RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 Q6ZS46 218 aa10.15□□□□□ -0.79
CCDC88A-201ENST00000263630 C6orf48Q9UBA6 75 aa10.15□□□□□ -0.79
CCDC88A-201ENST00000263630 C6orf223Q8N319 242 aa10.15□□□□□ -0.79
CCDC88A-201ENST00000263630 INAFM1C9JVW0 142 aa10.14□□□□□ -0.79
CCDC88A-201ENST00000263630 A0A087WYN8 130 aa10.14□□□□□ -0.79
CCDC88A-201ENST00000263630 PSMG3-AS1Q96PY0 264 aa10.13□□□□□ -0.79
CCDC88A-201ENST00000263630 C11orf1Q9H5F2 150 aa10.13□□□□□ -0.79
CCDC88A-201ENST00000263630 KLLNB2CW77 178 aa10.12□□□□□ -0.79
CCDC88A-201ENST00000263630 A0A087WVE0 104 aa10.12□□□□□ -0.79
CCDC88A-201ENST00000263630 POLR2KP53803 58 aaKnown RBP10.11□□□□□ -0.79
CCDC88A-201ENST00000263630 UNQ6190/PRO20217Q6UXQ8 127 aa10.11□□□□□ -0.79
CCDC88A-201ENST00000263630 Q8N2B8 174 aa10.11□□□□□ -0.79
CCDC88A-201ENST00000263630 LMO4P61968 165 aa10.1□□□□□ -0.79
CCDC88A-201ENST00000263630 H3BPC8 53 aa10.09□□□□□ -0.79
CCDC88A-201ENST00000263630 CRIP2P52943 208 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-201ENST00000263630 Q6ZSV7 163 aa10.08□□□□□ -0.8
CCDC88A-201ENST00000263630 CNFNQ9BYD5 112 aa10.08□□□□□ -0.8
CCDC88A-201ENST00000263630 A0A1B0GW54 56 aa10.07□□□□□ -0.8
CCDC88A-201ENST00000263630 PRM2P04554 102 aa10.07□□□□□ -0.8
CCDC88A-201ENST00000263630 DEFB116Q30KQ4 102 aa10.07□□□□□ -0.8
CCDC88A-201ENST00000263630 SSBP3-AS1Q7Z2R9 100 aa10.07□□□□□ -0.8
CCDC88A-201ENST00000263630 LINC01561Q8N1V8 128 aa10.07□□□□□ -0.8
CCDC88A-201ENST00000263630 CRIPTQ9P021 101 aa10.06□□□□□ -0.8
CCDC88A-201ENST00000263630 SMIM1B2RUZ4 78 aa10.06□□□□□ -0.8
CCDC88A-201ENST00000263630 IGIPA6NJ69 53 aa10.06□□□□□ -0.8
CCDC88A-201ENST00000263630 IGLV2-11P01706 119 aa10.05□□□□□ -0.8
CCDC88A-201ENST00000263630 F8P00451 2351 aa10.05□□□□□ -0.8
CCDC88A-201ENST00000263630 LINC00242Q5T6M2 205 aa10.05□□□□□ -0.8
CCDC88A-201ENST00000263630 C9orf116Q5BN46 136 aaPredicted RBP10.05□□□□□ -0.8
CCDC88A-201ENST00000263630 BCE1O60756 84 aa10.05□□□□□ -0.8
CCDC88A-201ENST00000263630 RPS28P62857 69 aaKnown RBP10.04□□□□□ -0.8
CCDC88A-201ENST00000263630 C1orf134Q5TEV5 83 aa10.04□□□□□ -0.8
CCDC88A-201ENST00000263630 ACANP16112 2415 aa10.03□□□□□ -0.8
CCDC88A-201ENST00000263630 TRAV22A0A0B4J277 110 aa10.03□□□□□ -0.8
CCDC88A-201ENST00000263630 NOTCH2Q04721 2471 aa10.03□□□□□ -0.8
CCDC88A-201ENST00000263630 PRR3P79522 188 aaKnown RBP10.02□□□□□ -0.81
CCDC88A-201ENST00000263630 Q9UF83 564 aa10.01□□□□□ -0.81
CCDC88A-201ENST00000263630 A0A1B0GUV1 79 aa10.01□□□□□ -0.81
CCDC88A-201ENST00000263630 SMIM29Q86T20 159 aa10.01□□□□□ -0.81
CCDC88A-201ENST00000263630 COX6A2Q02221 97 aa10□□□□□ -0.81
CCDC88A-201ENST00000263630 LINC00313P59037 77 aa9.99□□□□□ -0.81
CCDC88A-201ENST00000263630 LY6G6DO95868 133 aa9.99□□□□□ -0.81
CCDC88A-201ENST00000263630 BDP1A6H8Y1 2624 aa9.99□□□□□ -0.81
CCDC88A-201ENST00000263630 ZFYVE26Q68DK2 2539 aa9.98□□□□□ -0.81
CCDC88A-201ENST00000263630 LINC00846Q9NV44 126 aa9.98□□□□□ -0.81
CCDC88A-201ENST00000263630 LINC01006Q8NI28 216 aa9.97□□□□□ -0.81
CCDC88A-201ENST00000263630 SPACA4Q8TDM5 124 aa9.96□□□□□ -0.82
CCDC88A-201ENST00000263630 IGLV8-61A0A075B6I0 122 aa9.96□□□□□ -0.82
CCDC88A-201ENST00000263630 PRR9Q5T870 116 aa9.95□□□□□ -0.82
CCDC88A-201ENST00000263630 EDN2P20800 178 aa9.94□□□□□ -0.82
CCDC88A-201ENST00000263630 AMELXQ99217 191 aa9.94□□□□□ -0.82
CCDC88A-201ENST00000263630 IGLV1-40P01703 118 aa9.94□□□□□ -0.82
CCDC88A-201ENST00000263630 CYP4F30PQ9H0H9 118 aa9.93□□□□□ -0.82
CCDC88A-201ENST00000263630 SMCR5Q8TEV8 140 aa9.93□□□□□ -0.82
CCDC88A-201ENST00000263630 ZFHX2Q9C0A1 2572 aaPredicted RBP9.92□□□□□ -0.82
CCDC88A-201ENST00000263630 MOBPQ13875 183 aa9.92□□□□□ -0.82
CCDC88A-201ENST00000263630 C4orf26Q17RF5 130 aa9.92□□□□□ -0.82
CCDC88A-201ENST00000263630 ADAMTSL4-AS1Q5T5F5 129 aa9.92□□□□□ -0.82
CCDC88A-201ENST00000263630 LUZP6Q538Z0 58 aa9.92□□□□□ -0.82
CCDC88A-201ENST00000263630 UQCR11O14957 56 aa9.92□□□□□ -0.82
CCDC88A-201ENST00000263630 NHLRC4P0CG21 123 aaPredicted RBP9.9□□□□□ -0.82
CCDC88A-201ENST00000263630 Q8NA96 180 aa9.9□□□□□ -0.82
CCDC88A-201ENST00000263630 IGLV4-60A0A075B6I1 120 aa9.9□□□□□ -0.82
CCDC88A-201ENST00000263630 FHL2Q14192 279 aa9.9□□□□□ -0.83
CCDC88A-201ENST00000263630 KIAA0087Q14695 138 aa9.89□□□□□ -0.83
CCDC88A-201ENST00000263630 C10orf99Q6UWK7 81 aa9.89□□□□□ -0.83
CCDC88A-201ENST00000263630 BRWD1-AS2P59051 145 aa9.89□□□□□ -0.83
CCDC88A-201ENST00000263630 C11orf71Q6IPW1 123 aa9.89□□□□□ -0.83
CCDC88A-201ENST00000263630 LINC01600Q96MT4 127 aa9.89□□□□□ -0.83
CCDC88A-201ENST00000263630 C11orf21Q9P2W6 132 aa9.89□□□□□ -0.83
CCDC88A-201ENST00000263630 C22orf24Q9Y442 160 aa9.89□□□□□ -0.83
CCDC88A-201ENST00000263630 COL27A1Q8IZC6 1860 aaPredicted RBP9.88□□□□□ -0.83
CCDC88A-201ENST00000263630 LOC101927531A0A1B0GV80 90 aa9.88□□□□□ -0.83
CCDC88A-201ENST00000263630 ZNF295-AS1Q8N0V1 137 aa9.88□□□□□ -0.83
CCDC88A-201ENST00000263630 LTBP2Q14767 1821 aa9.87□□□□□ -0.83
CCDC88A-201ENST00000263630 C11orf72Q8NBR9 251 aa9.87□□□□□ -0.83
CCDC88A-201ENST00000263630 C18orf65Q6ZTR6 163 aa9.87□□□□□ -0.83
CCDC88A-201ENST00000263630 FAM229AH3BQW9 127 aa9.87□□□□□ -0.83
CCDC88A-201ENST00000263630 OXLD1Q5BKU9 147 aa9.87□□□□□ -0.83
CCDC88A-201ENST00000263630 FN1P02751 2386 aaKnown RBP9.87□□□□□ -0.83
CCDC88A-201ENST00000263630 SPATA3Q8NHX4 192 aa9.86□□□□□ -0.83
CCDC88A-201ENST00000263630 TSPEAR-AS2P59090 65 aa9.85□□□□□ -0.83
CCDC88A-201ENST00000263630 LINC01554Q52M75 96 aa9.85□□□□□ -0.83
CCDC88A-201ENST00000263630 A8MTW9 85 aa9.85□□□□□ -0.83
CCDC88A-201ENST00000263630 LYPD5Q6UWN5 251 aa9.85□□□□□ -0.83
CCDC88A-201ENST00000263630 EPM2AB3EWF7 344 aa9.84□□□□□ -0.83
CCDC88A-201ENST00000263630 PLA2G5P39877 138 aa9.84□□□□□ -0.83
CCDC88A-201ENST00000263630 FLG2Q5D862 2391 aaPredicted RBP9.84□□□□□ -0.83
CCDC88A-201ENST00000263630 APLNQ9ULZ1 77 aa9.84□□□□□ -0.83
CCDC88A-201ENST00000263630 MDFIQ99750 246 aa9.84□□□□□ -0.83
CCDC88A-201ENST00000263630 GAS8-AS1O95177 125 aa9.84□□□□□ -0.83
CCDC88A-201ENST00000263630 IGLV1-51P01701 117 aa9.83□□□□□ -0.84
CCDC88A-201ENST00000263630 Q6ZRU5 148 aa9.83□□□□□ -0.84
CCDC88A-201ENST00000263630 C19orf84I3L1E1 186 aa9.83□□□□□ -0.84
CCDC88A-201ENST00000263630 Q8NBF4 154 aa9.83□□□□□ -0.84
CCDC88A-201ENST00000263630 TYMSOSQ8TAI1 123 aa9.83□□□□□ -0.84
CCDC88A-201ENST00000263630 C1orf229Q6ZS94 237 aaPredicted RBP9.82□□□□□ -0.84
CCDC88A-201ENST00000263630 TLN2Q9Y4G6 2542 aa9.81□□□□□ -0.84
CCDC88A-201ENST00000263630 COL4A4P53420 1690 aaPredicted RBP9.8□□□□□ -0.84
CCDC88A-201ENST00000263630 LOC110117498A0A087WWA1 95 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms