RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 ZNF73O43830 326 aaPredicted RBP8.52□□□□□ -1.05
COL9A1-202ENST00000357250 POM121L12Q8N7R1 296 aa8.52□□□□□ -1.05
COL9A1-202ENST00000357250 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.52□□□□□ -1.05
COL9A1-202ENST00000357250 SMR3AQ99954 134 aa8.52□□□□□ -1.05
COL9A1-202ENST00000357250 FAM19A5Q7Z5A7 132 aaPredicted RBP8.52□□□□□ -1.05
COL9A1-202ENST00000357250 FAM19A3Q7Z5A8 133 aa8.52□□□□□ -1.05
COL9A1-202ENST00000357250 LINC00474Q9P2X8 69 aa8.52□□□□□ -1.05
COL9A1-202ENST00000357250 IGLV1-51P01701 117 aa8.52□□□□□ -1.05
COL9A1-202ENST00000357250 EGFEM1PQ0D2K5 195 aa8.52□□□□□ -1.05
COL9A1-202ENST00000357250 F8WDY8 70 aa8.51□□□□□ -1.05
COL9A1-202ENST00000357250 C7orf33Q8WU49 177 aa8.51□□□□□ -1.05
COL9A1-202ENST00000357250 USP24Q9UPU5 2620 aa8.51□□□□□ -1.05
COL9A1-202ENST00000357250 RPL28P46779 137 aaKnown RBP8.51□□□□□ -1.05
COL9A1-202ENST00000357250 NDUFC2-KCTD14E9PQ53 114 aa8.51□□□□□ -1.05
COL9A1-202ENST00000357250 BEAN1Q3B7T3 259 aa8.5□□□□□ -1.05
COL9A1-202ENST00000357250 AMELXQ99217 191 aa8.5□□□□□ -1.05
COL9A1-202ENST00000357250 TET2Q6N021 2002 aaPredicted RBP8.5□□□□□ -1.05
COL9A1-202ENST00000357250 LOC100131303A0A0U1RQF7 123 aa8.5□□□□□ -1.05
COL9A1-202ENST00000357250 SMIM1B2RUZ4 78 aa8.5□□□□□ -1.05
COL9A1-202ENST00000357250 COX7CP15954 63 aa8.5□□□□□ -1.05
COL9A1-202ENST00000357250 C1orf158Q8N1D5 194 aa8.5□□□□□ -1.05
COL9A1-202ENST00000357250 F8P00451 2351 aa8.49□□□□□ -1.05
COL9A1-202ENST00000357250 LINC01561Q8N1V8 128 aa8.49□□□□□ -1.05
COL9A1-202ENST00000357250 C16orf95Q9H693 158 aa8.49□□□□□ -1.05
COL9A1-202ENST00000357250 CASC2Q6XLA1 102 aa8.48□□□□□ -1.05
COL9A1-202ENST00000357250 CYSRT1A8MQ03 144 aa8.48□□□□□ -1.05
COL9A1-202ENST00000357250 MRPL55Q7Z7F7 128 aaKnown RBP8.48□□□□□ -1.05
COL9A1-202ENST00000357250 SCXQ7RTU7 201 aa8.48□□□□□ -1.05
COL9A1-202ENST00000357250 WFDC10AQ9H1F0 79 aa8.48□□□□□ -1.05
COL9A1-202ENST00000357250 FREM2Q5SZK8 3169 aa8.47□□□□□ -1.05
COL9A1-202ENST00000357250 FRYLO94915 3013 aa8.47□□□□□ -1.05
COL9A1-202ENST00000357250 PRB2P02812 416 aaPredicted RBP8.47□□□□□ -1.05
COL9A1-202ENST00000357250 NTM-AS1Q6ZSK4 140 aa8.47□□□□□ -1.05
COL9A1-202ENST00000357250 IGLV2-18A0A075B6J9 118 aa8.46□□□□□ -1.05
COL9A1-202ENST00000357250 XGP55808 180 aa8.46□□□□□ -1.05
COL9A1-202ENST00000357250 BRK1Q8WUW1 75 aa8.46□□□□□ -1.05
COL9A1-202ENST00000357250 AKAP13Q12802 2813 aa8.46□□□□□ -1.05
COL9A1-202ENST00000357250 IGKV2-28A0A075B6P5 120 aa8.46□□□□□ -1.06
COL9A1-202ENST00000357250 IGKV2D-28P01615 120 aa8.46□□□□□ -1.06
COL9A1-202ENST00000357250 CFAP46Q8IYW2 2715 aa8.46□□□□□ -1.06
COL9A1-202ENST00000357250 M0QXV9 152 aa8.45□□□□□ -1.06
COL9A1-202ENST00000357250 IGHV4-30-4P0DP06 118 aa8.45□□□□□ -1.06
COL9A1-202ENST00000357250 A0A1B0GUV1 79 aa8.45□□□□□ -1.06
COL9A1-202ENST00000357250 A0A096LNI7 61 aa8.45□□□□□ -1.06
COL9A1-202ENST00000357250 A0A096LNJ9 63 aa8.45□□□□□ -1.06
COL9A1-202ENST00000357250 AGRNO00468 2067 aa8.44□□□□□ -1.06
COL9A1-202ENST00000357250 C3orf84H3BNL1 204 aa8.44□□□□□ -1.06
COL9A1-202ENST00000357250 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.44□□□□□ -1.06
COL9A1-202ENST00000357250 BOD1L1Q8NFC6 3051 aa8.44□□□□□ -1.06
COL9A1-202ENST00000357250 PRR15LQ9BU68 103 aa8.44□□□□□ -1.06
COL9A1-202ENST00000357250 Q8N814 137 aa8.43□□□□□ -1.06
COL9A1-202ENST00000357250 PTPRBP23467 1997 aa8.43□□□□□ -1.06
COL9A1-202ENST00000357250 FHL2Q14192 279 aa8.43□□□□□ -1.06
COL9A1-202ENST00000357250 WFDC10BQ8IUB3 73 aa8.42□□□□□ -1.06
COL9A1-202ENST00000357250 TRAV7A0A075B6U4 112 aa8.41□□□□□ -1.06
COL9A1-202ENST00000357250 LINC00526Q96FQ7 95 aa8.41□□□□□ -1.06
COL9A1-202ENST00000357250 PLA2G2AP14555 144 aa8.41□□□□□ -1.06
COL9A1-202ENST00000357250 UNQ6190/PRO20217Q6UXQ8 127 aa8.41□□□□□ -1.06
COL9A1-202ENST00000357250 C2orf48Q96LS8 159 aa8.41□□□□□ -1.06
COL9A1-202ENST00000357250 FRYQ5TBA9 3013 aa8.41□□□□□ -1.06
COL9A1-202ENST00000357250 K7ERS5 55 aa8.41□□□□□ -1.06
COL9A1-202ENST00000357250 TSPEAR-AS2P59090 65 aa8.41□□□□□ -1.06
COL9A1-202ENST00000357250 MGAM2Q2M2H8 2515 aa8.4□□□□□ -1.06
COL9A1-202ENST00000357250 LINC01546A6NGU7 62 aa8.4□□□□□ -1.06
COL9A1-202ENST00000357250 ATRQ13535 2644 aa8.4□□□□□ -1.06
COL9A1-202ENST00000357250 Q8N9L7 120 aa8.39□□□□□ -1.07
COL9A1-202ENST00000357250 A0A0J9YWU9 116 aa8.39□□□□□ -1.07
COL9A1-202ENST00000357250 PLAC8L1A1L4L8 177 aa8.38□□□□□ -1.07
COL9A1-202ENST00000357250 FLNAP21333 2647 aaKnown RBP8.38□□□□□ -1.07
COL9A1-202ENST00000357250 IGLV4-60A0A075B6I1 120 aa8.38□□□□□ -1.07
COL9A1-202ENST00000357250 TRBV10-3A0A0K0K1G6 114 aa8.38□□□□□ -1.07
COL9A1-202ENST00000357250 LINC00694P0DN24 101 aa8.38□□□□□ -1.07
COL9A1-202ENST00000357250 COX6A2Q02221 97 aa8.38□□□□□ -1.07
COL9A1-202ENST00000357250 MPLKIPQ8TAP9 179 aa8.38□□□□□ -1.07
COL9A1-202ENST00000357250 NUPR2A6NF83 97 aa8.38□□□□□ -1.07
COL9A1-202ENST00000357250 NANOS2P60321 138 aaKnown RBP8.38□□□□□ -1.07
COL9A1-202ENST00000357250 KIF25-AS1Q9Y6Z4 181 aa8.38□□□□□ -1.07
COL9A1-202ENST00000357250 WFDC13Q8IUB5 93 aa8.37□□□□□ -1.07
COL9A1-202ENST00000357250 MAST4O15021 2626 aa8.37□□□□□ -1.07
COL9A1-202ENST00000357250 C10orf25Q5T742 122 aa8.37□□□□□ -1.07
COL9A1-202ENST00000357250 NBEAQ8NFP9 2946 aa8.37□□□□□ -1.07
COL9A1-202ENST00000357250 REV3LO60673 3130 aa8.37□□□□□ -1.07
COL9A1-202ENST00000357250 HELZ2Q9BYK8 2649 aaKnown RBP8.37□□□□□ -1.07
COL9A1-202ENST00000357250 SMIM26A0A096LP01 95 aa8.36□□□□□ -1.07
COL9A1-202ENST00000357250 ADAMTSL4-AS1Q5T5F5 129 aa8.36□□□□□ -1.07
COL9A1-202ENST00000357250 RPL37AP8A6NKH3 93 aa8.36□□□□□ -1.07
COL9A1-202ENST00000357250 C1orf137Q5JT78 98 aa8.36□□□□□ -1.07
COL9A1-202ENST00000357250 ITPR3Q14573 2671 aa8.36□□□□□ -1.07
COL9A1-202ENST00000357250 CCDC179H3BU77 68 aa8.35□□□□□ -1.07
COL9A1-202ENST00000357250 Q8N2B8 174 aa8.35□□□□□ -1.07
COL9A1-202ENST00000357250 PPDPFQ9H3Y8 114 aa8.35□□□□□ -1.07
COL9A1-202ENST00000357250 OXLD1Q5BKU9 147 aa8.35□□□□□ -1.07
COL9A1-202ENST00000357250 SPTSSBQ8NFR3 76 aa8.35□□□□□ -1.07
COL9A1-202ENST00000357250 LRCOL1A6NCL2 159 aa8.35□□□□□ -1.07
COL9A1-202ENST00000357250 MYO15AQ9UKN7 3530 aa8.35□□□□□ -1.07
COL9A1-202ENST00000357250 PRYO14603 147 aa8.34□□□□□ -1.07
COL9A1-202ENST00000357250 SNURFQ9Y675 71 aa8.34□□□□□ -1.07
COL9A1-202ENST00000357250 REG3GQ6UW15 175 aa8.34□□□□□ -1.07
COL9A1-202ENST00000357250 SPTBN5Q9NRC6 3674 aaKnown RBP8.34□□□□□ -1.07
COL9A1-202ENST00000357250 SVIPQ8NHG7 77 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms