RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 MRPS25P82663 173 aaKnown RBP-3.06□□□□□ -2.9
SCN1A-215ENST00000637285 FRYQ5TBA9 3013 aa-3.06□□□□□ -2.9
SCN1A-215ENST00000637285 AKAP14Q86UN6 197 aa-3.06□□□□□ -2.9
SCN1A-215ENST00000637285 TTC9CQ8N5M4 171 aa-3.06□□□□□ -2.9
SCN1A-215ENST00000637285 OR9Q1Q8NGQ5 310 aa-3.06□□□□□ -2.9
SCN1A-215ENST00000637285 MAGOHBQ96A72 148 aaKnown RBP-3.06□□□□□ -2.9
SCN1A-215ENST00000637285 LINC01600Q96MT4 127 aa-3.06□□□□□ -2.9
SCN1A-215ENST00000637285 CICQ96RK0 1608 aaPredicted RBP-3.06□□□□□ -2.9
SCN1A-215ENST00000637285 COL6A5A8TX70 2615 aa-3.06□□□□□ -2.9
SCN1A-215ENST00000637285 SYNMO15061 1565 aa-3.07□□□□□ -2.9
SCN1A-215ENST00000637285 SPAARA0A1B0GVQ0 90 aa-3.07□□□□□ -2.9
SCN1A-215ENST00000637285 M0R129 80 aa-3.07□□□□□ -2.9
SCN1A-215ENST00000637285 LELP1Q5T871 98 aa-3.07□□□□□ -2.9
SCN1A-215ENST00000637285 MNS1Q8NEH6 495 aa-3.07□□□□□ -2.9
SCN1A-215ENST00000637285 CHD7Q9P2D1 2997 aa-3.08□□□□□ -2.9
SCN1A-215ENST00000637285 B2MP61769 119 aa-3.08□□□□□ -2.9
SCN1A-215ENST00000637285 WFDC13Q8IUB5 93 aa-3.08□□□□□ -2.9
SCN1A-215ENST00000637285 SAR1AQ9NR31 198 aa-3.08□□□□□ -2.9
SCN1A-215ENST00000637285 CDC42SE2Q9NRR3 84 aa-3.08□□□□□ -2.9
SCN1A-215ENST00000637285 RIMS1Q86UR5 1692 aaKnown RBP-3.08□□□□□ -2.9
SCN1A-215ENST00000637285 C5orf42Q9H799 3197 aa-3.08□□□□□ -2.9
SCN1A-215ENST00000637285 TRAV30A0A087WSZ9 112 aa-3.09□□□□□ -2.9
SCN1A-215ENST00000637285 TMEM35BQ8NCS4 154 aa-3.09□□□□□ -2.9
SCN1A-215ENST00000637285 SPTSSAQ969W0 71 aa-3.09□□□□□ -2.9
SCN1A-215ENST00000637285 HOPXQ9BPY8 73 aaPredicted RBP-3.09□□□□□ -2.9
SCN1A-215ENST00000637285 CCDC141Q6ZP82 1450 aa-3.09□□□□□ -2.9
SCN1A-215ENST00000637285 TRAV13-2A0A0B4J235 113 aa-3.1□□□□□ -2.91
SCN1A-215ENST00000637285 MGPP08493 103 aa-3.1□□□□□ -2.91
SCN1A-215ENST00000637285 UBA52P62987 128 aaKnown RBP-3.1□□□□□ -2.91
SCN1A-215ENST00000637285 BTG2P78543 158 aa-3.1□□□□□ -2.91
SCN1A-215ENST00000637285 BOLA2Q9H3K6 86 aa-3.1□□□□□ -2.91
SCN1A-215ENST00000637285 IFT140Q96RY7 1462 aa-3.1□□□□□ -2.91
SCN1A-215ENST00000637285 MYH13Q9UKX3 1938 aa-3.11□□□□□ -2.91
SCN1A-215ENST00000637285 SYNJ1O43426 1573 aa-3.11□□□□□ -2.91
SCN1A-215ENST00000637285 SFT2D2O95562 160 aa-3.11□□□□□ -2.91
SCN1A-215ENST00000637285 NCS1P62166 190 aa-3.11□□□□□ -2.91
SCN1A-215ENST00000637285 TAC4Q86UU9 113 aa-3.11□□□□□ -2.91
SCN1A-215ENST00000637285 TCTE3Q8IZS6 198 aa-3.11□□□□□ -2.91
SCN1A-215ENST00000637285 PSMG3Q9BT73 122 aaPredicted RBP-3.11□□□□□ -2.91
SCN1A-215ENST00000637285 COL14A1Q05707 1796 aaKnown RBP-3.11□□□□□ -2.91
SCN1A-215ENST00000637285 TMEM2Q9UHN6 1383 aa-3.12□□□□□ -2.91
SCN1A-215ENST00000637285 NDUFB6O95139 128 aa-3.12□□□□□ -2.91
SCN1A-215ENST00000637285 RRAS2P62070 204 aaPredicted RBP-3.12□□□□□ -2.91
SCN1A-215ENST00000637285 KRTAP19-5Q3LI72 72 aa-3.12□□□□□ -2.91
SCN1A-215ENST00000637285 CDKN2A-AS1Q9UH64 79 aa-3.12□□□□□ -2.91
SCN1A-215ENST00000637285 S4R3F8 94 aa-3.12□□□□□ -2.91
SCN1A-215ENST00000637285 BTAF1O14981 1849 aa-3.12□□□□□ -2.91
SCN1A-215ENST00000637285 DNAH8Q96JB1 4490 aa-3.13□□□□□ -2.91
SCN1A-215ENST00000637285 MT1HL1P0DM35 61 aa-3.13□□□□□ -2.91
SCN1A-215ENST00000637285 DEFB110Q30KQ9 67 aa-3.13□□□□□ -2.91
SCN1A-215ENST00000637285 DYNLRB1Q9NP97 96 aa-3.13□□□□□ -2.91
SCN1A-215ENST00000637285 PPIP5K1Q6PFW1 1433 aa-3.13□□□□□ -2.91
SCN1A-215ENST00000637285 Q6ZUT4 128 aa-3.14□□□□□ -2.91
SCN1A-215ENST00000637285 LCN9Q8WX39 176 aa-3.14□□□□□ -2.91
SCN1A-215ENST00000637285 ATPIF1Q9UII2 106 aa-3.14□□□□□ -2.91
SCN1A-215ENST00000637285 EIF3AQ14152 1382 aaKnown RBP-3.14□□□□□ -2.91
SCN1A-215ENST00000637285 HMGN4O00479 90 aa-3.15□□□□□ -2.91
SCN1A-215ENST00000637285 CMPK1P30085 196 aa-3.15□□□□□ -2.91
SCN1A-215ENST00000637285 SAMD13Q5VXD3 122 aa-3.15□□□□□ -2.91
SCN1A-215ENST00000637285 SPRR4Q96PI1 79 aa-3.15□□□□□ -2.91
SCN1A-215ENST00000637285 MRPL34Q9BQ48 92 aaKnown RBP-3.15□□□□□ -2.91
SCN1A-215ENST00000637285 FAIMQ9NVQ4 179 aa-3.15□□□□□ -2.91
SCN1A-215ENST00000637285 CCL22O00626 93 aa-3.16□□□□□ -2.92
SCN1A-215ENST00000637285 TNFSF15O95150 251 aa-3.16□□□□□ -2.92
SCN1A-215ENST00000637285 TRIQKQ629K1 86 aa-3.16□□□□□ -2.92
SCN1A-215ENST00000637285 FAM167A-AS1Q96KT0 104 aa-3.16□□□□□ -2.92
SCN1A-215ENST00000637285 A0A0G2JMZ2 1700 aa-3.16□□□□□ -2.92
SCN1A-215ENST00000637285 MARF1Q9Y4F3 1742 aaKnown RBP-3.16□□□□□ -2.92
SCN1A-215ENST00000637285 RPS28P62857 69 aaKnown RBP-3.17□□□□□ -2.92
SCN1A-215ENST00000637285 SEC11AP67812 179 aa-3.17□□□□□ -2.92
SCN1A-215ENST00000637285 MGST2Q99735 147 aa-3.17□□□□□ -2.92
SCN1A-215ENST00000637285 GID8Q9NWU2 228 aa-3.17□□□□□ -2.92
SCN1A-215ENST00000637285 HIGD1AQ9Y241 93 aa-3.17□□□□□ -2.92
SCN1A-215ENST00000637285 DOCK2Q92608 1830 aa-3.17□□□□□ -2.92
SCN1A-215ENST00000637285 ARAP2Q8WZ64 1704 aa-3.18□□□□□ -2.92
SCN1A-215ENST00000637285 FAM236AA0A1B0GUQ0 79 aa-3.18□□□□□ -2.92
SCN1A-215ENST00000637285 FAM236BA0A1B0GV22 79 aa-3.18□□□□□ -2.92
SCN1A-215ENST00000637285 SCTP09683 121 aa-3.18□□□□□ -2.92
SCN1A-215ENST00000637285 IGLC1P0CG04 106 aa-3.18□□□□□ -2.92
SCN1A-215ENST00000637285 HIST1H1AQ02539 215 aaPredicted RBP-3.18□□□□□ -2.92
SCN1A-215ENST00000637285 TMEM128Q5BJH2 165 aa-3.18□□□□□ -2.92
SCN1A-215ENST00000637285 TOMM20LQ6UXN7 152 aa-3.18□□□□□ -2.92
SCN1A-215ENST00000637285 HIGD1BQ9P298 99 aa-3.18□□□□□ -2.92
SCN1A-215ENST00000637285 PRG4Q92954 1404 aaPredicted RBP-3.19□□□□□ -2.92
SCN1A-215ENST00000637285 KNDC1Q76NI1 1749 aa-3.19□□□□□ -2.92
SCN1A-215ENST00000637285 ZNF518AQ6AHZ1 1483 aa-3.19□□□□□ -2.92
SCN1A-215ENST00000637285 TRAV36DV7A0A075B6V5 113 aa-3.19□□□□□ -2.92
SCN1A-215ENST00000637285 LOC100130705A0A1B0GUX0 176 aa-3.19□□□□□ -2.92
SCN1A-215ENST00000637285 PRO1933Q9H354 126 aa-3.19□□□□□ -2.92
SCN1A-215ENST00000637285 ZFHX3Q15911 3703 aa-3.19□□□□□ -2.92
SCN1A-215ENST00000637285 MAP3K1Q13233 1512 aa-3.19□□□□□ -2.92
SCN1A-215ENST00000637285 C1orf167Q5SNV9 1468 aa-3.2□□□□□ -2.92
SCN1A-215ENST00000637285 LOC285095A0A1B0GVY8 99 aa-3.2□□□□□ -2.92
SCN1A-215ENST00000637285 MRPL54Q6P161 138 aaKnown RBP-3.2□□□□□ -2.92
SCN1A-215ENST00000637285 ANKRD30AQ9BXX3 1397 aa-3.21□□□□□ -2.92
SCN1A-215ENST00000637285 HIST1H1DP16402 221 aaKnown RBP-3.21□□□□□ -2.92
SCN1A-215ENST00000637285 MMGT1Q8N4V1 131 aa-3.21□□□□□ -2.92
SCN1A-215ENST00000637285 NXT2Q9NPJ8 142 aaKnown RBP-3.21□□□□□ -2.92
SCN1A-215ENST00000637285 SRCAPQ6ZRS2 3230 aa-3.22□□□□□ -2.92
SCN1A-215ENST00000637285 TSLPQ969D9 159 aa-3.22□□□□□ -2.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms