RNA–Protein interactions for RNA: ENST00000366290.2

YBX3-204, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 512 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-204ENST00000366290 Q6ZUT4 128 aa5.03□□□□□ -1.6
YBX3-204ENST00000366290 RMI2Q96E14 147 aa5.03□□□□□ -1.6
YBX3-204ENST00000366290 TIMM21Q9BVV7 248 aa5.03□□□□□ -1.6
YBX3-204ENST00000366290 CDC42SE2Q9NRR3 84 aa5.03□□□□□ -1.6
YBX3-204ENST00000366290 IGIPA6NJ69 53 aa5.02□□□□□ -1.61
YBX3-204ENST00000366290 LINC00614P0C842 121 aa5.02□□□□□ -1.61
YBX3-204ENST00000366290 KRTAP10-1P60331 282 aa5.02□□□□□ -1.61
YBX3-204ENST00000366290 KRTAP10-5P60370 271 aa5.02□□□□□ -1.61
YBX3-204ENST00000366290 MRPS36P82909 103 aaKnown RBP5.02□□□□□ -1.61
YBX3-204ENST00000366290 REG3AQ06141 175 aa5.02□□□□□ -1.61
YBX3-204ENST00000366290 ORMDL2Q53FV1 153 aa5.02□□□□□ -1.61
YBX3-204ENST00000366290 RNASE13Q5GAN3 156 aaKnown RBP5.02□□□□□ -1.61
YBX3-204ENST00000366290 AMMECR1LQ6DCA0 310 aa5.02□□□□□ -1.61
YBX3-204ENST00000366290 C2orf66Q6UXQ4 117 aa5.02□□□□□ -1.61
YBX3-204ENST00000366290 FA2HQ7L5A8 372 aa5.02□□□□□ -1.61
YBX3-204ENST00000366290 ZNF664Q8N3J9 261 aa5.02□□□□□ -1.61
YBX3-204ENST00000366290 OR5A1Q8NGJ0 315 aa5.02□□□□□ -1.61
YBX3-204ENST00000366290 TOMM6Q96B49 74 aa5.02□□□□□ -1.61
YBX3-204ENST00000366290 SPANXA1Q9NS26 97 aa5.02□□□□□ -1.61
YBX3-204ENST00000366290 HIST1H2BKO60814 126 aa5.01□□□□□ -1.61
YBX3-204ENST00000366290 HIST1H2BJP06899 126 aa5.01□□□□□ -1.61
YBX3-204ENST00000366290 HIST1H2BOP23527 126 aa5.01□□□□□ -1.61
YBX3-204ENST00000366290 HIST1H2BBP33778 126 aa5.01□□□□□ -1.61
YBX3-204ENST00000366290 FUSP35637 526 aaKnown RBP eCLIP5.01□□□□□ -1.61
YBX3-204ENST00000366290 HIST1H2BDP58876 126 aa5.01□□□□□ -1.61
YBX3-204ENST00000366290 HIST1H2BCP62807 126 aa5.01□□□□□ -1.61
YBX3-204ENST00000366290 WFDC2Q14508 124 aa5.01□□□□□ -1.61
YBX3-204ENST00000366290 MIAQ16674 131 aa5.01□□□□□ -1.61
YBX3-204ENST00000366290 HIST2H2BEQ16778 126 aa5.01□□□□□ -1.61
YBX3-204ENST00000366290 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.01□□□□□ -1.61
YBX3-204ENST00000366290 LINC00173Q6ZV60 143 aa5.01□□□□□ -1.61
YBX3-204ENST00000366290 HIST1H2BHQ93079 126 aa5.01□□□□□ -1.61
YBX3-204ENST00000366290 HIST1H2BNQ99877 126 aa5.01□□□□□ -1.61
YBX3-204ENST00000366290 HIST1H2BMQ99879 126 aa5.01□□□□□ -1.61
YBX3-204ENST00000366290 CYSLTR1Q9Y271 337 aa5.01□□□□□ -1.61
YBX3-204ENST00000366290 VPS13BQ7Z7G8 4022 aa5□□□□□ -1.61
YBX3-204ENST00000366290 MYCBP2O75592 4640 aa5□□□□□ -1.61
YBX3-204ENST00000366290 DMBT1Q9UGM3 2413 aaPredicted RBP5□□□□□ -1.61
YBX3-204ENST00000366290 IGLV10-54A0A075B6I4 117 aa5□□□□□ -1.61
YBX3-204ENST00000366290 IGKV2D-24A0A075B6R9 120 aa5□□□□□ -1.61
YBX3-204ENST00000366290 NUPR1O60356 82 aa5□□□□□ -1.61
YBX3-204ENST00000366290 CRPP02741 224 aa5□□□□□ -1.61
YBX3-204ENST00000366290 PMCHL1Q16048 86 aa5□□□□□ -1.61
YBX3-204ENST00000366290 TMEM101Q96IK0 257 aa5□□□□□ -1.61
YBX3-204ENST00000366290 TRAV8-4A0A0B4J246 113 aa4.99□□□□□ -1.61
YBX3-204ENST00000366290 IGKV3OR2-268A0A0C4DH90 116 aa4.99□□□□□ -1.61
YBX3-204ENST00000366290 LINC00959A0A1B0GUT2 108 aa4.99□□□□□ -1.61
YBX3-204ENST00000366290 SERF1AO75920 110 aa4.99□□□□□ -1.61
YBX3-204ENST00000366290 KRTAP10-12P60413 245 aa4.99□□□□□ -1.61
YBX3-204ENST00000366290 RAB5BP61020 215 aa4.99□□□□□ -1.61
YBX3-204ENST00000366290 SMAGPQ0VAQ4 97 aa4.99□□□□□ -1.61
YBX3-204ENST00000366290 PDZD11Q5EBL8 140 aa4.99□□□□□ -1.61
YBX3-204ENST00000366290 Q6ZSA8 131 aa4.99□□□□□ -1.61
YBX3-204ENST00000366290 CHCHD1Q96BP2 118 aaKnown RBP4.99□□□□□ -1.61
YBX3-204ENST00000366290 AMELXQ99217 191 aa4.99□□□□□ -1.61
YBX3-204ENST00000366290 TIMM17AQ99595 171 aa4.99□□□□□ -1.61
YBX3-204ENST00000366290 SRRM2Q9UQ35 2752 aaKnown RBP4.99□□□□□ -1.61
YBX3-204ENST00000366290 HBDP02042 147 aa4.98□□□□□ -1.61
YBX3-204ENST00000366290 G0S2P27469 103 aa4.98□□□□□ -1.61
YBX3-204ENST00000366290 CXCL6P80162 114 aa4.98□□□□□ -1.61
YBX3-204ENST00000366290 LINC01620Q4KN68 170 aa4.98□□□□□ -1.61
YBX3-204ENST00000366290 BAGE3Q86Y29 109 aa4.98□□□□□ -1.61
YBX3-204ENST00000366290 FAM19A2Q8N3H0 131 aa4.98□□□□□ -1.61
YBX3-204ENST00000366290 BAALCQ8WXS3 180 aa4.98□□□□□ -1.61
YBX3-204ENST00000366290 CHCHD10Q8WYQ3 142 aaPredicted RBP4.98□□□□□ -1.61
YBX3-204ENST00000366290 TMEM141Q96I45 108 aa4.98□□□□□ -1.61
YBX3-204ENST00000366290 TRAV13-1A0A0B4J241 112 aa4.97□□□□□ -1.61
YBX3-204ENST00000366290 CCL25O15444 150 aa4.97□□□□□ -1.61
YBX3-204ENST00000366290 UBE2D1P51668 147 aa4.97□□□□□ -1.61
YBX3-204ENST00000366290 COA6Q5JTJ3 125 aaKnown RBP4.97□□□□□ -1.61
YBX3-204ENST00000366290 SCGB3A1Q96QR1 104 aa4.97□□□□□ -1.61
YBX3-204ENST00000366290 FLG2Q5D862 2391 aaPredicted RBP4.96□□□□□ -1.62
YBX3-204ENST00000366290 LINC01549A6NIU2 74 aa4.96□□□□□ -1.62
YBX3-204ENST00000366290 LECT2O14960 151 aa4.96□□□□□ -1.62
YBX3-204ENST00000366290 HSBP1O75506 76 aa4.96□□□□□ -1.62
YBX3-204ENST00000366290 XCL1P47992 114 aa4.96□□□□□ -1.62
YBX3-204ENST00000366290 COX6A2Q02221 97 aa4.96□□□□□ -1.62
YBX3-204ENST00000366290 FAM19A3Q7Z5A8 133 aa4.96□□□□□ -1.62
YBX3-204ENST00000366290 IGHV3OR16-9A0A0B4J2B5 98 aa4.95□□□□□ -1.62
YBX3-204ENST00000366290 C1orf196B1AJZ1 125 aa4.95□□□□□ -1.62
YBX3-204ENST00000366290 SS18Q15532 418 aa4.95□□□□□ -1.62
YBX3-204ENST00000366290 Q6ZN92 141 aa4.95□□□□□ -1.62
YBX3-204ENST00000366290 TEX43Q6ZNM6 134 aa4.95□□□□□ -1.62
YBX3-204ENST00000366290 C15orf56Q8N910 161 aa4.95□□□□□ -1.62
YBX3-204ENST00000366290 VCX2Q9H322 139 aa4.95□□□□□ -1.62
YBX3-204ENST00000366290 CST9LQ9H4G1 147 aa4.95□□□□□ -1.62
YBX3-204ENST00000366290 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.94□□□□□ -1.62
YBX3-204ENST00000366290 ATP5LO75964 103 aa4.94□□□□□ -1.62
YBX3-204ENST00000366290 PMVKQ15126 192 aa4.94□□□□□ -1.62
YBX3-204ENST00000366290 IGLV4-69A0A075B6H9 119 aa4.93□□□□□ -1.62
YBX3-204ENST00000366290 A0A0J9YXV3 536 aa4.93□□□□□ -1.62
YBX3-204ENST00000366290 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.93□□□□□ -1.62
YBX3-204ENST00000366290 INAFM2P0DMQ5 153 aa4.93□□□□□ -1.62
YBX3-204ENST00000366290 NDUFA6P56556 154 aa4.93□□□□□ -1.62
YBX3-204ENST00000366290 CNBPP62633 177 aaKnown RBP4.93□□□□□ -1.62
YBX3-204ENST00000366290 Q5VSD8 79 aa4.93□□□□□ -1.62
YBX3-204ENST00000366290 C5orf38Q86SI9 138 aa4.93□□□□□ -1.62
YBX3-204ENST00000366290 IFI27L1Q96BM0 104 aa4.93□□□□□ -1.62
YBX3-204ENST00000366290 C2orf88Q9BSF0 95 aa4.93□□□□□ -1.62
YBX3-204ENST00000366290 GVQW2A0A096LPI5 108 aaPredicted RBP4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms