RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 PRRC2CQ9Y520 2896 aaKnown RBP3.72□□□□□ -1.81
SCN1A-218ENST00000640036 MUC22E2RYF6 1773 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-218ENST00000640036 CRYGBP07316 175 aa3.72□□□□□ -1.81
SCN1A-218ENST00000640036 CHCHD10Q8WYQ3 142 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-218ENST00000640036 A0A1W2PPR1 153 aa3.72□□□□□ -1.81
SCN1A-218ENST00000640036 CHCHD7Q9BUK0 85 aa3.72□□□□□ -1.81
SCN1A-218ENST00000640036 A0A096LNI7 61 aa3.72□□□□□ -1.81
SCN1A-218ENST00000640036 C3orf79P0CE67 100 aa3.71□□□□□ -1.81
SCN1A-218ENST00000640036 IGLV1-40P01703 118 aa3.71□□□□□ -1.82
SCN1A-218ENST00000640036 PCP2Q8IVA1 136 aa3.71□□□□□ -1.82
SCN1A-218ENST00000640036 MDFICQ9P1T7 246 aa3.71□□□□□ -1.82
SCN1A-218ENST00000640036 A0A0J9YXY3 114 aa3.71□□□□□ -1.82
SCN1A-218ENST00000640036 FXYD5Q96DB9 178 aa3.71□□□□□ -1.82
SCN1A-218ENST00000640036 LINC00574Q9H8X3 128 aa3.71□□□□□ -1.82
SCN1A-218ENST00000640036 A0A0U1RQV1 116 aa3.71□□□□□ -1.82
SCN1A-218ENST00000640036 ARTNQ5T4W7 220 aa3.71□□□□□ -1.82
SCN1A-218ENST00000640036 Q6ZVQ6 151 aa3.71□□□□□ -1.82
SCN1A-218ENST00000640036 TRBV6-8A0A0A6YYG3 113 aa3.71□□□□□ -1.82
SCN1A-218ENST00000640036 LY6LH3BQJ8 138 aa3.71□□□□□ -1.82
SCN1A-218ENST00000640036 Q6ZS46 218 aa3.71□□□□□ -1.82
SCN1A-218ENST00000640036 COX17Q14061 63 aa3.7□□□□□ -1.82
SCN1A-218ENST00000640036 C12orf74Q32Q52 190 aa3.7□□□□□ -1.82
SCN1A-218ENST00000640036 SBSPONQ8IVN8 264 aa3.7□□□□□ -1.82
SCN1A-218ENST00000640036 DKK2Q9UBU2 259 aa3.7□□□□□ -1.82
SCN1A-218ENST00000640036 ATRAIDQ6UW56 229 aa3.7□□□□□ -1.82
SCN1A-218ENST00000640036 SRCAPQ6ZRS2 3230 aa3.7□□□□□ -1.82
SCN1A-218ENST00000640036 F8WDY8 70 aa3.7□□□□□ -1.82
SCN1A-218ENST00000640036 PLAC8L1A1L4L8 177 aa3.7□□□□□ -1.82
SCN1A-218ENST00000640036 CXCL6P80162 114 aa3.7□□□□□ -1.82
SCN1A-218ENST00000640036 A0A1B0GXF2 115 aa3.69□□□□□ -1.82
SCN1A-218ENST00000640036 C1orf195Q5TG92 126 aa3.69□□□□□ -1.82
SCN1A-218ENST00000640036 MRPL51Q4U2R6 128 aaKnown RBP3.69□□□□□ -1.82
SCN1A-218ENST00000640036 TRANK1O15050 2925 aa3.69□□□□□ -1.82
SCN1A-218ENST00000640036 FOXI1Q12951 378 aa3.69□□□□□ -1.82
SCN1A-218ENST00000640036 AKAP13Q12802 2813 aa3.69□□□□□ -1.82
SCN1A-218ENST00000640036 K7EN84 100 aa3.69□□□□□ -1.82
SCN1A-218ENST00000640036 WFDC1Q9HC57 220 aa3.69□□□□□ -1.82
SCN1A-218ENST00000640036 DEFB1P60022 68 aa3.69□□□□□ -1.82
SCN1A-218ENST00000640036 ZNF580Q9UK33 172 aa3.69□□□□□ -1.82
SCN1A-218ENST00000640036 COL6A5A8TX70 2615 aa3.69□□□□□ -1.82
SCN1A-218ENST00000640036 LINC01556Q5JQF7 62 aa3.68□□□□□ -1.82
SCN1A-218ENST00000640036 COA6Q5JTJ3 125 aaKnown RBP3.68□□□□□ -1.82
SCN1A-218ENST00000640036 SPINK6Q6UWN8 80 aa3.68□□□□□ -1.82
SCN1A-218ENST00000640036 NTN5Q8WTR8 489 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-218ENST00000640036 C1orf137Q5JT78 98 aa3.68□□□□□ -1.82
SCN1A-218ENST00000640036 ZFAND2AQ8N6M9 145 aa3.68□□□□□ -1.82
SCN1A-218ENST00000640036 C18orf32Q8TCD1 76 aa3.68□□□□□ -1.82
SCN1A-218ENST00000640036 C11orf86A6NJI1 115 aa3.68□□□□□ -1.82
SCN1A-218ENST00000640036 MRPL35Q9NZE8 188 aaKnown RBP3.68□□□□□ -1.82
SCN1A-218ENST00000640036 UNC79Q9P2D8 2635 aa3.68□□□□□ -1.82
SCN1A-218ENST00000640036 SMIM26A0A096LP01 95 aa3.68□□□□□ -1.82
SCN1A-218ENST00000640036 EPM2AB3EWF7 344 aa3.68□□□□□ -1.82
SCN1A-218ENST00000640036 PCNTO95613 3336 aa3.68□□□□□ -1.82
SCN1A-218ENST00000640036 CIRBP-AS1Q8TBR5 109 aa3.68□□□□□ -1.82
SCN1A-218ENST00000640036 LIMD2Q9BT23 127 aa3.68□□□□□ -1.82
SCN1A-218ENST00000640036 PMAIP1Q13794 54 aa3.68□□□□□ -1.82
SCN1A-218ENST00000640036 C1orf147Q96MC9 270 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-218ENST00000640036 CXCL1P09341 107 aa3.67□□□□□ -1.82
SCN1A-218ENST00000640036 PRR4Q16378 134 aa3.67□□□□□ -1.82
SCN1A-218ENST00000640036 TEX49A0A1B0GTD5 131 aa3.67□□□□□ -1.82
SCN1A-218ENST00000640036 RBX1P62877 108 aa3.67□□□□□ -1.82
SCN1A-218ENST00000640036 C10orf25Q5T742 122 aa3.67□□□□□ -1.82
SCN1A-218ENST00000640036 Q6ZSR3 168 aa3.67□□□□□ -1.82
SCN1A-218ENST00000640036 CEP350Q5VT06 3117 aa3.67□□□□□ -1.82
SCN1A-218ENST00000640036 ODF3L2Q3SX64 289 aa3.67□□□□□ -1.82
SCN1A-218ENST00000640036 FAM30AQ9NZY2 134 aa3.67□□□□□ -1.82
SCN1A-218ENST00000640036 IBA57-AS1B1ANH7 110 aa3.66□□□□□ -1.82
SCN1A-218ENST00000640036 PRAC2D3DTV9 90 aa3.66□□□□□ -1.82
SCN1A-218ENST00000640036 Q6JHZ5 121 aa3.66□□□□□ -1.82
SCN1A-218ENST00000640036 Q6ZSN1 163 aa3.66□□□□□ -1.82
SCN1A-218ENST00000640036 Q8N6K4 173 aa3.66□□□□□ -1.82
SCN1A-218ENST00000640036 NDUFV3P56181 108 aaKnown RBP3.66□□□□□ -1.82
SCN1A-218ENST00000640036 SRSF3P84103 164 aaKnown RBP3.66□□□□□ -1.82
SCN1A-218ENST00000640036 CD164L2Q6UWJ8 174 aa3.66□□□□□ -1.82
SCN1A-218ENST00000640036 NBDYA0A0U1RRE5 68 aa3.66□□□□□ -1.82
SCN1A-218ENST00000640036 NCR3O14931 201 aa3.66□□□□□ -1.82
SCN1A-218ENST00000640036 SERTAD4-AS1Q5TG53 156 aa3.66□□□□□ -1.82
SCN1A-218ENST00000640036 COX6B2Q6YFQ2 88 aa3.66□□□□□ -1.82
SCN1A-218ENST00000640036 GCN1Q92616 2671 aaKnown RBP3.66□□□□□ -1.82
SCN1A-218ENST00000640036 E9PLD3 99 aa3.65□□□□□ -1.82
SCN1A-218ENST00000640036 SDIM1Q6ZPB5 146 aa3.65□□□□□ -1.82
SCN1A-218ENST00000640036 IGLV9-49A0A0B4J1Y8 123 aa3.65□□□□□ -1.82
SCN1A-218ENST00000640036 RPL37AP61513 92 aaKnown RBP3.65□□□□□ -1.82
SCN1A-218ENST00000640036 RPL39LQ96EH5 51 aaKnown RBP3.65□□□□□ -1.82
SCN1A-218ENST00000640036 IGKV3D-7A0A0C4DH55 119 aa3.65□□□□□ -1.82
SCN1A-218ENST00000640036 M0QXV9 152 aa3.65□□□□□ -1.82
SCN1A-218ENST00000640036 TIMM17BO60830 172 aa3.65□□□□□ -1.82
SCN1A-218ENST00000640036 COLCA2A8K830 154 aa3.65□□□□□ -1.83
SCN1A-218ENST00000640036 Q8N2B8 174 aa3.65□□□□□ -1.83
SCN1A-218ENST00000640036 COL27A1Q8IZC6 1860 aaPredicted RBP3.65□□□□□ -1.83
SCN1A-218ENST00000640036 MPLKIPQ8TAP9 179 aa3.65□□□□□ -1.83
SCN1A-218ENST00000640036 DCANP1Q8TF63 244 aa3.65□□□□□ -1.83
SCN1A-218ENST00000640036 E7EUB6 86 aa3.65□□□□□ -1.83
SCN1A-218ENST00000640036 A0A1B0GW54 56 aa3.64□□□□□ -1.83
SCN1A-218ENST00000640036 K7EIL1 84 aa3.64□□□□□ -1.83
SCN1A-218ENST00000640036 Q6Q795 121 aa3.64□□□□□ -1.83
SCN1A-218ENST00000640036 TOMM6Q96B49 74 aa3.64□□□□□ -1.83
SCN1A-218ENST00000640036 CFAP126Q5VTH2 177 aa3.64□□□□□ -1.83
SCN1A-218ENST00000640036 PPDPFQ9H3Y8 114 aa3.64□□□□□ -1.83
SCN1A-218ENST00000640036 TP53AIP1Q9HCN2 124 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 115.2 ms