RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 A0A087WYN8 130 aa8.5□□□□□ -1.05
VPS13A-205ENST00000376636 PROK1P58294 105 aa8.5□□□□□ -1.05
VPS13A-205ENST00000376636 IGLV2-11P01706 119 aa8.5□□□□□ -1.05
VPS13A-205ENST00000376636 NAV2Q8IVL1 2488 aa8.48□□□□□ -1.05
VPS13A-205ENST00000376636 POLR2KP53803 58 aaKnown RBP8.48□□□□□ -1.05
VPS13A-205ENST00000376636 PIEZO2Q9H5I5 2752 aa8.48□□□□□ -1.05
VPS13A-205ENST00000376636 RETNLBQ9BQ08 111 aa8.48□□□□□ -1.05
VPS13A-205ENST00000376636 Q6ZTC4 211 aa8.48□□□□□ -1.05
VPS13A-205ENST00000376636 M0R2N4 97 aa8.48□□□□□ -1.05
VPS13A-205ENST00000376636 LY6G6CO95867 125 aa8.48□□□□□ -1.05
VPS13A-205ENST00000376636 TLN1Q9Y490 2541 aaKnown RBP8.47□□□□□ -1.05
VPS13A-205ENST00000376636 LTBP2Q14767 1821 aa8.47□□□□□ -1.05
VPS13A-205ENST00000376636 MSMPQ1L6U9 139 aa8.46□□□□□ -1.05
VPS13A-205ENST00000376636 IGLV5-52A0A0A0MRZ9 124 aa8.46□□□□□ -1.05
VPS13A-205ENST00000376636 A0A087WSZ3 146 aa8.45□□□□□ -1.06
VPS13A-205ENST00000376636 SETD2Q9BYW2 2564 aaPredicted RBP8.45□□□□□ -1.06
VPS13A-205ENST00000376636 IGIPA6NJ69 53 aa8.45□□□□□ -1.06
VPS13A-205ENST00000376636 LINC00482Q8N8I6 264 aa8.45□□□□□ -1.06
VPS13A-205ENST00000376636 C6orf48Q9UBA6 75 aa8.44□□□□□ -1.06
VPS13A-205ENST00000376636 IGKV2D-30A0A075B6S6 120 aa8.44□□□□□ -1.06
VPS13A-205ENST00000376636 SMIM1B2RUZ4 78 aa8.44□□□□□ -1.06
VPS13A-205ENST00000376636 IGKV2-30P06310 120 aa8.44□□□□□ -1.06
VPS13A-205ENST00000376636 PSMG3-AS1Q96PY0 264 aa8.44□□□□□ -1.06
VPS13A-205ENST00000376636 ABCA12Q86UK0 2595 aa8.44□□□□□ -1.06
VPS13A-205ENST00000376636 ATP11AUNQ6ZP68 121 aa8.44□□□□□ -1.06
VPS13A-205ENST00000376636 C2orf48Q96LS8 159 aa8.43□□□□□ -1.06
VPS13A-205ENST00000376636 LMO4P61968 165 aa8.43□□□□□ -1.06
VPS13A-205ENST00000376636 RPS28P62857 69 aaKnown RBP8.43□□□□□ -1.06
VPS13A-205ENST00000376636 UNQ6190/PRO20217Q6UXQ8 127 aa8.43□□□□□ -1.06
VPS13A-205ENST00000376636 A0A1B0GW54 56 aa8.42□□□□□ -1.06
VPS13A-205ENST00000376636 C6orf223Q8N319 242 aa8.42□□□□□ -1.06
VPS13A-205ENST00000376636 LINC00242Q5T6M2 205 aa8.42□□□□□ -1.06
VPS13A-205ENST00000376636 COL27A1Q8IZC6 1860 aaPredicted RBP8.42□□□□□ -1.06
VPS13A-205ENST00000376636 FLG2Q5D862 2391 aaPredicted RBP8.42□□□□□ -1.06
VPS13A-205ENST00000376636 LINC01556Q5JQF7 62 aa8.41□□□□□ -1.06
VPS13A-205ENST00000376636 LINC00337Q8N6G1 96 aa8.41□□□□□ -1.06
VPS13A-205ENST00000376636 Q8N2B8 174 aa8.41□□□□□ -1.06
VPS13A-205ENST00000376636 C9orf116Q5BN46 136 aaPredicted RBP8.4□□□□□ -1.06
VPS13A-205ENST00000376636 H3BPC8 53 aa8.4□□□□□ -1.06
VPS13A-205ENST00000376636 PRM2P04554 102 aa8.39□□□□□ -1.07
VPS13A-205ENST00000376636 CRIP2P52943 208 aaPredicted RBP8.39□□□□□ -1.07
VPS13A-205ENST00000376636 ZNF295-AS1Q8N0V1 137 aa8.39□□□□□ -1.07
VPS13A-205ENST00000376636 ANKRD17O75179 2603 aaKnown RBP8.39□□□□□ -1.07
VPS13A-205ENST00000376636 BCE1O60756 84 aa8.39□□□□□ -1.07
VPS13A-205ENST00000376636 COL4A4P53420 1690 aaPredicted RBP8.38□□□□□ -1.07
VPS13A-205ENST00000376636 INAFM1C9JVW0 142 aa8.38□□□□□ -1.07
VPS13A-205ENST00000376636 Q6ZSV7 163 aa8.38□□□□□ -1.07
VPS13A-205ENST00000376636 A0A1B0GUV1 79 aa8.38□□□□□ -1.07
VPS13A-205ENST00000376636 LINC01561Q8N1V8 128 aa8.38□□□□□ -1.07
VPS13A-205ENST00000376636 DEFB116Q30KQ4 102 aa8.38□□□□□ -1.07
VPS13A-205ENST00000376636 PRR3P79522 188 aaKnown RBP8.37□□□□□ -1.07
VPS13A-205ENST00000376636 PRR9Q5T870 116 aa8.37□□□□□ -1.07
VPS13A-205ENST00000376636 LINC00846Q9NV44 126 aa8.37□□□□□ -1.07
VPS13A-205ENST00000376636 SMIM29Q86T20 159 aa8.36□□□□□ -1.07
VPS13A-205ENST00000376636 BRWD1-AS2P59051 145 aa8.36□□□□□ -1.07
VPS13A-205ENST00000376636 COX6A2Q02221 97 aa8.36□□□□□ -1.07
VPS13A-205ENST00000376636 PKD1L2Q7Z442 2459 aa8.36□□□□□ -1.07
VPS13A-205ENST00000376636 AMELXQ99217 191 aa8.35□□□□□ -1.07
VPS13A-205ENST00000376636 ADAMTSL4-AS1Q5T5F5 129 aa8.35□□□□□ -1.07
VPS13A-205ENST00000376636 SSBP3-AS1Q7Z2R9 100 aa8.35□□□□□ -1.07
VPS13A-205ENST00000376636 Q9UF83 564 aa8.34□□□□□ -1.07
VPS13A-205ENST00000376636 TRAV22A0A0B4J277 110 aa8.33□□□□□ -1.08
VPS13A-205ENST00000376636 JMJD1CQ15652 2540 aa8.33□□□□□ -1.08
VPS13A-205ENST00000376636 IGLV1-40P01703 118 aa8.33□□□□□ -1.08
VPS13A-205ENST00000376636 C4orf26Q17RF5 130 aa8.33□□□□□ -1.08
VPS13A-205ENST00000376636 C11orf21Q9P2W6 132 aa8.32□□□□□ -1.08
VPS13A-205ENST00000376636 PCSK5Q92824 1860 aa8.32□□□□□ -1.08
VPS13A-205ENST00000376636 CRIPTQ9P021 101 aa8.31□□□□□ -1.08
VPS13A-205ENST00000376636 TSPEAR-AS2P59090 65 aa8.3□□□□□ -1.08
VPS13A-205ENST00000376636 LINC01006Q8NI28 216 aa8.29□□□□□ -1.08
VPS13A-205ENST00000376636 GAS8-AS1O95177 125 aa8.29□□□□□ -1.08
VPS13A-205ENST00000376636 C1orf229Q6ZS94 237 aaPredicted RBP8.28□□□□□ -1.08
VPS13A-205ENST00000376636 Q8NA96 180 aa8.28□□□□□ -1.08
VPS13A-205ENST00000376636 USP9XQ93008 2570 aaPredicted RBP8.28□□□□□ -1.08
VPS13A-205ENST00000376636 CYP4F30PQ9H0H9 118 aa8.28□□□□□ -1.08
VPS13A-205ENST00000376636 C10orf99Q6UWK7 81 aa8.27□□□□□ -1.08
VPS13A-205ENST00000376636 Q6ZPA2 131 aa8.27□□□□□ -1.08
VPS13A-205ENST00000376636 C1orf134Q5TEV5 83 aa8.27□□□□□ -1.09
VPS13A-205ENST00000376636 IGLV4-60A0A075B6I1 120 aa8.27□□□□□ -1.09
VPS13A-205ENST00000376636 COL4A3Q01955 1670 aa8.27□□□□□ -1.09
VPS13A-205ENST00000376636 CDIP1Q9H305 208 aa8.27□□□□□ -1.09
VPS13A-205ENST00000376636 LINC00313P59037 77 aa8.26□□□□□ -1.09
VPS13A-205ENST00000376636 IGLV8-61A0A075B6I0 122 aa8.26□□□□□ -1.09
VPS13A-205ENST00000376636 LY6G6DO95868 133 aa8.26□□□□□ -1.09
VPS13A-205ENST00000376636 FHL2Q14192 279 aa8.26□□□□□ -1.09
VPS13A-205ENST00000376636 A8MTW9 85 aa8.25□□□□□ -1.09
VPS13A-205ENST00000376636 C11orf71Q6IPW1 123 aa8.25□□□□□ -1.09
VPS13A-205ENST00000376636 PIEZO1Q92508 2521 aa8.25□□□□□ -1.09
VPS13A-205ENST00000376636 UQCR11O14957 56 aa8.25□□□□□ -1.09
VPS13A-205ENST00000376636 C11orf72Q8NBR9 251 aa8.25□□□□□ -1.09
VPS13A-205ENST00000376636 PLA2G5P39877 138 aa8.24□□□□□ -1.09
VPS13A-205ENST00000376636 SPATA3Q8NHX4 192 aa8.24□□□□□ -1.09
VPS13A-205ENST00000376636 SPACA4Q8TDM5 124 aa8.24□□□□□ -1.09
VPS13A-205ENST00000376636 MOBPQ13875 183 aa8.23□□□□□ -1.09
VPS13A-205ENST00000376636 C18orf65Q6ZTR6 163 aa8.23□□□□□ -1.09
VPS13A-205ENST00000376636 LOC101927531A0A1B0GV80 90 aa8.23□□□□□ -1.09
VPS13A-205ENST00000376636 SPTBN4Q9H254 2564 aa8.23□□□□□ -1.09
VPS13A-205ENST00000376636 KIAA0087Q14695 138 aa8.23□□□□□ -1.09
VPS13A-205ENST00000376636 LINC01600Q96MT4 127 aa8.23□□□□□ -1.09
VPS13A-205ENST00000376636 LOC110117498A0A087WWA1 95 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms