHP4-201ENST00000378156 COL27A1Q8IZC6 1860 aaPredicted RBP10.66□□□□□ -0.7
NPHP4-201ENST00000378156 PRYO14603 147 aa10.66□□□□□ -0.7
NPHP4-201ENST00000378156 LOC107984640A0A0U1RRK4 108 aa10.65□□□□□ -0.7
NPHP4-201ENST00000378156 TRBV7-7A0A0K0K1E9 115 aa10.64□□□□□ -0.71
NPHP4-201ENST00000378156 LRCOL1A6NCL2 159 aa10.64□□□□□ -0.71
NPHP4-201ENST00000378156 Q8N3U1 123 aa10.64□□□□□ -0.71
NPHP4-201ENST00000378156 SOSTDC1Q6X4U4 206 aa10.63□□□□□ -0.71
NPHP4-201ENST00000378156 CELA1Q9UNI1 258 aa10.63□□□□□ -0.71
NPHP4-201ENST00000378156 EGFEM1PQ0D2K5 195 aa10.62□□□□□ -0.71
NPHP4-201ENST00000378156 LY6G6CO95867 125 aa10.62□□□□□ -0.71
NPHP4-201ENST00000378156 CDIP1Q9H305 208 aa10.62□□□□□ -0.71
NPHP4-201ENST00000378156 Q9UF83 564 aa10.61□□□□□ -0.71
NPHP4-201ENST00000378156 A0A087WYN8 130 aa10.61□□□□□ -0.71
NPHP4-201ENST00000378156 A0A1B0GUV1 79 aa10.61□□□□□ -0.71
NPHP4-201ENST00000378156 C9orf116Q5BN46 136 aaPredicted RBP10.61□□□□□ -0.71
NPHP4-201ENST00000378156 C11orf72Q8NBR9 251 aa10.61□□□□□ -0.71
NPHP4-201ENST00000378156 RPL37AP8A6NKH3 93 aa10.6□□□□□ -0.71
NPHP4-201ENST00000378156 C7orf33Q8WU49 177 aa10.6□□□□□ -0.71
NPHP4-201ENST00000378156 LINC00208Q96KT6 92 aa10.6□□□□□ -0.71
NPHP4-201ENST00000378156 WDFY4Q6ZS81 3184 aa10.6□□□□□ -0.71
NPHP4-201ENST00000378156 C1orf137Q5JT78 98 aa10.59□□□□□ -0.71
NPHP4-201ENST00000378156 TRBV10-3A0A0K0K1G6 114 aa10.59□□□□□ -0.71
NPHP4-201ENST00000378156 PRR3P79522 188 aaKnown RBP10.59□□□□□ -0.71
NPHP4-201ENST00000378156 PPDPFQ9H3Y8 114 aa10.59□□□□□ -0.71
NPHP4-201ENST00000378156 NUPR2A6NF83 97 aa10.58□□□□□ -0.72
NPHP4-201ENST00000378156 FHL3Q13643 280 aa10.58□□□□□ -0.72
NPHP4-201ENST00000378156 TMEM254Q8TBM7 123 aa10.57□□□□□ -0.72
NPHP4-201ENST00000378156 LYPD5Q6UWN5 251 aa10.56□□□□□ -0.72
NPHP4-201ENST00000378156 SPINK6Q6UWN8 80 aa10.56□□□□□ -0.72
NPHP4-201ENST00000378156 MUC4Q99102 2169 aa10.56□□□□□ -0.72
NPHP4-201ENST00000378156 MGAQ8IWI9 3026 aa10.56□□□□□ -0.72
NPHP4-201ENST00000378156 LINC00474Q9P2X8 69 aa10.56□□□□□ -0.72
NPHP4-201ENST00000378156 KLK9Q2XQG4 91 aa10.55□□□□□ -0.72
NPHP4-201ENST00000378156 LINC00846Q9NV44 126 aa10.55□□□□□ -0.72
NPHP4-201ENST00000378156 SMCPP49901 116 aaPredicted RBP10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms