RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 LRRC37AA6NMS7 1700 aa2.12□□□□□ -2.07
CCDC54-201ENST00000261058 A0A1W2PNM2 257 aa2.12□□□□□ -2.07
CCDC54-201ENST00000261058 SPTBP11277 2137 aa2.12□□□□□ -2.07
CCDC54-201ENST00000261058 COX6B1P14854 86 aa2.12□□□□□ -2.07
CCDC54-201ENST00000261058 DEFB113Q30KQ7 82 aa2.12□□□□□ -2.07
CCDC54-201ENST00000261058 MYO7BQ6PIF6 2116 aa2.12□□□□□ -2.07
CCDC54-201ENST00000261058 ENHOQ6UWT2 76 aa2.12□□□□□ -2.07
CCDC54-201ENST00000261058 DMAC1Q96GE9 116 aa2.12□□□□□ -2.07
CCDC54-201ENST00000261058 LINC01558Q9Y6Z2 57 aa2.12□□□□□ -2.07
CCDC54-201ENST00000261058 R4GN34 69 aa2.12□□□□□ -2.07
CCDC54-201ENST00000261058 DOT1LQ8TEK3 1739 aa2.12□□□□□ -2.07
CCDC54-201ENST00000261058 CLPSL1A2RUU4 121 aa2.11□□□□□ -2.07
CCDC54-201ENST00000261058 F8VRH5 84 aa2.11□□□□□ -2.07
CCDC54-201ENST00000261058 CNBPP62633 177 aaKnown RBP2.11□□□□□ -2.07
CCDC54-201ENST00000261058 KRTAP26-1Q6PEX3 210 aa2.11□□□□□ -2.07
CCDC54-201ENST00000261058 FDCSPQ8NFU4 85 aa2.11□□□□□ -2.07
CCDC54-201ENST00000261058 TMEM167BQ9NRX6 74 aa2.11□□□□□ -2.07
CCDC54-201ENST00000261058 MRPL36Q9P0J6 103 aaKnown RBP2.11□□□□□ -2.07
CCDC54-201ENST00000261058 TMEM14CQ9P0S9 112 aa2.11□□□□□ -2.07
CCDC54-201ENST00000261058 TIMM8BQ9Y5J9 83 aaPredicted RBP2.11□□□□□ -2.07
CCDC54-201ENST00000261058 C4AP0C0L4 1744 aa2.11□□□□□ -2.07
CCDC54-201ENST00000261058 C4BP0C0L5 1744 aa2.11□□□□□ -2.07
CCDC54-201ENST00000261058 NRAPQ86VF7 1730 aa2.11□□□□□ -2.07
CCDC54-201ENST00000261058 MDC1Q14676 2089 aaKnown RBP2.11□□□□□ -2.07
CCDC54-201ENST00000261058 HEATR5BQ9P2D3 2071 aa2.11□□□□□ -2.07
CCDC54-201ENST00000261058 JMJD7-PLA2G4BH0Y9G9 81 aa2.1□□□□□ -2.07
CCDC54-201ENST00000261058 FXYD3Q14802 87 aa2.1□□□□□ -2.07
CCDC54-201ENST00000261058 PRO2289Q9P1D8 64 aa2.1□□□□□ -2.07
CCDC54-201ENST00000261058 BCORQ6W2J9 1755 aa2.1□□□□□ -2.07
CCDC54-201ENST00000261058 LRRC37A3O60309 1634 aa2.1□□□□□ -2.07
CCDC54-201ENST00000261058 LCE6AA0A183 80 aa2.09□□□□□ -2.07
CCDC54-201ENST00000261058 IGIPA6NJ69 53 aa2.09□□□□□ -2.07
CCDC54-201ENST00000261058 I3L3M4 83 aa2.09□□□□□ -2.07
CCDC54-201ENST00000261058 ERHP84090 104 aaKnown RBP2.09□□□□□ -2.07
CCDC54-201ENST00000261058 COX7B2Q8TF08 81 aa2.09□□□□□ -2.07
CCDC54-201ENST00000261058 PLAC8Q9NZF1 115 aa2.09□□□□□ -2.07
CCDC54-201ENST00000261058 R4GMQ9 66 aa2.09□□□□□ -2.07
CCDC54-201ENST00000261058 COL5A1P20908 1838 aaPredicted RBP2.09□□□□□ -2.08
CCDC54-201ENST00000261058 TRAV21A0A0B4J279 112 aa2.08□□□□□ -2.08
CCDC54-201ENST00000261058 IGKV2-24A0A0C4DH68 120 aa2.08□□□□□ -2.08
CCDC54-201ENST00000261058 NUPR2A6NF83 97 aa2.08□□□□□ -2.08
CCDC54-201ENST00000261058 M0R135 149 aa2.08□□□□□ -2.08
CCDC54-201ENST00000261058 M0R1W7 72 aa2.08□□□□□ -2.08
CCDC54-201ENST00000261058 M0R3E3 92 aa2.08□□□□□ -2.08
CCDC54-201ENST00000261058 IGKV4-1P06312 121 aa2.08□□□□□ -2.08
CCDC54-201ENST00000261058 C9orf163Q8N9P6 203 aa2.08□□□□□ -2.08
CCDC54-201ENST00000261058 LINC00208Q96KT6 92 aa2.08□□□□□ -2.08
CCDC54-201ENST00000261058 COL4A1P02462 1669 aa2.08□□□□□ -2.08
CCDC54-201ENST00000261058 COL4A5P29400 1685 aa2.08□□□□□ -2.08
CCDC54-201ENST00000261058 TRBV6-1A0A0K0K1D8 114 aa2.08□□□□□ -2.08
CCDC54-201ENST00000261058 A0A1W2PNN7 141 aa2.08□□□□□ -2.08
CCDC54-201ENST00000261058 IL9P15248 144 aa2.08□□□□□ -2.08
CCDC54-201ENST00000261058 PDE6HQ13956 83 aa2.08□□□□□ -2.08
CCDC54-201ENST00000261058 Q6ZTI0 123 aa2.08□□□□□ -2.08
CCDC54-201ENST00000261058 TTTY12Q9BZ98 90 aa2.08□□□□□ -2.08
CCDC54-201ENST00000261058 PI4KAP42356 2102 aa2.07□□□□□ -2.08
CCDC54-201ENST00000261058 ZGRF1Q86YA3 2104 aa2.07□□□□□ -2.08
CCDC54-201ENST00000261058 KIAA0100Q14667 2235 aaKnown RBP2.07□□□□□ -2.08
CCDC54-201ENST00000261058 UQCR11O14957 56 aa2.07□□□□□ -2.08
CCDC54-201ENST00000261058 NDUFA3O95167 84 aa2.07□□□□□ -2.08
CCDC54-201ENST00000261058 ARL14EPLP0DKL9 152 aa2.07□□□□□ -2.08
CCDC54-201ENST00000261058 HRES1P13985 223 aa2.07□□□□□ -2.08
CCDC54-201ENST00000261058 PDE6GP18545 87 aa2.07□□□□□ -2.08
CCDC54-201ENST00000261058 C10orf113Q5VZT2 155 aa2.07□□□□□ -2.08
CCDC54-201ENST00000261058 BRD3OSQ6XYD6 125 aa2.07□□□□□ -2.08
CCDC54-201ENST00000261058 WFDC9Q8NEX5 89 aa2.07□□□□□ -2.08
CCDC54-201ENST00000261058 C4orf3Q8WVX3 66 aa2.07□□□□□ -2.08
CCDC54-201ENST00000261058 ZCCHC13Q8WW36 166 aaKnown RBP2.07□□□□□ -2.08
CCDC54-201ENST00000261058 INTS1Q8N201 2190 aaKnown RBP2.07□□□□□ -2.08
CCDC54-201ENST00000261058 IGKV3-7A0A075B6H7 116 aa2.06□□□□□ -2.08
CCDC54-201ENST00000261058 H0Y9P7 68 aa2.06□□□□□ -2.08
CCDC54-201ENST00000261058 H0YGX0 51 aa2.06□□□□□ -2.08
CCDC54-201ENST00000261058 MGPP08493 103 aa2.06□□□□□ -2.08
CCDC54-201ENST00000261058 CCL3L1P16619 93 aa2.06□□□□□ -2.08
CCDC54-201ENST00000261058 RPL38P63173 70 aaKnown RBP2.06□□□□□ -2.08
CCDC54-201ENST00000261058 TET1Q8NFU7 2136 aa2.06□□□□□ -2.08
CCDC54-201ENST00000261058 RP1P56715 2156 aa2.05□□□□□ -2.08
CCDC54-201ENST00000261058 TNRC6BQ9UPQ9 1833 aaKnown RBP2.05□□□□□ -2.08
CCDC54-201ENST00000261058 ZNF831Q5JPB2 1677 aa2.05□□□□□ -2.08
CCDC54-201ENST00000261058 CTSGP08311 255 aa2.05□□□□□ -2.08
CCDC54-201ENST00000261058 ZNF137PP52743 207 aa2.05□□□□□ -2.08
CCDC54-201ENST00000261058 CCL18P55774 89 aa2.05□□□□□ -2.08
CCDC54-201ENST00000261058 RPS27LQ71UM5 84 aaKnown RBP2.05□□□□□ -2.08
CCDC54-201ENST00000261058 WFDC10AQ9H1F0 79 aa2.05□□□□□ -2.08
CCDC54-201ENST00000261058 CCL26Q9Y258 94 aa2.05□□□□□ -2.08
CCDC54-201ENST00000261058 NRXN2Q9P2S2 1712 aa2.04□□□□□ -2.08
CCDC54-201ENST00000261058 DEFB114Q30KQ6 69 aa2.04□□□□□ -2.08
CCDC54-201ENST00000261058 KRTAP6-3Q3LI67 103 aa2.04□□□□□ -2.08
CCDC54-201ENST00000261058 SPATA8Q6RVD6 105 aa2.04□□□□□ -2.08
CCDC54-201ENST00000261058 PLXNB2O15031 1838 aa2.04□□□□□ -2.08
CCDC54-201ENST00000261058 CR1P17927 2039 aa2.03□□□□□ -2.08
CCDC54-201ENST00000261058 IGLV6-57P01721 117 aa2.03□□□□□ -2.08
CCDC54-201ENST00000261058 SPINK7P58062 85 aa2.03□□□□□ -2.08
CCDC54-201ENST00000261058 LINC00322Q6ZN03 302 aaPredicted RBP2.03□□□□□ -2.08
CCDC54-201ENST00000261058 SPRR4Q96PI1 79 aa2.03□□□□□ -2.08
CCDC54-201ENST00000261058 GAFA1Q96PS6 74 aa2.03□□□□□ -2.08
CCDC54-201ENST00000261058 KLK9Q9UKQ9 250 aa2.03□□□□□ -2.08
CCDC54-201ENST00000261058 DNAJC13O75165 2243 aa2.03□□□□□ -2.09
CCDC54-201ENST00000261058 LOC110117498A0A087WWA1 95 aa2.02□□□□□ -2.09
CCDC54-201ENST00000261058 DEFB134Q4QY38 66 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms