RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 IGLV7-43P04211 117 aa11.77□□□□□ -0.53
CLN3-262ENST00000637699 TRBV24-1A0A075B6N3 115 aa11.76□□□□□ -0.53
CLN3-262ENST00000637699 CKS2P33552 79 aa11.76□□□□□ -0.53
CLN3-262ENST00000637699 HBBP68871 147 aa11.76□□□□□ -0.53
CLN3-262ENST00000637699 SPAG11BQ08648 103 aa11.76□□□□□ -0.53
CLN3-262ENST00000637699 UBE2D4Q9Y2X8 147 aa11.76□□□□□ -0.53
CLN3-262ENST00000637699 A0A087WZ39 114 aa11.75□□□□□ -0.53
CLN3-262ENST00000637699 PPP1R2P9O14990 202 aa11.75□□□□□ -0.53
CLN3-262ENST00000637699 KIR2DL4Q99706 377 aa11.75□□□□□ -0.53
CLN3-262ENST00000637699 C20orf78Q9BR46 151 aa11.75□□□□□ -0.53
CLN3-262ENST00000637699 CSDC2Q9Y534 153 aaKnown RBP11.75□□□□□ -0.53
CLN3-262ENST00000637699 D6R8Y8 96 aa11.74□□□□□ -0.53
CLN3-262ENST00000637699 TNFRSF6BO95407 300 aa11.74□□□□□ -0.53
CLN3-262ENST00000637699 S100A1P23297 94 aa11.74□□□□□ -0.53
CLN3-262ENST00000637699 RNF151Q2KHN1 245 aa11.74□□□□□ -0.53
CLN3-262ENST00000637699 Q6ZUT4 128 aa11.74□□□□□ -0.53
CLN3-262ENST00000637699 FAM168BA1KXE4 195 aa11.73□□□□□ -0.53
CLN3-262ENST00000637699 F8W036 122 aa11.73□□□□□ -0.53
CLN3-262ENST00000637699 H0Y9J4 135 aa11.73□□□□□ -0.53
CLN3-262ENST00000637699 S100A8P05109 93 aa11.73□□□□□ -0.53
CLN3-262ENST00000637699 SMAGPQ0VAQ4 97 aa11.73□□□□□ -0.53
CLN3-262ENST00000637699 KRTAP11-1Q8IUC1 163 aa11.73□□□□□ -0.53
CLN3-262ENST00000637699 SLC7A5P1Q8MH63 180 aa11.73□□□□□ -0.53
CLN3-262ENST00000637699 NPYP01303 97 aa11.72□□□□□ -0.53
CLN3-262ENST00000637699 RPL32P62910 135 aaKnown RBP11.72□□□□□ -0.53
CLN3-262ENST00000637699 PNRC1Q12796 327 aaPredicted RBP11.7□□□□□ -0.54
CLN3-262ENST00000637699 PRR4Q16378 134 aa11.7□□□□□ -0.54
CLN3-262ENST00000637699 ATP5L2Q7Z4Y8 100 aa11.7□□□□□ -0.54
CLN3-262ENST00000637699 OR10D4PQ8NGN7 298 aa11.7□□□□□ -0.54
CLN3-262ENST00000637699 ORAOV1Q8WV07 137 aa11.7□□□□□ -0.54
CLN3-262ENST00000637699 SMIM2Q9BVW6 85 aa11.7□□□□□ -0.54
CLN3-262ENST00000637699 MRPL35Q9NZE8 188 aaKnown RBP11.7□□□□□ -0.54
CLN3-262ENST00000637699 IGLV1-50A0A075B6I6 118 aa11.69□□□□□ -0.54
CLN3-262ENST00000637699 RPL39P62891 51 aaKnown RBP11.69□□□□□ -0.54
CLN3-262ENST00000637699 FAM19A5Q7Z5A7 132 aaPredicted RBP11.69□□□□□ -0.54
CLN3-262ENST00000637699 IMMP2LQ96T52 175 aa11.69□□□□□ -0.54
CLN3-262ENST00000637699 TIMM21Q9BVV7 248 aa11.69□□□□□ -0.54
CLN3-262ENST00000637699 TCAPO15273 167 aa11.68□□□□□ -0.54
CLN3-262ENST00000637699 PPBPP02775 128 aa11.68□□□□□ -0.54
CLN3-262ENST00000637699 MT-ND4LP03901 98 aa11.68□□□□□ -0.54
CLN3-262ENST00000637699 C10orf25Q5T742 122 aa11.68□□□□□ -0.54
CLN3-262ENST00000637699 FAM104AQ969W3 186 aa11.68□□□□□ -0.54
CLN3-262ENST00000637699 TMEM18Q96B42 140 aa11.68□□□□□ -0.54
CLN3-262ENST00000637699 ANAPC16Q96DE5 110 aa11.68□□□□□ -0.54
CLN3-262ENST00000637699 KRTAP1-4P0C5Y4 121 aa11.67□□□□□ -0.54
CLN3-262ENST00000637699 TMEM136Q6ZRR5 245 aa11.67□□□□□ -0.54
CLN3-262ENST00000637699 ORMDL3Q8N138 153 aa11.67□□□□□ -0.54
CLN3-262ENST00000637699 NDUFA1O15239 70 aa11.66□□□□□ -0.54
CLN3-262ENST00000637699 UBE2D1P51668 147 aa11.66□□□□□ -0.54
CLN3-262ENST00000637699 GAGE2EQ4V326 116 aa11.66□□□□□ -0.54
CLN3-262ENST00000637699 UNQ6190/PRO20217Q6UXQ8 127 aa11.66□□□□□ -0.54
CLN3-262ENST00000637699 COMMD7Q86VX2 200 aa11.66□□□□□ -0.54
CLN3-262ENST00000637699 PRELID3AQ96N28 172 aa11.66□□□□□ -0.54
CLN3-262ENST00000637699 GAGE2DQ9UEU5 116 aa11.66□□□□□ -0.54
CLN3-262ENST00000637699 F8WDY8 70 aa11.64□□□□□ -0.55
CLN3-262ENST00000637699 C6orf48Q9UBA6 75 aa11.64□□□□□ -0.55
CLN3-262ENST00000637699 IGHV3OR16-9A0A0B4J2B5 98 aa11.63□□□□□ -0.55
CLN3-262ENST00000637699 TLX1NBP0CAT3 122 aa11.63□□□□□ -0.55
CLN3-262ENST00000637699 UBE2BP63146 152 aa11.63□□□□□ -0.55
CLN3-262ENST00000637699 KRTAP7-1Q8IUC3 87 aa11.63□□□□□ -0.55
CLN3-262ENST00000637699 ADCYAP1P18509 176 aa11.62□□□□□ -0.55
CLN3-262ENST00000637699 LOC389332A0A1B0GUA5 103 aa11.61□□□□□ -0.55
CLN3-262ENST00000637699 PRSS47A8MTI9 375 aa11.61□□□□□ -0.55
CLN3-262ENST00000637699 M0QXV9 152 aa11.61□□□□□ -0.55
CLN3-262ENST00000637699 UQCC3Q6UW78 93 aa11.61□□□□□ -0.55
CLN3-262ENST00000637699 SPANXA1Q9NS26 97 aa11.61□□□□□ -0.55
CLN3-262ENST00000637699 IFITM10A6NMD0 228 aa11.6□□□□□ -0.55
CLN3-262ENST00000637699 RPL13AP40429 203 aaKnown RBP11.6□□□□□ -0.55
CLN3-262ENST00000637699 MRPS36P82909 103 aaKnown RBP11.6□□□□□ -0.55
CLN3-262ENST00000637699 KRTAP9-2Q9BYQ4 174 aa11.6□□□□□ -0.55
CLN3-262ENST00000637699 A0A0U1RQV1 116 aa11.59□□□□□ -0.55
CLN3-262ENST00000637699 TMEM218A2RU14 115 aa11.59□□□□□ -0.55
CLN3-262ENST00000637699 RAB5AP20339 215 aa11.59□□□□□ -0.55
CLN3-262ENST00000637699 LAMTOR2Q9Y2Q5 125 aa11.59□□□□□ -0.55
CLN3-262ENST00000637699 MAP1LC3AQ9H492 121 aa11.57□□□□□ -0.56
CLN3-262ENST00000637699 KIAA0087Q14695 138 aa11.56□□□□□ -0.56
CLN3-262ENST00000637699 Q8N8P6 123 aa11.56□□□□□ -0.56
CLN3-262ENST00000637699 PYGO1Q9Y3Y4 419 aa11.56□□□□□ -0.56
CLN3-262ENST00000637699 TGIF2-C20orf24A0A0A6YYL0 155 aa11.55□□□□□ -0.56
CLN3-262ENST00000637699 TSPAN13O95857 204 aa11.55□□□□□ -0.56
CLN3-262ENST00000637699 C2orf82Q6UX34 121 aa11.55□□□□□ -0.56
CLN3-262ENST00000637699 IGLV4-3A0A075B6K6 122 aa11.54□□□□□ -0.56
CLN3-262ENST00000637699 IFI27P40305 119 aaPredicted RBP11.54□□□□□ -0.56
CLN3-262ENST00000637699 C9orf129Q5T035 196 aaKnown RBP11.54□□□□□ -0.56
CLN3-262ENST00000637699 CARHSP1Q9Y2V2 147 aaKnown RBP11.54□□□□□ -0.56
CLN3-262ENST00000637699 NDUFC2-KCTD14E9PQ53 114 aa11.53□□□□□ -0.56
CLN3-262ENST00000637699 SEC11CQ9BY50 192 aa11.53□□□□□ -0.56
CLN3-262ENST00000637699 CTDSP1Q9GZU7 261 aa11.53□□□□□ -0.56
CLN3-262ENST00000637699 TRBV30A0A0K0K1B3 111 aa11.52□□□□□ -0.57
CLN3-262ENST00000637699 KIAA1644Q3SXP7 199 aa11.52□□□□□ -0.57
CLN3-262ENST00000637699 TMEM141Q96I45 108 aa11.52□□□□□ -0.57
CLN3-262ENST00000637699 PACRGQ96M98 296 aaPredicted RBP11.52□□□□□ -0.57
CLN3-262ENST00000637699 FAT4Q6V0I7 4981 aa11.51□□□□□ -0.57
CLN3-262ENST00000637699 ZNF861PO60384 105 aa11.51□□□□□ -0.57
CLN3-262ENST00000637699 C2orf66Q6UXQ4 117 aa11.51□□□□□ -0.57
CLN3-262ENST00000637699 LINC00242Q5T6M2 205 aa11.5□□□□□ -0.57
CLN3-262ENST00000637699 ZC2HC1BQ5TFG8 222 aa11.5□□□□□ -0.57
CLN3-262ENST00000637699 CYSLTR1Q9Y271 337 aa11.5□□□□□ -0.57
CLN3-262ENST00000637699 ORMDL2Q53FV1 153 aa11.49□□□□□ -0.57
CLN3-262ENST00000637699 TRAV9-1A0A075B6T8 112 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms