RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 HRCT1Q6UXD1 115 aa13.44□□□□□ -0.26
PTPRE-201ENST00000254667 NHLRC4P0CG21 123 aaPredicted RBP13.44□□□□□ -0.26
PTPRE-201ENST00000254667 JMJD1CQ15652 2540 aa13.43□□□□□ -0.26
PTPRE-201ENST00000254667 ABCA12Q86UK0 2595 aa13.42□□□□□ -0.26
PTPRE-201ENST00000254667 IGLV5-52A0A0A0MRZ9 124 aa13.42□□□□□ -0.26
PTPRE-201ENST00000254667 KIF25-AS1Q9Y6Z4 181 aa13.42□□□□□ -0.26
PTPRE-201ENST00000254667 ADAMTSL4-AS1Q5T5F5 129 aa13.41□□□□□ -0.26
PTPRE-201ENST00000254667 MRPL55Q7Z7F7 128 aaKnown RBP13.41□□□□□ -0.26
PTPRE-201ENST00000254667 C1orf137Q5JT78 98 aa13.41□□□□□ -0.26
PTPRE-201ENST00000254667 C11orf72Q8NBR9 251 aa13.41□□□□□ -0.26
PTPRE-201ENST00000254667 CEP295Q9C0D2 2601 aa13.4□□□□□ -0.26
PTPRE-201ENST00000254667 USP9XQ93008 2570 aaPredicted RBP13.4□□□□□ -0.26
PTPRE-201ENST00000254667 ANKRD11Q6UB99 2663 aaPredicted RBP13.4□□□□□ -0.26
PTPRE-201ENST00000254667 PRYO14603 147 aa13.39□□□□□ -0.27
PTPRE-201ENST00000254667 V9GYY9 64 aa13.39□□□□□ -0.27
PTPRE-201ENST00000254667 FHL3Q13643 280 aa13.37□□□□□ -0.27
PTPRE-201ENST00000254667 PRR15LQ9BU68 103 aa13.37□□□□□ -0.27
PTPRE-201ENST00000254667 COX7CP15954 63 aa13.36□□□□□ -0.27
PTPRE-201ENST00000254667 FAM19A4Q96LR4 140 aa13.36□□□□□ -0.27
PTPRE-201ENST00000254667 Q8N9L7 120 aa13.36□□□□□ -0.27
PTPRE-201ENST00000254667 PRR3P79522 188 aaKnown RBP13.36□□□□□ -0.27
PTPRE-201ENST00000254667 C1orf134Q5TEV5 83 aa13.36□□□□□ -0.27
PTPRE-201ENST00000254667 Q6Q795 121 aa13.36□□□□□ -0.27
PTPRE-201ENST00000254667 XGP55808 180 aa13.36□□□□□ -0.27
PTPRE-201ENST00000254667 A0A087WYN8 130 aa13.35□□□□□ -0.27
PTPRE-201ENST00000254667 BRK1Q8WUW1 75 aa13.35□□□□□ -0.27
PTPRE-201ENST00000254667 ZFYVE26Q68DK2 2539 aa13.34□□□□□ -0.27
PTPRE-201ENST00000254667 COL4A2P08572 1712 aa13.34□□□□□ -0.27
PTPRE-201ENST00000254667 LINC01546A6NGU7 62 aa13.34□□□□□ -0.27
PTPRE-201ENST00000254667 DOPEY1Q5JWR5 2465 aa13.34□□□□□ -0.27
PTPRE-201ENST00000254667 K7ERS5 55 aa13.33□□□□□ -0.27
PTPRE-201ENST00000254667 TLN2Q9Y4G6 2542 aa13.32□□□□□ -0.28
PTPRE-201ENST00000254667 MPLKIPQ8TAP9 179 aa13.32□□□□□ -0.28
PTPRE-201ENST00000254667 SNURFQ9Y675 71 aa13.31□□□□□ -0.28
PTPRE-201ENST00000254667 WDR87Q6ZQQ6 2873 aa13.31□□□□□ -0.28
PTPRE-201ENST00000254667 Q6ZRU5 148 aa13.29□□□□□ -0.28
PTPRE-201ENST00000254667 IGLV5-39A0A0G2JS06 123 aa13.29□□□□□ -0.28
PTPRE-201ENST00000254667 LINC01556Q5JQF7 62 aa13.29□□□□□ -0.28
PTPRE-201ENST00000254667 LRRK2Q5S007 2527 aa13.29□□□□□ -0.28
PTPRE-201ENST00000254667 Q9BRP9 147 aa13.28□□□□□ -0.28
PTPRE-201ENST00000254667 CELA1Q9UNI1 258 aa13.28□□□□□ -0.28
PTPRE-201ENST00000254667 LINC00315P59091 139 aa13.28□□□□□ -0.28
PTPRE-201ENST00000254667 TRAV7A0A075B6U4 112 aa13.27□□□□□ -0.29
PTPRE-201ENST00000254667 LINC00575Q6W349 94 aa13.27□□□□□ -0.29
PTPRE-201ENST00000254667 FN1P02751 2386 aaKnown RBP13.27□□□□□ -0.29
PTPRE-201ENST00000254667 CIRBP-AS1Q8TBR5 109 aa13.27□□□□□ -0.29
PTPRE-201ENST00000254667 FAM30AQ9NZY2 134 aa13.27□□□□□ -0.29
PTPRE-201ENST00000254667 H3BNG1 76 aa13.26□□□□□ -0.29
PTPRE-201ENST00000254667 USP9YO00507 2555 aaPredicted RBP13.26□□□□□ -0.29
PTPRE-201ENST00000254667 SPTSSBQ8NFR3 76 aa13.25□□□□□ -0.29
PTPRE-201ENST00000254667 IGHV3OR16-9A0A0B4J2B5 98 aa13.24□□□□□ -0.29
PTPRE-201ENST00000254667 ESRGQ1W209 222 aa13.23□□□□□ -0.29
PTPRE-201ENST00000254667 SERP1Q9Y6X1 66 aa13.23□□□□□ -0.29
PTPRE-201ENST00000254667 AGRNO00468 2067 aa13.22□□□□□ -0.29
PTPRE-201ENST00000254667 KLK9Q2XQG4 91 aa13.21□□□□□ -0.29
PTPRE-201ENST00000254667 LINC00337Q8N6G1 96 aa13.21□□□□□ -0.3
PTPRE-201ENST00000254667 ZNF462Q96JM2 2506 aa13.19□□□□□ -0.3
PTPRE-201ENST00000254667 FSHBP01225 129 aa13.19□□□□□ -0.3
PTPRE-201ENST00000254667 C22orf24Q9Y442 160 aa13.19□□□□□ -0.3
PTPRE-201ENST00000254667 CCDC179H3BU77 68 aa13.19□□□□□ -0.3
PTPRE-201ENST00000254667 SVIPQ8NHG7 77 aa13.18□□□□□ -0.3
PTPRE-201ENST00000254667 X6R8D5 127 aa13.18□□□□□ -0.3
PTPRE-201ENST00000254667 A0A087WSZ3 146 aa13.18□□□□□ -0.3
PTPRE-201ENST00000254667 IGLV5-45A0A087WSX0 123 aa13.17□□□□□ -0.3
PTPRE-201ENST00000254667 IGHV6-1A0A0B4J1U7 121 aa13.17□□□□□ -0.3
PTPRE-201ENST00000254667 PRR4Q16378 134 aa13.17□□□□□ -0.3
PTPRE-201ENST00000254667 LINC00208Q96KT6 92 aa13.15□□□□□ -0.3
PTPRE-201ENST00000254667 MDFIQ99750 246 aa13.15□□□□□ -0.3
PTPRE-201ENST00000254667 CHD8Q9HCK8 2581 aa13.15□□□□□ -0.3
PTPRE-201ENST00000254667 Q8N3U1 123 aa13.15□□□□□ -0.31
PTPRE-201ENST00000254667 LINC01547P58512 204 aaPredicted RBP13.14□□□□□ -0.31
PTPRE-201ENST00000254667 Q6ZVQ6 151 aa13.14□□□□□ -0.31
PTPRE-201ENST00000254667 A0A087WVE0 104 aa13.13□□□□□ -0.31
PTPRE-201ENST00000254667 KRTAP24-1Q3LI83 254 aa13.13□□□□□ -0.31
PTPRE-201ENST00000254667 SPTBN4Q9H254 2564 aa13.13□□□□□ -0.31
PTPRE-201ENST00000254667 PTPRBP23467 1997 aa13.13□□□□□ -0.31
PTPRE-201ENST00000254667 SMCR5Q8TEV8 140 aa13.13□□□□□ -0.31
PTPRE-201ENST00000254667 LIMD2Q9BT23 127 aa13.12□□□□□ -0.31
PTPRE-201ENST00000254667 SRCAPQ6ZRS2 3230 aa13.12□□□□□ -0.31
PTPRE-201ENST00000254667 TET2Q6N021 2002 aaPredicted RBP13.12□□□□□ -0.31
PTPRE-201ENST00000254667 PRLHP81277 87 aa13.12□□□□□ -0.31
PTPRE-201ENST00000254667 SETD2Q9BYW2 2564 aaPredicted RBP13.11□□□□□ -0.31
PTPRE-201ENST00000254667 A8MTW9 85 aa13.1□□□□□ -0.31
PTPRE-201ENST00000254667 A6NED7 52 aa13.09□□□□□ -0.31
PTPRE-201ENST00000254667 SMIM26A0A096LP01 95 aa13.08□□□□□ -0.32
PTPRE-201ENST00000254667 C6orf48Q9UBA6 75 aa13.08□□□□□ -0.32
PTPRE-201ENST00000254667 TRBV7-6A0A0J9YX20 115 aa13.08□□□□□ -0.32
PTPRE-201ENST00000254667 SBSPONQ8IVN8 264 aa13.07□□□□□ -0.32
PTPRE-201ENST00000254667 LINC00846Q9NV44 126 aa13.06□□□□□ -0.32
PTPRE-201ENST00000254667 CXCL6P80162 114 aa13.06□□□□□ -0.32
PTPRE-201ENST00000254667 COL27A1Q8IZC6 1860 aaPredicted RBP13.06□□□□□ -0.32
PTPRE-201ENST00000254667 Q8NAQ8 132 aa13.05□□□□□ -0.32
PTPRE-201ENST00000254667 LINC00167Q96N53 147 aa13.05□□□□□ -0.32
PTPRE-201ENST00000254667 HCG22E2RYF7 251 aa13.04□□□□□ -0.32
PTPRE-201ENST00000254667 PKD1L2Q7Z442 2459 aa13.03□□□□□ -0.32
PTPRE-201ENST00000254667 KIAA0087Q14695 138 aa13.02□□□□□ -0.33
PTPRE-201ENST00000254667 A0A1B0GW54 56 aa13.01□□□□□ -0.33
PTPRE-201ENST00000254667 H0Y9P7 68 aa13.01□□□□□ -0.33
PTPRE-201ENST00000254667 TRBV7-7A0A0K0K1E9 115 aa12.99□□□□□ -0.33
PTPRE-201ENST00000254667 MTORP42345 2549 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms