RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 A0A087WVE0 104 aa6.06□□□□□ -1.44
PTCD3-201ENST00000254630 KIF25-AS1Q9Y6Z4 181 aa6.06□□□□□ -1.44
PTCD3-201ENST00000254630 SPTBN1Q01082 2364 aaKnown RBP6.06□□□□□ -1.44
PTCD3-201ENST00000254630 CADP27708 2225 aa6.06□□□□□ -1.44
PTCD3-201ENST00000254630 NCOR1O75376 2440 aa6.05□□□□□ -1.44
PTCD3-201ENST00000254630 PRR14LQ5THK1 2151 aa6.05□□□□□ -1.44
PTCD3-201ENST00000254630 H3BNG1 76 aa6.04□□□□□ -1.44
PTCD3-201ENST00000254630 KIAA0087Q14695 138 aa6.04□□□□□ -1.44
PTCD3-201ENST00000254630 KRTAP24-1Q3LI83 254 aa6.04□□□□□ -1.44
PTCD3-201ENST00000254630 LINC00337Q8N6G1 96 aa6.03□□□□□ -1.44
PTCD3-201ENST00000254630 IGLV5-39A0A0G2JS06 123 aa6.03□□□□□ -1.44
PTCD3-201ENST00000254630 TRBV7-7A0A0K0K1E9 115 aa6.03□□□□□ -1.44
PTCD3-201ENST00000254630 RTL8CO15255 209 aa6.03□□□□□ -1.44
PTCD3-201ENST00000254630 SPINK1P00995 79 aa6.03□□□□□ -1.44
PTCD3-201ENST00000254630 Q8N3U1 123 aa6.03□□□□□ -1.44
PTCD3-201ENST00000254630 C6orf48Q9UBA6 75 aa6.03□□□□□ -1.44
PTCD3-201ENST00000254630 SPTA1P02549 2419 aa6.02□□□□□ -1.45
PTCD3-201ENST00000254630 ABCA4P78363 2273 aa6.02□□□□□ -1.45
PTCD3-201ENST00000254630 MAP1BP46821 2468 aaKnown RBP6.02□□□□□ -1.45
PTCD3-201ENST00000254630 C7orf65Q6ZTY9 151 aa6.02□□□□□ -1.45
PTCD3-201ENST00000254630 CXCL6P80162 114 aa6.01□□□□□ -1.45
PTCD3-201ENST00000254630 MOBPQ13875 183 aa6.01□□□□□ -1.45
PTCD3-201ENST00000254630 SMIM26A0A096LP01 95 aa6.01□□□□□ -1.45
PTCD3-201ENST00000254630 DSCAML1Q8TD84 2053 aa6.01□□□□□ -1.45
PTCD3-201ENST00000254630 LINC00167Q96N53 147 aa6.01□□□□□ -1.45
PTCD3-201ENST00000254630 PHF5AQ7RTV0 110 aaKnown RBP6□□□□□ -1.45
PTCD3-201ENST00000254630 LINC00315P59091 139 aa6□□□□□ -1.45
PTCD3-201ENST00000254630 CNOT1A5YKK6 2376 aaKnown RBP6□□□□□ -1.45
PTCD3-201ENST00000254630 GPR179Q6PRD1 2367 aa6□□□□□ -1.45
PTCD3-201ENST00000254630 SOSTDC1Q6X4U4 206 aa5.99□□□□□ -1.45
PTCD3-201ENST00000254630 SPACA4Q8TDM5 124 aa5.99□□□□□ -1.45
PTCD3-201ENST00000254630 CHTF8P0CG12 524 aa5.99□□□□□ -1.45
PTCD3-201ENST00000254630 SMIM29Q86T20 159 aa5.99□□□□□ -1.45
PTCD3-201ENST00000254630 FAM229AH3BQW9 127 aa5.99□□□□□ -1.45
PTCD3-201ENST00000254630 CRYGAP11844 174 aa5.98□□□□□ -1.45
PTCD3-201ENST00000254630 LINC00846Q9NV44 126 aa5.98□□□□□ -1.45
PTCD3-201ENST00000254630 NBDYA0A0U1RRE5 68 aa5.98□□□□□ -1.45
PTCD3-201ENST00000254630 ELOF1P60002 83 aaKnown RBP5.98□□□□□ -1.45
PTCD3-201ENST00000254630 SPATA3Q8NHX4 192 aa5.98□□□□□ -1.45
PTCD3-201ENST00000254630 ARHGAP32A7KAX9 2087 aa5.98□□□□□ -1.45
PTCD3-201ENST00000254630 C1orf64Q8NEQ6 169 aa5.98□□□□□ -1.45
PTCD3-201ENST00000254630 IGHV3OR16-9A0A0B4J2B5 98 aa5.97□□□□□ -1.45
PTCD3-201ENST00000254630 hDV103S1A0JD37 113 aa5.97□□□□□ -1.45
PTCD3-201ENST00000254630 IGKV2D-30A0A075B6S6 120 aa5.97□□□□□ -1.45
PTCD3-201ENST00000254630 IGKV2-30P06310 120 aa5.97□□□□□ -1.45
PTCD3-201ENST00000254630 ROS1P08922 2347 aa5.97□□□□□ -1.45
PTCD3-201ENST00000254630 AKAP6Q13023 2319 aa5.97□□□□□ -1.45
PTCD3-201ENST00000254630 Q8NAQ8 132 aa5.97□□□□□ -1.45
PTCD3-201ENST00000254630 LINC00588Q9Y4M8 146 aa5.97□□□□□ -1.45
PTCD3-201ENST00000254630 IGLV5-45A0A087WSX0 123 aa5.96□□□□□ -1.45
PTCD3-201ENST00000254630 C16orf90A8MZG2 172 aa5.96□□□□□ -1.46
PTCD3-201ENST00000254630 Q8NBF4 154 aa5.96□□□□□ -1.46
PTCD3-201ENST00000254630 C1orf195Q5TG92 126 aa5.96□□□□□ -1.46
PTCD3-201ENST00000254630 PCNX1Q96RV3 2341 aa5.96□□□□□ -1.46
PTCD3-201ENST00000254630 TMEM254Q8TBM7 123 aa5.95□□□□□ -1.46
PTCD3-201ENST00000254630 Q6ZRP5 223 aa5.95□□□□□ -1.46
PTCD3-201ENST00000254630 AGRNO00468 2067 aa5.94□□□□□ -1.46
PTCD3-201ENST00000254630 EPM2AB3EWF7 344 aa5.94□□□□□ -1.46
PTCD3-201ENST00000254630 TYMSOSQ8TAI1 123 aa5.94□□□□□ -1.46
PTCD3-201ENST00000254630 GVQW2A0A096LPI5 108 aaPredicted RBP5.94□□□□□ -1.46
PTCD3-201ENST00000254630 PSPHP1O15172 72 aa5.94□□□□□ -1.46
PTCD3-201ENST00000254630 Q6ZRX8 168 aa5.94□□□□□ -1.46
PTCD3-201ENST00000254630 TP53AIP1Q9HCN2 124 aa5.93□□□□□ -1.46
PTCD3-201ENST00000254630 LINC00476Q8WZB0 136 aa5.92□□□□□ -1.46
PTCD3-201ENST00000254630 FAM218AQ96MZ4 157 aa5.92□□□□□ -1.46
PTCD3-201ENST00000254630 PLA2G1BP04054 148 aaKnown RBP5.92□□□□□ -1.46
PTCD3-201ENST00000254630 LINC00313P59037 77 aa5.92□□□□□ -1.46
PTCD3-201ENST00000254630 RPL37AP61513 92 aaKnown RBP5.92□□□□□ -1.46
PTCD3-201ENST00000254630 WWC2-AS2Q96NR7 200 aa5.92□□□□□ -1.46
PTCD3-201ENST00000254630 Q9UF83 564 aa5.92□□□□□ -1.46
PTCD3-201ENST00000254630 BCE1O60756 84 aa5.92□□□□□ -1.46
PTCD3-201ENST00000254630 ABCA1O95477 2261 aa5.91□□□□□ -1.46
PTCD3-201ENST00000254630 KRTAP10-11P60412 298 aa5.91□□□□□ -1.46
PTCD3-201ENST00000254630 Q6ZQT0 140 aa5.91□□□□□ -1.46
PTCD3-201ENST00000254630 LOC110117498A0A087WWA1 95 aa5.9□□□□□ -1.46
PTCD3-201ENST00000254630 ST20-AS1Q8NBB2 130 aa5.9□□□□□ -1.46
PTCD3-201ENST00000254630 ZFHX2Q9C0A1 2572 aaPredicted RBP5.9□□□□□ -1.46
PTCD3-201ENST00000254630 ACYP2P14621 99 aa5.9□□□□□ -1.47
PTCD3-201ENST00000254630 DNAH10OSP0CZ25 163 aa5.89□□□□□ -1.47
PTCD3-201ENST00000254630 PMAIP1Q13794 54 aa5.89□□□□□ -1.47
PTCD3-201ENST00000254630 A0A1B0GW54 56 aa5.89□□□□□ -1.47
PTCD3-201ENST00000254630 KLK9Q2XQG4 91 aa5.89□□□□□ -1.47
PTCD3-201ENST00000254630 FAM168BA1KXE4 195 aa5.89□□□□□ -1.47
PTCD3-201ENST00000254630 HIVEP2P31629 2446 aa5.89□□□□□ -1.47
PTCD3-201ENST00000254630 CDIP1Q9H305 208 aa5.88□□□□□ -1.47
PTCD3-201ENST00000254630 A0A1B0GU69 56 aa5.88□□□□□ -1.47
PTCD3-201ENST00000254630 Q96NJ1 140 aa5.88□□□□□ -1.47
PTCD3-201ENST00000254630 MUC6Q6W4X9 2439 aa5.87□□□□□ -1.47
PTCD3-201ENST00000254630 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.86□□□□□ -1.474e-7■■■■■ 28.3
PTCD3-201ENST00000254630 PLXNB1O43157 2135 aa5.85□□□□□ -1.47
PTCD3-201ENST00000254630 PRRC2AP48634 2157 aaKnown RBP5.85□□□□□ -1.47
PTCD3-201ENST00000254630 SPTBN2O15020 2390 aa5.85□□□□□ -1.47
PTCD3-201ENST00000254630 KRTAP10-3P60369 221 aa5.85□□□□□ -1.47
PTCD3-201ENST00000254630 CSNK1G2-AS1Q8NCQ2 148 aa5.85□□□□□ -1.47
PTCD3-201ENST00000254630 J3QL48 77 aa5.85□□□□□ -1.47
PTCD3-201ENST00000254630 SMCPP49901 116 aaPredicted RBP5.85□□□□□ -1.47
PTCD3-201ENST00000254630 SERTAD4-AS1Q5TG53 156 aa5.84□□□□□ -1.47
PTCD3-201ENST00000254630 H3BPC8 53 aa5.84□□□□□ -1.47
PTCD3-201ENST00000254630 K7EIL1 84 aa5.84□□□□□ -1.47
PTCD3-201ENST00000254630 IGLV6-57P01721 117 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms