RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 C6orf223Q8N319 242 aa6.66□□□□□ -1.34
HOXA1-201ENST00000343060 MRAPQ8TCY5 172 aa6.66□□□□□ -1.34
HOXA1-201ENST00000343060 ZNF561-AS1K7EIQ3 104 aa6.66□□□□□ -1.34
HOXA1-201ENST00000343060 LINC00575Q6W349 94 aa6.66□□□□□ -1.34
HOXA1-201ENST00000343060 C11orf68Q9H3H3 251 aaKnown RBP6.66□□□□□ -1.34
HOXA1-201ENST00000343060 KIAA0087Q14695 138 aa6.65□□□□□ -1.34
HOXA1-201ENST00000343060 CSNK1G2-AS1Q8NCQ2 148 aa6.65□□□□□ -1.34
HOXA1-201ENST00000343060 C2CD3Q4AC94 2353 aa6.65□□□□□ -1.34
HOXA1-201ENST00000343060 SPG11Q96JI7 2443 aa6.65□□□□□ -1.35
HOXA1-201ENST00000343060 IGHV4-28A0A0C4DH34 117 aa6.65□□□□□ -1.35
HOXA1-201ENST00000343060 CMC4P56277 68 aaPredicted RBP6.65□□□□□ -1.35
HOXA1-201ENST00000343060 IGHV4-31P0DP07 118 aa6.64□□□□□ -1.35
HOXA1-201ENST00000343060 PRR3P79522 188 aaKnown RBP6.64□□□□□ -1.35
HOXA1-201ENST00000343060 CELSR2Q9HCU4 2923 aa6.64□□□□□ -1.35
HOXA1-201ENST00000343060 LINC01547P58512 204 aaPredicted RBP6.64□□□□□ -1.35
HOXA1-201ENST00000343060 RBM3P98179 157 aaKnown RBP6.64□□□□□ -1.35
HOXA1-201ENST00000343060 C6orf99Q4VX62 202 aa6.64□□□□□ -1.35
HOXA1-201ENST00000343060 C9orf66Q5T8R8 295 aa6.64□□□□□ -1.35
HOXA1-201ENST00000343060 CXCL6P80162 114 aa6.62□□□□□ -1.35
HOXA1-201ENST00000343060 Q8NDZ9 215 aa6.62□□□□□ -1.35
HOXA1-201ENST00000343060 NOTCH3Q9UM47 2321 aa6.62□□□□□ -1.35
HOXA1-201ENST00000343060 H3BQ85 93 aa6.62□□□□□ -1.35
HOXA1-201ENST00000343060 PDE6GP18545 87 aa6.62□□□□□ -1.35
HOXA1-201ENST00000343060 Q6ZVQ6 151 aa6.62□□□□□ -1.35
HOXA1-201ENST00000343060 LINC00612Q8N6U2 182 aa6.62□□□□□ -1.35
HOXA1-201ENST00000343060 MAPK1IP1LQ8NDC0 245 aa6.62□□□□□ -1.35
HOXA1-201ENST00000343060 C19orf73Q9NVV2 129 aa6.62□□□□□ -1.35
HOXA1-201ENST00000343060 CR1P17927 2039 aa6.62□□□□□ -1.35
HOXA1-201ENST00000343060 MUC7Q8TAX7 377 aa6.61□□□□□ -1.35
HOXA1-201ENST00000343060 M0R2N4 97 aa6.61□□□□□ -1.35
HOXA1-201ENST00000343060 CCL24O00175 119 aa6.6□□□□□ -1.35
HOXA1-201ENST00000343060 CD164L2Q6UWJ8 174 aa6.6□□□□□ -1.35
HOXA1-201ENST00000343060 AKAP9Q99996 3911 aa6.6□□□□□ -1.35
HOXA1-201ENST00000343060 DOPEY1Q5JWR5 2465 aa6.6□□□□□ -1.35
HOXA1-201ENST00000343060 TRAV10A0A0B4J240 114 aa6.59□□□□□ -1.35
HOXA1-201ENST00000343060 PLA2G2AP14555 144 aa6.59□□□□□ -1.35
HOXA1-201ENST00000343060 C16orf95Q9H693 158 aa6.59□□□□□ -1.35
HOXA1-201ENST00000343060 NDUFC1O43677 76 aa6.59□□□□□ -1.35
HOXA1-201ENST00000343060 IGLV6-57P01721 117 aa6.59□□□□□ -1.35
HOXA1-201ENST00000343060 WFDC10AQ9H1F0 79 aa6.59□□□□□ -1.35
HOXA1-201ENST00000343060 PRO0628Q9UI54 55 aa6.59□□□□□ -1.35
HOXA1-201ENST00000343060 MXRA5Q9NR99 2828 aa6.59□□□□□ -1.36
HOXA1-201ENST00000343060 RPL35AP18077 110 aaKnown RBP6.58□□□□□ -1.36
HOXA1-201ENST00000343060 ATP5EP56381 51 aaPredicted RBP6.58□□□□□ -1.36
HOXA1-201ENST00000343060 SMIM26A0A096LP01 95 aa6.58□□□□□ -1.36
HOXA1-201ENST00000343060 TRBV7-4A0A0J9YYF1 115 aa6.58□□□□□ -1.36
HOXA1-201ENST00000343060 GYPEP15421 78 aa6.58□□□□□ -1.36
HOXA1-201ENST00000343060 LAMTOR3Q9UHA4 124 aa6.58□□□□□ -1.36
HOXA1-201ENST00000343060 RNASE1P07998 156 aaKnown RBP6.57□□□□□ -1.36
HOXA1-201ENST00000343060 CLPSL2Q6UWE3 100 aa6.57□□□□□ -1.36
HOXA1-201ENST00000343060 FP248Q71RG6 208 aaPredicted RBP6.57□□□□□ -1.36
HOXA1-201ENST00000343060 RMI2Q96E14 147 aa6.57□□□□□ -1.36
HOXA1-201ENST00000343060 ZANQ9Y493 2812 aa6.57□□□□□ -1.36
HOXA1-201ENST00000343060 HAMPP81172 84 aa6.57□□□□□ -1.36
HOXA1-201ENST00000343060 ZNF843Q8N446 348 aa6.57□□□□□ -1.36
HOXA1-201ENST00000343060 USP9YO00507 2555 aaPredicted RBP6.57□□□□□ -1.36
HOXA1-201ENST00000343060 F8WEM9 126 aa6.56□□□□□ -1.36
HOXA1-201ENST00000343060 IGLV1-51P01701 117 aa6.56□□□□□ -1.36
HOXA1-201ENST00000343060 C9orf116Q5BN46 136 aaPredicted RBP6.56□□□□□ -1.36
HOXA1-201ENST00000343060 LINC00336Q6ZUF6 198 aa6.56□□□□□ -1.36
HOXA1-201ENST00000343060 CHCHD10Q8WYQ3 142 aaPredicted RBP6.56□□□□□ -1.36
HOXA1-201ENST00000343060 MAP1AP78559 2803 aaPredicted RBP6.56□□□□□ -1.36
HOXA1-201ENST00000343060 Q6ZQY7 126 aa6.55□□□□□ -1.36
HOXA1-201ENST00000343060 SNURFQ9Y675 71 aa6.55□□□□□ -1.36
HOXA1-201ENST00000343060 ITPR1Q14643 2758 aa6.55□□□□□ -1.36
HOXA1-201ENST00000343060 MYO9AB2RTY4 2548 aa6.55□□□□□ -1.36
HOXA1-201ENST00000343060 A0A0J9YWU9 116 aa6.55□□□□□ -1.36
HOXA1-201ENST00000343060 ERC2-IT1O76042 136 aa6.55□□□□□ -1.36
HOXA1-201ENST00000343060 IGHV4-30-4P0DP06 118 aa6.55□□□□□ -1.36
HOXA1-201ENST00000343060 Q8N3U1 123 aa6.55□□□□□ -1.36
HOXA1-201ENST00000343060 SPATA3Q8NHX4 192 aa6.55□□□□□ -1.36
HOXA1-201ENST00000343060 TRBV7-6A0A0J9YX20 115 aa6.54□□□□□ -1.36
HOXA1-201ENST00000343060 LINC00269Q8N2A0 174 aa6.54□□□□□ -1.36
HOXA1-201ENST00000343060 NBPF19A0A087WUL8 3843 aa6.54□□□□□ -1.36
HOXA1-201ENST00000343060 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.54□□□□□ -1.36
HOXA1-201ENST00000343060 PRO0255Q9UI72 69 aa6.54□□□□□ -1.36
HOXA1-201ENST00000343060 CSMD2Q7Z408 3487 aa6.53□□□□□ -1.36
HOXA1-201ENST00000343060 DEFB130BP0DP73 79 aa6.53□□□□□ -1.36
HOXA1-201ENST00000343060 DEFB130AP0DP74 79 aa6.53□□□□□ -1.36
HOXA1-201ENST00000343060 TM2D3Q9BRN9 247 aa6.53□□□□□ -1.36
HOXA1-201ENST00000343060 ANKRD17O75179 2603 aaKnown RBP6.53□□□□□ -1.36
HOXA1-201ENST00000343060 CHD6Q8TD26 2715 aa6.53□□□□□ -1.36
HOXA1-201ENST00000343060 WNK1Q9H4A3 2382 aa6.52□□□□□ -1.36
HOXA1-201ENST00000343060 NCOR2Q9Y618 2525 aa6.52□□□□□ -1.36
HOXA1-201ENST00000343060 GVQW2A0A096LPI5 108 aaPredicted RBP6.52□□□□□ -1.37
HOXA1-201ENST00000343060 REG3AQ06141 175 aa6.52□□□□□ -1.37
HOXA1-201ENST00000343060 C10orf25Q5T742 122 aa6.52□□□□□ -1.37
HOXA1-201ENST00000343060 LINC01006Q8NI28 216 aa6.52□□□□□ -1.37
HOXA1-201ENST00000343060 PIEZO1Q92508 2521 aa6.52□□□□□ -1.37
HOXA1-201ENST00000343060 DNAJC9-AS1A6NH13 148 aa6.52□□□□□ -1.37
HOXA1-201ENST00000343060 MIFP14174 115 aa6.52□□□□□ -1.37
HOXA1-201ENST00000343060 DIRC1Q969H9 104 aa6.52□□□□□ -1.37
HOXA1-201ENST00000343060 BBC3Q96PG8 261 aaPredicted RBP6.52□□□□□ -1.37
HOXA1-201ENST00000343060 USP9XQ93008 2570 aaPredicted RBP6.52□□□□□ -1.37
HOXA1-201ENST00000343060 SETXQ7Z333 2677 aaKnown RBP6.52□□□□□ -1.37
HOXA1-201ENST00000343060 TLN2Q9Y4G6 2542 aa6.51□□□□□ -1.37
HOXA1-201ENST00000343060 SPAG11BQ08648 103 aa6.51□□□□□ -1.37
HOXA1-201ENST00000343060 NREPQ16612 68 aa6.51□□□□□ -1.37
HOXA1-201ENST00000343060 UNQ6190/PRO20217Q6UXQ8 127 aa6.51□□□□□ -1.37
HOXA1-201ENST00000343060 JMJD1CQ15652 2540 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms