RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 HERVK_113P61574 105 aa12.86□□□□□ -0.35
CLN3-258ENST00000637184 ANKRD39Q53RE8 183 aa12.86□□□□□ -0.35
CLN3-258ENST00000637184 CDKN2A-AS1Q9UH64 79 aa12.86□□□□□ -0.35
CLN3-258ENST00000637184 XCL1P47992 114 aa12.86□□□□□ -0.35
CLN3-258ENST00000637184 IGLV10-54A0A075B6I4 117 aa12.85□□□□□ -0.35
CLN3-258ENST00000637184 TMEM223A0PJW6 202 aa12.85□□□□□ -0.35
CLN3-258ENST00000637184 H3BRM9 83 aa12.85□□□□□ -0.35
CLN3-258ENST00000637184 MIAQ16674 131 aa12.84□□□□□ -0.35
CLN3-258ENST00000637184 TRAV8-4A0A0B4J246 113 aa12.84□□□□□ -0.35
CLN3-258ENST00000637184 CHCHD10Q8WYQ3 142 aaPredicted RBP12.84□□□□□ -0.35
CLN3-258ENST00000637184 IGHV3OR16-9A0A0B4J2B5 98 aa12.83□□□□□ -0.36
CLN3-258ENST00000637184 C10orf126Q8N4M7 172 aa12.83□□□□□ -0.36
CLN3-258ENST00000637184 E9PLD3 99 aa12.82□□□□□ -0.36
CLN3-258ENST00000637184 NMUP48645 174 aa12.82□□□□□ -0.36
CLN3-258ENST00000637184 LYSTQ99698 3801 aa12.82□□□□□ -0.36
CLN3-258ENST00000637184 IGKV2D-26A0A0A0MRZ7 120 aa12.81□□□□□ -0.36
CLN3-258ENST00000637184 K7EP13 123 aa12.81□□□□□ -0.36
CLN3-258ENST00000637184 SPINK8P0C7L1 97 aa12.81□□□□□ -0.36
CLN3-258ENST00000637184 CD164L2Q6UWJ8 174 aa12.81□□□□□ -0.36
CLN3-258ENST00000637184 PRO1933Q9H354 126 aa12.81□□□□□ -0.36
CLN3-258ENST00000637184 IGHV3-64A0A075B6Q5 118 aa12.81□□□□□ -0.36
CLN3-258ENST00000637184 IBA57-AS1B1ANH7 110 aa12.81□□□□□ -0.36
CLN3-258ENST00000637184 CASC10Q5T4H9 136 aa12.81□□□□□ -0.36
CLN3-258ENST00000637184 C3orf84H3BNL1 204 aa12.8□□□□□ -0.36
CLN3-258ENST00000637184 C14orf144Q96I85 54 aa12.8□□□□□ -0.36
CLN3-258ENST00000637184 A0A087WZ39 114 aa12.79□□□□□ -0.36
CLN3-258ENST00000637184 TRAV8-3A0A0A6YYJ7 113 aa12.79□□□□□ -0.36
CLN3-258ENST00000637184 TSTD3H0UI37 97 aa12.79□□□□□ -0.36
CLN3-258ENST00000637184 C5orf38Q86SI9 138 aa12.79□□□□□ -0.36
CLN3-258ENST00000637184 IGHV1-58A0A0C4DH39 117 aa12.79□□□□□ -0.36
CLN3-258ENST00000637184 GAGE12HA6NDE8 117 aa12.79□□□□□ -0.36
CLN3-258ENST00000637184 SMIM1B2RUZ4 78 aa12.78□□□□□ -0.36
CLN3-258ENST00000637184 Q9HAA7 133 aa12.78□□□□□ -0.36
CLN3-258ENST00000637184 COX7A2LO14548 114 aa12.77□□□□□ -0.36
CLN3-258ENST00000637184 LEPROTO15243 131 aa12.77□□□□□ -0.36
CLN3-258ENST00000637184 COX8AP10176 69 aa12.77□□□□□ -0.36
CLN3-258ENST00000637184 FOXI1Q12951 378 aa12.77□□□□□ -0.36
CLN3-258ENST00000637184 C1orf43Q9BWL3 253 aa12.77□□□□□ -0.36
CLN3-258ENST00000637184 PLEKHB2Q96CS7 222 aa12.76□□□□□ -0.37
CLN3-258ENST00000637184 IGKV2D-24A0A075B6R9 120 aa12.76□□□□□ -0.37
CLN3-258ENST00000637184 PCP2Q8IVA1 136 aa12.76□□□□□ -0.37
CLN3-258ENST00000637184 IGLV5-39A0A0G2JS06 123 aa12.75□□□□□ -0.37
CLN3-258ENST00000637184 J3QQQ9 107 aa12.75□□□□□ -0.37
CLN3-258ENST00000637184 LGALS3P17931 250 aaKnown RBP12.75□□□□□ -0.37
CLN3-258ENST00000637184 MALP21145 153 aa12.75□□□□□ -0.37
CLN3-258ENST00000637184 LINC01561Q8N1V8 128 aa12.75□□□□□ -0.37
CLN3-258ENST00000637184 TTTY13Q9BZ97 58 aa12.75□□□□□ -0.37
CLN3-258ENST00000637184 SLC25A34Q6PIV7 304 aa12.74□□□□□ -0.37
CLN3-258ENST00000637184 UQCR10Q9UDW1 63 aa12.74□□□□□ -0.37
CLN3-258ENST00000637184 TSPEAR-AS2P59090 65 aa12.74□□□□□ -0.37
CLN3-258ENST00000637184 DNAH1Q9P2D7 4330 aa12.73□□□□□ -0.37
CLN3-258ENST00000637184 TTC32Q5I0X7 151 aa12.73□□□□□ -0.37
CLN3-258ENST00000637184 KRTAP26-1Q6PEX3 210 aa12.73□□□□□ -0.37
CLN3-258ENST00000637184 BOD1L2Q8IYS8 172 aa12.73□□□□□ -0.37
CLN3-258ENST00000637184 RMI2Q96E14 147 aa12.73□□□□□ -0.37
CLN3-258ENST00000637184 KRTAP1-5Q9BYS1 174 aa12.73□□□□□ -0.37
CLN3-258ENST00000637184 VPS13DQ5THJ4 4388 aa12.73□□□□□ -0.37
CLN3-258ENST00000637184 MIEN1Q9BRT3 115 aa12.72□□□□□ -0.37
CLN3-258ENST00000637184 NBDYA0A0U1RRE5 68 aa12.71□□□□□ -0.37
CLN3-258ENST00000637184 MAPKAPK5-AS1Q8N8E1 139 aa12.71□□□□□ -0.37
CLN3-258ENST00000637184 ZNF815PA8K554 130 aa12.71□□□□□ -0.38
CLN3-258ENST00000637184 DLEU1O43261 78 aa12.71□□□□□ -0.38
CLN3-258ENST00000637184 TOMM7Q9P0U1 55 aa12.71□□□□□ -0.38
CLN3-258ENST00000637184 TP73-AS1Q9UF72 201 aa12.71□□□□□ -0.38
CLN3-258ENST00000637184 MYMXA0A1B0GTQ4 84 aa12.7□□□□□ -0.38
CLN3-258ENST00000637184 APOMO95445 188 aa12.7□□□□□ -0.38
CLN3-258ENST00000637184 PCP4L1A6NKN8 68 aa12.69□□□□□ -0.38
CLN3-258ENST00000637184 COX7B2Q8TF08 81 aa12.69□□□□□ -0.38
CLN3-258ENST00000637184 COX11Q9Y6N1 276 aa12.69□□□□□ -0.38
CLN3-258ENST00000637184 LY6G6CO95867 125 aa12.68□□□□□ -0.38
CLN3-258ENST00000637184 ORAOV1Q8WV07 137 aa12.68□□□□□ -0.38
CLN3-258ENST00000637184 NDUFA12Q9UI09 145 aa12.68□□□□□ -0.38
CLN3-258ENST00000637184 PRSS2P07478 247 aa12.67□□□□□ -0.38
CLN3-258ENST00000637184 LINC00476Q8WZB0 136 aa12.66□□□□□ -0.38
CLN3-258ENST00000637184 DDTP30046 118 aa12.66□□□□□ -0.38
CLN3-258ENST00000637184 C6orf226Q5I0X4 101 aa12.66□□□□□ -0.38
CLN3-258ENST00000637184 Q8IZM0 81 aa12.66□□□□□ -0.38
CLN3-258ENST00000637184 TM2D2Q9BX73 214 aa12.66□□□□□ -0.38
CLN3-258ENST00000637184 HNRNPA3P51991 378 aaKnown RBP12.65□□□□□ -0.38
CLN3-258ENST00000637184 M0R2N4 97 aa12.64□□□□□ -0.39
CLN3-258ENST00000637184 NDUFA1O15239 70 aa12.64□□□□□ -0.39
CLN3-258ENST00000637184 SCGB1D4Q6XE38 83 aa12.64□□□□□ -0.39
CLN3-258ENST00000637184 SPAG11BQ08648 103 aa12.63□□□□□ -0.39
CLN3-258ENST00000637184 CFAP161Q6P656 301 aa12.63□□□□□ -0.39
CLN3-258ENST00000637184 C2orf91Q6ZV80 131 aa12.62□□□□□ -0.39
CLN3-258ENST00000637184 KIAA0087Q14695 138 aa12.61□□□□□ -0.39
CLN3-258ENST00000637184 ZNF625Q96I27 306 aaPredicted RBP12.61□□□□□ -0.39
CLN3-258ENST00000637184 PSCAO43653 123 aa12.61□□□□□ -0.39
CLN3-258ENST00000637184 CKS1BP61024 79 aa12.61□□□□□ -0.39
CLN3-258ENST00000637184 C15orf56Q8N910 161 aa12.61□□□□□ -0.39
CLN3-258ENST00000637184 CXCL5P42830 114 aa12.6□□□□□ -0.39
CLN3-258ENST00000637184 HERV-K104P63124 156 aa12.6□□□□□ -0.39
CLN3-258ENST00000637184 SFTA2Q6UW10 78 aa12.6□□□□□ -0.39
CLN3-258ENST00000637184 A0A0J9YXY3 114 aa12.59□□□□□ -0.39
CLN3-258ENST00000637184 ZNF561-AS1K7EIQ3 104 aa12.59□□□□□ -0.39
CLN3-258ENST00000637184 HIGD1BQ9P298 99 aa12.59□□□□□ -0.39
CLN3-258ENST00000637184 ALMS1Q8TCU4 4167 aa12.58□□□□□ -0.39
CLN3-258ENST00000637184 HIGD2BQ4VC39 106 aa12.58□□□□□ -0.39
CLN3-258ENST00000637184 Q6ZR54 194 aa12.58□□□□□ -0.39
CLN3-258ENST00000637184 C2orf82Q6UX34 121 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms