RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 CELA1Q9UNI1 258 aa6.02□□□□□ -1.45
VPS4B-201ENST00000238497 PLECQ15149 4684 aaKnown RBP6.02□□□□□ -1.45
VPS4B-201ENST00000238497 LINC00476Q8WZB0 136 aa6.02□□□□□ -1.45
VPS4B-201ENST00000238497 TCL1BO95988 128 aa6.02□□□□□ -1.45
VPS4B-201ENST00000238497 DEFB131BA0A096LNP1 70 aa6.01□□□□□ -1.45
VPS4B-201ENST00000238497 TRBV6-4A0A1B0GX49 114 aa6.01□□□□□ -1.45
VPS4B-201ENST00000238497 SPART-AS1P0CW21 52 aa6.01□□□□□ -1.45
VPS4B-201ENST00000238497 CKS1BP61024 79 aa6.01□□□□□ -1.45
VPS4B-201ENST00000238497 LINC00269Q8N2A0 174 aa6.01□□□□□ -1.45
VPS4B-201ENST00000238497 CLEC2BQ92478 149 aa6.01□□□□□ -1.45
VPS4B-201ENST00000238497 PRO0255Q9UI72 69 aa6.01□□□□□ -1.45
VPS4B-201ENST00000238497 RYR2Q92736 4967 aa6.01□□□□□ -1.45
VPS4B-201ENST00000238497 RPL13AP40429 203 aaKnown RBP6□□□□□ -1.45
VPS4B-201ENST00000238497 SS18L2Q9UHA2 77 aa6□□□□□ -1.45
VPS4B-201ENST00000238497 TRAV10A0A0B4J240 114 aa6□□□□□ -1.45
VPS4B-201ENST00000238497 IGHV3-33P01772 117 aa6□□□□□ -1.45
VPS4B-201ENST00000238497 C2orf82Q6UX34 121 aa6□□□□□ -1.45
VPS4B-201ENST00000238497 MALP21145 153 aa5.99□□□□□ -1.45
VPS4B-201ENST00000238497 DYNC2H1Q8NCM8 4307 aaKnown RBP5.99□□□□□ -1.45
VPS4B-201ENST00000238497 SMIM1B2RUZ4 78 aa5.99□□□□□ -1.45
VPS4B-201ENST00000238497 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.98□□□□□ -1.45
VPS4B-201ENST00000238497 ATP5G1P05496 136 aa5.98□□□□□ -1.45
VPS4B-201ENST00000238497 LYRM7Q5U5X0 104 aa5.98□□□□□ -1.45
VPS4B-201ENST00000238497 UBE2DNLQ8IWF7 75 aa5.98□□□□□ -1.45
VPS4B-201ENST00000238497 MIR7-3HGQ8N6C7 128 aa5.98□□□□□ -1.45
VPS4B-201ENST00000238497 KLK12Q9UKR0 248 aa5.98□□□□□ -1.45
VPS4B-201ENST00000238497 COX6CP09669 75 aa5.98□□□□□ -1.45
VPS4B-201ENST00000238497 SMIM9A6NGZ8 99 aa5.97□□□□□ -1.45
VPS4B-201ENST00000238497 F8W1H4 67 aa5.97□□□□□ -1.45
VPS4B-201ENST00000238497 J3QR89 54 aa5.97□□□□□ -1.45
VPS4B-201ENST00000238497 SS18Q15532 418 aa5.97□□□□□ -1.45
VPS4B-201ENST00000238497 MIAQ16674 131 aa5.97□□□□□ -1.45
VPS4B-201ENST00000238497 COX7B2Q8TF08 81 aa5.97□□□□□ -1.45
VPS4B-201ENST00000238497 SPANXB1Q9NS25 103 aaPredicted RBP5.97□□□□□ -1.45
VPS4B-201ENST00000238497 TRIAP1O43715 76 aa5.97□□□□□ -1.45
VPS4B-201ENST00000238497 TIRAPP58753 221 aa5.97□□□□□ -1.45
VPS4B-201ENST00000238497 UBE2WQ96B02 151 aa5.96□□□□□ -1.45
VPS4B-201ENST00000238497 M0R2N4 97 aa5.96□□□□□ -1.46
VPS4B-201ENST00000238497 LINC00308Q8TCZ7 52 aa5.96□□□□□ -1.46
VPS4B-201ENST00000238497 LINC00959A0A1B0GUT2 108 aa5.96□□□□□ -1.46
VPS4B-201ENST00000238497 SLC25A20O43772 301 aa5.96□□□□□ -1.46
VPS4B-201ENST00000238497 C9orf116Q5BN46 136 aaPredicted RBP5.95□□□□□ -1.46
VPS4B-201ENST00000238497 ICOSQ9Y6W8 199 aa5.95□□□□□ -1.46
VPS4B-201ENST00000238497 PRR3P79522 188 aaKnown RBP5.95□□□□□ -1.46
VPS4B-201ENST00000238497 SMIM20Q8N5G0 67 aa5.95□□□□□ -1.46
VPS4B-201ENST00000238497 NTN5Q8WTR8 489 aaPredicted RBP5.95□□□□□ -1.46
VPS4B-201ENST00000238497 HYDINQ4G0P3 5121 aa5.95□□□□□ -1.46
VPS4B-201ENST00000238497 NDUFA1O15239 70 aa5.94□□□□□ -1.46
VPS4B-201ENST00000238497 SIGMAR1Q99720 223 aa5.94□□□□□ -1.46
VPS4B-201ENST00000238497 LITAFQ99732 161 aa5.94□□□□□ -1.46
VPS4B-201ENST00000238497 SOSTDC1Q6X4U4 206 aa5.94□□□□□ -1.46
VPS4B-201ENST00000238497 APLNQ9ULZ1 77 aa5.94□□□□□ -1.46
VPS4B-201ENST00000238497 SND1-IT1Q9HBX3 110 aa5.94□□□□□ -1.46
VPS4B-201ENST00000238497 SMCPP49901 116 aaPredicted RBP5.93□□□□□ -1.46
VPS4B-201ENST00000238497 REG3AQ06141 175 aa5.93□□□□□ -1.46
VPS4B-201ENST00000238497 ANKRD29Q8N6D5 301 aa5.93□□□□□ -1.46
VPS4B-201ENST00000238497 Q9HAA7 133 aa5.93□□□□□ -1.46
VPS4B-201ENST00000238497 LYRM9A8MSI8 78 aa5.93□□□□□ -1.46
VPS4B-201ENST00000238497 ATXN8Q156A1 80 aa5.93□□□□□ -1.46
VPS4B-201ENST00000238497 MRPL23Q16540 153 aaKnown RBP5.93□□□□□ -1.46
VPS4B-201ENST00000238497 CHCHD10Q8WYQ3 142 aaPredicted RBP5.93□□□□□ -1.46
VPS4B-201ENST00000238497 TRBV20-1A0A075B6N2 111 aa5.92□□□□□ -1.46
VPS4B-201ENST00000238497 CRPP02741 224 aa5.92□□□□□ -1.46
VPS4B-201ENST00000238497 TEX49A0A1B0GTD5 131 aa5.92□□□□□ -1.46
VPS4B-201ENST00000238497 LINC01620Q4KN68 170 aa5.92□□□□□ -1.46
VPS4B-201ENST00000238497 LYSTQ99698 3801 aa5.92□□□□□ -1.46
VPS4B-201ENST00000238497 A0A0B4J2C4 111 aa5.91□□□□□ -1.46
VPS4B-201ENST00000238497 C6orf223Q8N319 242 aa5.91□□□□□ -1.46
VPS4B-201ENST00000238497 CSDC2Q9Y534 153 aaKnown RBP5.91□□□□□ -1.46
VPS4B-201ENST00000238497 IGHV3OR16-9A0A0B4J2B5 98 aa5.91□□□□□ -1.46
VPS4B-201ENST00000238497 GAGE12HA6NDE8 117 aa5.91□□□□□ -1.46
VPS4B-201ENST00000238497 HIGD2BQ4VC39 106 aa5.91□□□□□ -1.46
VPS4B-201ENST00000238497 CARD19Q96LW7 228 aa5.91□□□□□ -1.46
VPS4B-201ENST00000238497 EPPK1P58107 5090 aaKnown RBP5.91□□□□□ -1.46
VPS4B-201ENST00000238497 COX7A2LO14548 114 aa5.91□□□□□ -1.46
VPS4B-201ENST00000238497 FOXI1Q12951 378 aa5.91□□□□□ -1.46
VPS4B-201ENST00000238497 IGLV5-39A0A0G2JS06 123 aa5.9□□□□□ -1.46
VPS4B-201ENST00000238497 ALMS1Q8TCU4 4167 aa5.9□□□□□ -1.46
VPS4B-201ENST00000238497 SPANXDQ9BXN6 97 aa5.9□□□□□ -1.47
VPS4B-201ENST00000238497 SPANXCQ9NY87 97 aa5.9□□□□□ -1.47
VPS4B-201ENST00000238497 PRO0461Q9UI25 63 aa5.89□□□□□ -1.47
VPS4B-201ENST00000238497 KMT2AQ03164 3969 aa5.89□□□□□ -1.47
VPS4B-201ENST00000238497 DNAH1Q9P2D7 4330 aa5.89□□□□□ -1.47
VPS4B-201ENST00000238497 IGLV5-45A0A087WSX0 123 aa5.89□□□□□ -1.47
VPS4B-201ENST00000238497 B5MCH6 92 aa5.89□□□□□ -1.47
VPS4B-201ENST00000238497 IFITM1P13164 125 aa5.89□□□□□ -1.47
VPS4B-201ENST00000238497 CCL18P55774 89 aa5.89□□□□□ -1.47
VPS4B-201ENST00000238497 WFDC10BQ8IUB3 73 aa5.89□□□□□ -1.47
VPS4B-201ENST00000238497 SLPIP03973 132 aa5.88□□□□□ -1.47
VPS4B-201ENST00000238497 TEN1Q86WV5 123 aa5.88□□□□□ -1.47
VPS4B-201ENST00000238497 XAGE1AQ9HD64 81 aa5.88□□□□□ -1.47
VPS4B-201ENST00000238497 A0A087WZ39 114 aa5.88□□□□□ -1.47
VPS4B-201ENST00000238497 NCR3O14931 201 aa5.88□□□□□ -1.47
VPS4B-201ENST00000238497 UNQ6190/PRO20217Q6UXQ8 127 aa5.88□□□□□ -1.47
VPS4B-201ENST00000238497 IGKV2D-24A0A075B6R9 120 aa5.87□□□□□ -1.47
VPS4B-201ENST00000238497 DNAL4O96015 105 aa5.87□□□□□ -1.47
VPS4B-201ENST00000238497 PPDPFLQ8WWR9 84 aa5.87□□□□□ -1.47
VPS4B-201ENST00000238497 H7C423 109 aa5.87□□□□□ -1.47
VPS4B-201ENST00000238497 SPAG11BQ08648 103 aa5.87□□□□□ -1.47
VPS4B-201ENST00000238497 LINC00337Q8N6G1 96 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms