RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 UBE2D4Q9Y2X8 147 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 UBE2D1P51668 147 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 HCP5Q6MZN7 132 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 IGHV3-74A0A0B4J1X5 117 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 IBA57-AS1B1ANH7 110 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 ZFAND2AQ8N6M9 145 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 LOC101927531A0A1B0GV80 90 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 FSTL3O95633 263 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 ERCC6L2Q5T890 1561 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 C18orf65Q6ZTR6 163 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 Q8N3U1 123 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 TRBV6-6A0A0A6YYG2 114 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 A0A1B0GU69 56 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 IGLV2-8P01709 118 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 A0A0J9YX75 114 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 FGF22Q9HCT0 170 aa2.55□□□□□ -2
SCN1A-221ENST00000641996 A0A0J9YY99 117 aa2.54□□□□□ -2
SCN1A-221ENST00000641996 WISP3O95389 354 aaPredicted RBP2.54□□□□□ -2
SCN1A-221ENST00000641996 J3QRE1 110 aa2.54□□□□□ -2
SCN1A-221ENST00000641996 MSMBP08118 114 aa2.54□□□□□ -2
SCN1A-221ENST00000641996 IGHV3-11P01762 117 aa2.54□□□□□ -2
SCN1A-221ENST00000641996 Q6ZPA2 131 aa2.54□□□□□ -2
SCN1A-221ENST00000641996 IGKV2-40A0A087WW87 121 aaPredicted RBP2.54□□□□□ -2
SCN1A-221ENST00000641996 TRBV6-8A0A0A6YYG3 113 aa2.54□□□□□ -2
SCN1A-221ENST00000641996 IGKV2D-40P01614 121 aaPredicted RBP2.54□□□□□ -2
SCN1A-221ENST00000641996 PATE2Q6UY27 113 aa2.54□□□□□ -2
SCN1A-221ENST00000641996 C14orf178Q8N769 122 aaPredicted RBP2.54□□□□□ -2
SCN1A-221ENST00000641996 IGLV5-39A0A0G2JS06 123 aa2.54□□□□□ -2
SCN1A-221ENST00000641996 F8W735 103 aaPredicted RBP2.54□□□□□ -2
SCN1A-221ENST00000641996 BBC3Q96PG8 261 aaPredicted RBP2.54□□□□□ -2
SCN1A-221ENST00000641996 Q8TAT8 98 aa2.54□□□□□ -2
SCN1A-221ENST00000641996 DSCR9P59020 149 aa2.54□□□□□ -2
SCN1A-221ENST00000641996 H0Y9P7 68 aa2.54□□□□□ -2
SCN1A-221ENST00000641996 SMIM1B2RUZ4 78 aa2.53□□□□□ -2
SCN1A-221ENST00000641996 MIR7-3HGQ8N6C7 128 aa2.53□□□□□ -2
SCN1A-221ENST00000641996 MED14OSP0DP75 135 aa2.53□□□□□ -2
SCN1A-221ENST00000641996 C19orf73Q9NVV2 129 aa2.53□□□□□ -2
SCN1A-221ENST00000641996 LRP5O75197 1615 aa2.53□□□□□ -2
SCN1A-221ENST00000641996 TMEM190Q8WZ59 177 aa2.53□□□□□ -2
SCN1A-221ENST00000641996 ZNF71Q9NQZ8 489 aaPredicted RBP2.53□□□□□ -2
SCN1A-221ENST00000641996 C17orf98A8MV24 154 aa2.53□□□□□ -2
SCN1A-221ENST00000641996 DEFB110Q30KQ9 67 aa2.53□□□□□ -2
SCN1A-221ENST00000641996 SMIM2Q9BVW6 85 aa2.53□□□□□ -2
SCN1A-221ENST00000641996 NDUFA4L2Q9NRX3 87 aa2.53□□□□□ -2
SCN1A-221ENST00000641996 TSHBP01222 138 aa2.53□□□□□ -2
SCN1A-221ENST00000641996 WFDC10BQ8IUB3 73 aa2.53□□□□□ -2
SCN1A-221ENST00000641996 IGHV7-81A0A0B4J1V7 117 aa2.53□□□□□ -2
SCN1A-221ENST00000641996 NDUFAF8A1L188 74 aa2.53□□□□□ -2
SCN1A-221ENST00000641996 IGHV4-30-4P0DP06 118 aa2.53□□□□□ -2
SCN1A-221ENST00000641996 MUC22E2RYF6 1773 aaPredicted RBP2.53□□□□□ -2
SCN1A-221ENST00000641996 IGLV3-21P80748 117 aaPredicted RBP2.53□□□□□ -2.01
SCN1A-221ENST00000641996 JMJD7-PLA2G4BH0Y9G9 81 aa2.53□□□□□ -2.01
SCN1A-221ENST00000641996 CRIP3Q6Q6R5 217 aa2.53□□□□□ -2.01
SCN1A-221ENST00000641996 IGHV3-15A0A0B4J1V0 119 aa2.52□□□□□ -2.01
SCN1A-221ENST00000641996 PHF5AQ7RTV0 110 aaKnown RBP2.52□□□□□ -2.01
SCN1A-221ENST00000641996 Q8NBF4 154 aa2.52□□□□□ -2.01
SCN1A-221ENST00000641996 C17orf82Q86X59 251 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-221ENST00000641996 RNF185Q96GF1 192 aa2.52□□□□□ -2.01
SCN1A-221ENST00000641996 APCP25054 2843 aa2.52□□□□□ -2.01
SCN1A-221ENST00000641996 A6NN06 94 aa2.52□□□□□ -2.01
SCN1A-221ENST00000641996 H0YGX0 51 aa2.52□□□□□ -2.01
SCN1A-221ENST00000641996 LINC00467Q9BRT7 94 aa2.52□□□□□ -2.01
SCN1A-221ENST00000641996 RPL39LQ96EH5 51 aaKnown RBP2.52□□□□□ -2.01
SCN1A-221ENST00000641996 GLI3P10071 1580 aa2.52□□□□□ -2.01
SCN1A-221ENST00000641996 IGKV4-1P06312 121 aa2.52□□□□□ -2.01
SCN1A-221ENST00000641996 DEFB121Q5J5C9 76 aa2.52□□□□□ -2.01
SCN1A-221ENST00000641996 Q5VV11 94 aa2.52□□□□□ -2.01
SCN1A-221ENST00000641996 WFDC13Q8IUB5 93 aa2.52□□□□□ -2.01
SCN1A-221ENST00000641996 IGKV3-7A0A075B6H7 116 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 IGHV3-66A0A0C4DH42 116 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 CCL3P10147 92 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 SMIM29Q86T20 159 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 Q8NAQ8 132 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 KLF16Q9BXK1 252 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-221ENST00000641996 S4R3C0 116 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 ACYP2P14621 99 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 IGHV3OR16-12A0A075B7B8 117 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 THSD7AQ9UPZ6 1657 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 IGLV3-12A0A075B6K2 115 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 NUPR2A6NF83 97 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 RPL39P5Q59GN2 51 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 TRANK1O15050 2925 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 IGHV3OR16-8A0A075B7F1 116 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 IGLV3-32A0A0A0MS00 114 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 PLA2G1BP04054 148 aaKnown RBP2.51□□□□□ -2.01
SCN1A-221ENST00000641996 CSNK1G2-AS1Q8NCQ2 148 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 CIRBP-AS1Q8TBR5 109 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 IGHV3-20A0A0C4DH32 117 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 FAM167A-AS1Q96KT0 104 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 A8MU10 97 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 PDE6GP18545 87 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 KLKP1Q107X0 134 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 URB1-AS1Q96HZ7 61 aa2.51□□□□□ -2.01
SCN1A-221ENST00000641996 IGLV7-46A0A075B6I9 117 aa2.5□□□□□ -2.01
SCN1A-221ENST00000641996 TRBV6-1A0A0K0K1D8 114 aa2.5□□□□□ -2.01
SCN1A-221ENST00000641996 PATE4P0C8F1 98 aa2.5□□□□□ -2.01
SCN1A-221ENST00000641996 Q8N2B8 174 aa2.5□□□□□ -2.01
SCN1A-221ENST00000641996 PRAC2D3DTV9 90 aa2.5□□□□□ -2.01
SCN1A-221ENST00000641996 DEFB105AQ8NG35 78 aa2.5□□□□□ -2.01
SCN1A-221ENST00000641996 C16orf74Q96GX8 76 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms