RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 SLC51BQ86UW2 128 aa8.98□□□□□ -0.97
SYNE2-228ENST00000639659 SMIM7Q9BQ49 75 aa8.98□□□□□ -0.97
SYNE2-228ENST00000639659 SMDT1Q9H4I9 107 aa8.98□□□□□ -0.97
SYNE2-228ENST00000639659 PPP1R2P9O14990 202 aa8.97□□□□□ -0.97
SYNE2-228ENST00000639659 TIMM21Q9BVV7 248 aa8.97□□□□□ -0.97
SYNE2-228ENST00000639659 IGHV3OR16-9A0A0B4J2B5 98 aa8.96□□□□□ -0.98
SYNE2-228ENST00000639659 F8WDY8 70 aa8.96□□□□□ -0.98
SYNE2-228ENST00000639659 TLX1NBP0CAT3 122 aa8.96□□□□□ -0.98
SYNE2-228ENST00000639659 HBBP68871 147 aa8.96□□□□□ -0.98
SYNE2-228ENST00000639659 TMEM241Q24JQ0 296 aa8.96□□□□□ -0.98
SYNE2-228ENST00000639659 LINC01551Q86U37 167 aa8.96□□□□□ -0.98
SYNE2-228ENST00000639659 KRTAP7-1Q8IUC3 87 aa8.96□□□□□ -0.98
SYNE2-228ENST00000639659 TGIF2-C20orf24A0A0A6YYL0 155 aa8.95□□□□□ -0.98
SYNE2-228ENST00000639659 MRPL51Q4U2R6 128 aaKnown RBP8.95□□□□□ -0.98
SYNE2-228ENST00000639659 C2orf82Q6UX34 121 aa8.94□□□□□ -0.98
SYNE2-228ENST00000639659 EIF5A2Q9GZV4 153 aaKnown RBP8.94□□□□□ -0.98
SYNE2-228ENST00000639659 OSTCQ9NRP0 149 aa8.94□□□□□ -0.98
SYNE2-228ENST00000639659 ZNF727A8MUV8 499 aa8.93□□□□□ -0.98
SYNE2-228ENST00000639659 CKS2P33552 79 aa8.93□□□□□ -0.98
SYNE2-228ENST00000639659 ALKAL2Q6UX46 152 aa8.93□□□□□ -0.98
SYNE2-228ENST00000639659 PACRGQ96M98 296 aaPredicted RBP8.93□□□□□ -0.98
SYNE2-228ENST00000639659 SPANXA1Q9NS26 97 aa8.93□□□□□ -0.98
SYNE2-228ENST00000639659 hCG_2014768A0A024R1R8 64 aa8.92□□□□□ -0.98
SYNE2-228ENST00000639659 TCAPO15273 167 aa8.92□□□□□ -0.98
SYNE2-228ENST00000639659 BLOC1S1P78537 153 aa8.92□□□□□ -0.98
SYNE2-228ENST00000639659 C9orf129Q5T035 196 aaKnown RBP8.92□□□□□ -0.98
SYNE2-228ENST00000639659 FAM104BQ5XKR9 115 aa8.92□□□□□ -0.98
SYNE2-228ENST00000639659 V9GYV3 84 aa8.92□□□□□ -0.98
SYNE2-228ENST00000639659 NDUFC2-KCTD14E9PQ53 114 aa8.91□□□□□ -0.98
SYNE2-228ENST00000639659 TCTE3Q8IZS6 198 aa8.91□□□□□ -0.98
SYNE2-228ENST00000639659 LINC00469Q8N7U9 141 aa8.91□□□□□ -0.98
SYNE2-228ENST00000639659 FAM104AQ969W3 186 aa8.91□□□□□ -0.98
SYNE2-228ENST00000639659 C20orf78Q9BR46 151 aa8.91□□□□□ -0.98
SYNE2-228ENST00000639659 SMIM2Q9BVW6 85 aa8.91□□□□□ -0.98
SYNE2-228ENST00000639659 CARHSP1Q9Y2V2 147 aaKnown RBP8.91□□□□□ -0.98
SYNE2-228ENST00000639659 TRBV30A0A0K0K1B3 111 aa8.9□□□□□ -0.98
SYNE2-228ENST00000639659 ZNF861PO60384 105 aa8.9□□□□□ -0.98
SYNE2-228ENST00000639659 TNFRSF6BO95407 300 aa8.9□□□□□ -0.98
SYNE2-228ENST00000639659 NAT8BQ9UHF3 227 aa8.9□□□□□ -0.98
SYNE2-228ENST00000639659 D6R8Y8 96 aa8.89□□□□□ -0.99
SYNE2-228ENST00000639659 MRPS36P82909 103 aaKnown RBP8.89□□□□□ -0.99
SYNE2-228ENST00000639659 KIAA0087Q14695 138 aa8.89□□□□□ -0.99
SYNE2-228ENST00000639659 KRTAP3-3Q9BYR6 98 aa8.89□□□□□ -0.99
SYNE2-228ENST00000639659 KRTAP3-2Q9BYR7 98 aa8.89□□□□□ -0.99
SYNE2-228ENST00000639659 TOMM7Q9P0U1 55 aa8.89□□□□□ -0.99
SYNE2-228ENST00000639659 LINC00862A6NCI5 91 aa8.88□□□□□ -0.99
SYNE2-228ENST00000639659 NPYP01303 97 aa8.88□□□□□ -0.99
SYNE2-228ENST00000639659 IFI27P40305 119 aaPredicted RBP8.88□□□□□ -0.99
SYNE2-228ENST00000639659 AKAP14Q86UN6 197 aa8.88□□□□□ -0.99
SYNE2-228ENST00000639659 CTDSP1Q9GZU7 261 aa8.88□□□□□ -0.99
SYNE2-228ENST00000639659 KRTAP9-6A0A140TA67 174 aa8.87□□□□□ -0.99
SYNE2-228ENST00000639659 PRSS2P07478 247 aa8.87□□□□□ -0.99
SYNE2-228ENST00000639659 ADIRFQ15847 76 aa8.87□□□□□ -0.99
SYNE2-228ENST00000639659 TYMSOSQ8TAI1 123 aa8.87□□□□□ -0.99
SYNE2-228ENST00000639659 RETNLBQ9BQ08 111 aa8.87□□□□□ -0.99
SYNE2-228ENST00000639659 XAGE1AQ9HD64 81 aa8.87□□□□□ -0.99
SYNE2-228ENST00000639659 FAT4Q6V0I7 4981 aa8.86□□□□□ -0.99
SYNE2-228ENST00000639659 TRBV24-1A0A075B6N3 115 aa8.86□□□□□ -0.99
SYNE2-228ENST00000639659 A0A087X002 238 aa8.86□□□□□ -0.99
SYNE2-228ENST00000639659 NUPR1O60356 82 aa8.86□□□□□ -0.99
SYNE2-228ENST00000639659 RPL32P62910 135 aaKnown RBP8.86□□□□□ -0.99
SYNE2-228ENST00000639659 FAM74A3Q4VXF1 159 aa8.86□□□□□ -0.99
SYNE2-228ENST00000639659 LINC00242Q5T6M2 205 aa8.86□□□□□ -0.99
SYNE2-228ENST00000639659 MRPL54Q6P161 138 aaKnown RBP8.86□□□□□ -0.99
SYNE2-228ENST00000639659 C22orf24Q9Y442 160 aa8.86□□□□□ -0.99
SYNE2-228ENST00000639659 SRP19P09132 144 aaKnown RBP8.85□□□□□ -0.99
SYNE2-228ENST00000639659 RAB5AP20339 215 aa8.85□□□□□ -0.99
SYNE2-228ENST00000639659 CKS1BP61024 79 aa8.85□□□□□ -0.99
SYNE2-228ENST00000639659 IGLV4-3A0A075B6K6 122 aa8.84□□□□□ -0.99
SYNE2-228ENST00000639659 A0A1B0GVG6 124 aa8.84□□□□□ -0.99
SYNE2-228ENST00000639659 CRYGAP11844 174 aa8.84□□□□□ -0.99
SYNE2-228ENST00000639659 LBHQ53QV2 105 aaPredicted RBP8.84□□□□□ -0.99
SYNE2-228ENST00000639659 LCE2AQ5TA79 106 aaPredicted RBP8.84□□□□□ -0.99
SYNE2-228ENST00000639659 TEX43Q6ZNM6 134 aa8.84□□□□□ -0.99
SYNE2-228ENST00000639659 TMEM141Q96I45 108 aa8.84□□□□□ -0.99
SYNE2-228ENST00000639659 RPL28P46779 137 aaKnown RBP8.83□□□□□ -1
SYNE2-228ENST00000639659 RPL23P62829 140 aaKnown RBP8.83□□□□□ -1
SYNE2-228ENST00000639659 ZC2HC1BQ5TFG8 222 aa8.83□□□□□ -1
SYNE2-228ENST00000639659 C2orf88Q9BSF0 95 aa8.83□□□□□ -1
SYNE2-228ENST00000639659 ANAPC11Q9NYG5 84 aa8.83□□□□□ -1
SYNE2-228ENST00000639659 A0A1B0GW15 77 aa8.82□□□□□ -1
SYNE2-228ENST00000639659 SMIM27A0A1W2PRY6 76 aa8.82□□□□□ -1
SYNE2-228ENST00000639659 F8W036 122 aa8.82□□□□□ -1
SYNE2-228ENST00000639659 C6orf226Q5I0X4 101 aa8.81□□□□□ -1
SYNE2-228ENST00000639659 CDIP1Q9H305 208 aa8.81□□□□□ -1
SYNE2-228ENST00000639659 LOC389332A0A1B0GUA5 103 aa8.8□□□□□ -1
SYNE2-228ENST00000639659 RPL37AP8A6NKH3 93 aa8.8□□□□□ -1
SYNE2-228ENST00000639659 BCE1O60756 84 aa8.8□□□□□ -1
SYNE2-228ENST00000639659 S100A8P05109 93 aa8.8□□□□□ -1
SYNE2-228ENST00000639659 Q6ZN92 141 aa8.8□□□□□ -1
SYNE2-228ENST00000639659 MRPL55Q7Z7F7 128 aaKnown RBP8.8□□□□□ -1
SYNE2-228ENST00000639659 ALKBH7Q9BT30 221 aaPredicted RBP8.8□□□□□ -1
SYNE2-228ENST00000639659 ORMDL3Q8N138 153 aa8.79□□□□□ -1
SYNE2-228ENST00000639659 PRELID3AQ96N28 172 aa8.79□□□□□ -1
SYNE2-228ENST00000639659 PYGO1Q9Y3Y4 419 aa8.79□□□□□ -1
SYNE2-228ENST00000639659 GAGE10A6NGK3 116 aa8.78□□□□□ -1
SYNE2-228ENST00000639659 PPBPP02775 128 aa8.78□□□□□ -1
SYNE2-228ENST00000639659 NAT8Q9UHE5 227 aa8.78□□□□□ -1
SYNE2-228ENST00000639659 TMEM136Q6ZRR5 245 aa8.77□□□□□ -1.01
SYNE2-228ENST00000639659 LINC01561Q8N1V8 128 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms