RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 VCX2Q9H322 139 aa12.55□□□□□ -0.4
SYNE2-201ENST00000341472 A0A087WZ39 114 aa12.54□□□□□ -0.4
SYNE2-201ENST00000341472 C9orf116Q5BN46 136 aaPredicted RBP12.54□□□□□ -0.4
SYNE2-201ENST00000341472 Q6ZN92 141 aa12.54□□□□□ -0.4
SYNE2-201ENST00000341472 NUPR1O60356 82 aa12.53□□□□□ -0.4
SYNE2-201ENST00000341472 UNQ6190/PRO20217Q6UXQ8 127 aa12.53□□□□□ -0.4
SYNE2-201ENST00000341472 C2orf88Q9BSF0 95 aa12.53□□□□□ -0.4
SYNE2-201ENST00000341472 NPSP0C0P6 89 aa12.52□□□□□ -0.41
SYNE2-201ENST00000341472 UBE2D1P51668 147 aa12.52□□□□□ -0.41
SYNE2-201ENST00000341472 C10orf25Q5T742 122 aa12.52□□□□□ -0.41
SYNE2-201ENST00000341472 PMCHL1Q16048 86 aa12.51□□□□□ -0.41
SYNE2-201ENST00000341472 ZC2HC1BQ5TFG8 222 aa12.51□□□□□ -0.41
SYNE2-201ENST00000341472 SPINK6Q6UWN8 80 aa12.51□□□□□ -0.41
SYNE2-201ENST00000341472 ERASQ7Z444 233 aa12.51□□□□□ -0.41
SYNE2-201ENST00000341472 FAM19A2Q8N3H0 131 aa12.51□□□□□ -0.41
SYNE2-201ENST00000341472 SCGB3A1Q96QR1 104 aa12.51□□□□□ -0.41
SYNE2-201ENST00000341472 A0A096LNJ9 63 aa12.5□□□□□ -0.41
SYNE2-201ENST00000341472 IGIPA6NJ69 53 aa12.5□□□□□ -0.41
SYNE2-201ENST00000341472 KIAA0087Q14695 138 aa12.5□□□□□ -0.41
SYNE2-201ENST00000341472 LINC01561Q8N1V8 128 aa12.5□□□□□ -0.41
SYNE2-201ENST00000341472 AMELXQ99217 191 aa12.5□□□□□ -0.41
SYNE2-201ENST00000341472 PLA2G2DQ9UNK4 145 aa12.5□□□□□ -0.41
SYNE2-201ENST00000341472 ATP5LO75964 103 aa12.49□□□□□ -0.41
SYNE2-201ENST00000341472 SRSF9Q13242 221 aaKnown RBP eCLIP12.49□□□□□ -0.41
SYNE2-201ENST00000341472 PDZD11Q5EBL8 140 aa12.49□□□□□ -0.41
SYNE2-201ENST00000341472 PAPPA-AS1Q5QFB9 102 aa12.49□□□□□ -0.41
SYNE2-201ENST00000341472 PACRGQ96M98 296 aaPredicted RBP12.49□□□□□ -0.41
SYNE2-201ENST00000341472 TIMM17AQ99595 171 aa12.49□□□□□ -0.41
SYNE2-201ENST00000341472 C6orf48Q9UBA6 75 aa12.49□□□□□ -0.41
SYNE2-201ENST00000341472 TLX1NBP0CAT3 122 aa12.48□□□□□ -0.41
SYNE2-201ENST00000341472 HSPB8Q9UJY1 196 aa12.48□□□□□ -0.41
SYNE2-201ENST00000341472 TMA7Q9Y2S6 64 aaKnown RBP12.48□□□□□ -0.41
SYNE2-201ENST00000341472 C5orf52A6NGY3 159 aa12.47□□□□□ -0.41
SYNE2-201ENST00000341472 LEPROTL1O95214 131 aa12.47□□□□□ -0.41
SYNE2-201ENST00000341472 S100A2P29034 98 aa12.47□□□□□ -0.41
SYNE2-201ENST00000341472 SNRPEP62304 92 aaKnown RBP12.47□□□□□ -0.41
SYNE2-201ENST00000341472 LINC00173Q6ZV60 143 aa12.47□□□□□ -0.41
SYNE2-201ENST00000341472 LINC01600Q96MT4 127 aa12.47□□□□□ -0.41
SYNE2-201ENST00000341472 REG3GQ6UW15 175 aa12.46□□□□□ -0.41
SYNE2-201ENST00000341472 PHF5AQ7RTV0 110 aaKnown RBP12.46□□□□□ -0.41
SYNE2-201ENST00000341472 GAGE2EQ4V326 116 aa12.45□□□□□ -0.42
SYNE2-201ENST00000341472 HIST3H2BBQ8N257 126 aa12.45□□□□□ -0.42
SYNE2-201ENST00000341472 GAGE2DQ9UEU5 116 aa12.45□□□□□ -0.42
SYNE2-201ENST00000341472 TRBV30A0A0K0K1B3 111 aa12.44□□□□□ -0.42
SYNE2-201ENST00000341472 C2orf82Q6UX34 121 aa12.44□□□□□ -0.42
SYNE2-201ENST00000341472 PSORS1C2Q9UIG4 136 aa12.44□□□□□ -0.42
SYNE2-201ENST00000341472 PRSS2P07478 247 aa12.43□□□□□ -0.42
SYNE2-201ENST00000341472 FABP4P15090 132 aa12.43□□□□□ -0.42
SYNE2-201ENST00000341472 SEC11AP67812 179 aa12.43□□□□□ -0.42
SYNE2-201ENST00000341472 FAM19A3Q7Z5A8 133 aa12.43□□□□□ -0.42
SYNE2-201ENST00000341472 IFI27L1Q96BM0 104 aa12.43□□□□□ -0.42
SYNE2-201ENST00000341472 TNXBP22105 4242 aa12.42□□□□□ -0.42
SYNE2-201ENST00000341472 C6orf226Q5I0X4 101 aa12.42□□□□□ -0.42
SYNE2-201ENST00000341472 FAM168BA1KXE4 195 aa12.41□□□□□ -0.42
SYNE2-201ENST00000341472 HERVK_113P63121 156 aa12.41□□□□□ -0.42
SYNE2-201ENST00000341472 GEMIN7Q9H840 131 aaKnown RBP12.41□□□□□ -0.42
SYNE2-201ENST00000341472 TOMM7Q9P0U1 55 aa12.41□□□□□ -0.42
SYNE2-201ENST00000341472 CKS1BP61024 79 aa12.4□□□□□ -0.42
SYNE2-201ENST00000341472 C1orf137Q5JT78 98 aa12.4□□□□□ -0.42
SYNE2-201ENST00000341472 MAP1LC3CQ9BXW4 147 aa12.4□□□□□ -0.42
SYNE2-201ENST00000341472 NDUFC2-KCTD14E9PQ53 114 aa12.39□□□□□ -0.43
SYNE2-201ENST00000341472 PMVKQ15126 192 aa12.39□□□□□ -0.43
SYNE2-201ENST00000341472 HIST1H2BLQ99880 126 aa12.39□□□□□ -0.43
SYNE2-201ENST00000341472 CDKN2A-AS1Q9UH64 79 aa12.39□□□□□ -0.43
SYNE2-201ENST00000341472 KRTAP10-8P60410 259 aa12.38□□□□□ -0.43
SYNE2-201ENST00000341472 FAM19A5Q7Z5A7 132 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-201ENST00000341472 Q8IZM0 81 aa12.37□□□□□ -0.43
SYNE2-201ENST00000341472 CST9LQ9H4G1 147 aa12.37□□□□□ -0.43
SYNE2-201ENST00000341472 TRAV12-1A0A0B4J245 112 aa12.36□□□□□ -0.43
SYNE2-201ENST00000341472 KRTAP7-1Q8IUC3 87 aa12.34□□□□□ -0.43
SYNE2-201ENST00000341472 UBR4Q5T4S7 5183 aa12.34□□□□□ -0.43
SYNE2-201ENST00000341472 SYS1-DBNDD2H3BUS1 97 aa12.33□□□□□ -0.44
SYNE2-201ENST00000341472 IGLV7-43P04211 117 aa12.33□□□□□ -0.44
SYNE2-201ENST00000341472 C9orf129Q5T035 196 aaKnown RBP12.33□□□□□ -0.44
SYNE2-201ENST00000341472 PET117Q6UWS5 81 aa12.33□□□□□ -0.44
SYNE2-201ENST00000341472 KRTAP11-1Q8IUC1 163 aa12.33□□□□□ -0.44
SYNE2-201ENST00000341472 LINC00469Q8N7U9 141 aa12.33□□□□□ -0.44
SYNE2-201ENST00000341472 TINCRA0A1B0GVN0 87 aa12.32□□□□□ -0.44
SYNE2-201ENST00000341472 M0QXV9 152 aa12.32□□□□□ -0.44
SYNE2-201ENST00000341472 C3orf79P0CE67 100 aa12.32□□□□□ -0.44
SYNE2-201ENST00000341472 KRTDAPP60985 99 aa12.32□□□□□ -0.44
SYNE2-201ENST00000341472 F8VRH5 84 aa12.31□□□□□ -0.44
SYNE2-201ENST00000341472 UBE2BP63146 152 aa12.31□□□□□ -0.44
SYNE2-201ENST00000341472 DIRC1Q969H9 104 aa12.31□□□□□ -0.44
SYNE2-201ENST00000341472 CHTOPQ9Y3Y2 248 aaKnown RBP12.31□□□□□ -0.44
SYNE2-201ENST00000341472 H0Y8G0 127 aa12.3□□□□□ -0.44
SYNE2-201ENST00000341472 ODF1Q14990 250 aa12.29□□□□□ -0.44
SYNE2-201ENST00000341472 C20orf202A1L168 122 aa12.28□□□□□ -0.44
SYNE2-201ENST00000341472 CXCL5P42830 114 aa12.28□□□□□ -0.44
SYNE2-201ENST00000341472 AKR1D1P51857 326 aa12.28□□□□□ -0.44
SYNE2-201ENST00000341472 IGLV5-45A0A087WSX0 123 aa12.27□□□□□ -0.45
SYNE2-201ENST00000341472 SMIM1B2RUZ4 78 aa12.27□□□□□ -0.45
SYNE2-201ENST00000341472 XAGE1AQ9HD64 81 aa12.27□□□□□ -0.45
SYNE2-201ENST00000341472 IGLC3P0DOY3 106 aa12.26□□□□□ -0.45
SYNE2-201ENST00000341472 LINC01545Q5VT33 79 aa12.26□□□□□ -0.45
SYNE2-201ENST00000341472 COX7B2Q8TF08 81 aa12.26□□□□□ -0.45
SYNE2-201ENST00000341472 C22orf24Q9Y442 160 aa12.26□□□□□ -0.45
SYNE2-201ENST00000341472 DPM2O94777 84 aa12.25□□□□□ -0.45
SYNE2-201ENST00000341472 PLNP26678 52 aa12.25□□□□□ -0.45
SYNE2-201ENST00000341472 LBHQ53QV2 105 aaPredicted RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms