RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 C2orf48Q96LS8 159 aa9.9□□□□□ -0.82
CLN3-246ENST00000636228 RPL39P62891 51 aaKnown RBP9.89□□□□□ -0.83
CLN3-246ENST00000636228 C1orf137Q5JT78 98 aa9.89□□□□□ -0.83
CLN3-246ENST00000636228 FAM104BQ5XKR9 115 aa9.89□□□□□ -0.83
CLN3-246ENST00000636228 PPP1R17O96001 155 aa9.88□□□□□ -0.83
CLN3-246ENST00000636228 SMAGPQ0VAQ4 97 aa9.88□□□□□ -0.83
CLN3-246ENST00000636228 NAT8BQ9UHF3 227 aa9.88□□□□□ -0.83
CLN3-246ENST00000636228 FAM104AQ969W3 186 aa9.87□□□□□ -0.83
CLN3-246ENST00000636228 TIMM21Q9BVV7 248 aa9.87□□□□□ -0.83
CLN3-246ENST00000636228 LPAP08519 4548 aa9.87□□□□□ -0.83
CLN3-246ENST00000636228 FAM168BA1KXE4 195 aa9.86□□□□□ -0.83
CLN3-246ENST00000636228 PPP1R2P9O14990 202 aa9.86□□□□□ -0.83
CLN3-246ENST00000636228 CKS2P33552 79 aa9.86□□□□□ -0.83
CLN3-246ENST00000636228 C10orf25Q5T742 122 aa9.86□□□□□ -0.83
CLN3-246ENST00000636228 KRTAP11-1Q8IUC1 163 aa9.86□□□□□ -0.83
CLN3-246ENST00000636228 ORAOV1Q8WV07 137 aa9.86□□□□□ -0.83
CLN3-246ENST00000636228 TMEM18Q96B42 140 aa9.86□□□□□ -0.83
CLN3-246ENST00000636228 RNF151Q2KHN1 245 aa9.85□□□□□ -0.83
CLN3-246ENST00000636228 TNFRSF6BO95407 300 aa9.84□□□□□ -0.83
CLN3-246ENST00000636228 UNQ6190/PRO20217Q6UXQ8 127 aa9.84□□□□□ -0.83
CLN3-246ENST00000636228 OR10D4PQ8NGN7 298 aa9.84□□□□□ -0.83
CLN3-246ENST00000636228 C20orf78Q9BR46 151 aa9.84□□□□□ -0.83
CLN3-246ENST00000636228 TRBV24-1A0A075B6N3 115 aa9.83□□□□□ -0.84
CLN3-246ENST00000636228 IGHV3OR16-9A0A0B4J2B5 98 aa9.83□□□□□ -0.84
CLN3-246ENST00000636228 SMIM27A0A1W2PRY6 76 aa9.83□□□□□ -0.84
CLN3-246ENST00000636228 TCAPO15273 167 aa9.83□□□□□ -0.84
CLN3-246ENST00000636228 MT-ND4LP03901 98 aa9.83□□□□□ -0.84
CLN3-246ENST00000636228 PRR26Q8N8Z3 221 aa9.83□□□□□ -0.84
CLN3-246ENST00000636228 ANAPC16Q96DE5 110 aa9.83□□□□□ -0.84
CLN3-246ENST00000636228 MRPL35Q9NZE8 188 aaKnown RBP9.83□□□□□ -0.84
CLN3-246ENST00000636228 A0A087WZ39 114 aa9.82□□□□□ -0.84
CLN3-246ENST00000636228 D6R8Y8 96 aa9.82□□□□□ -0.84
CLN3-246ENST00000636228 APOC3P02656 99 aa9.82□□□□□ -0.84
CLN3-246ENST00000636228 IGLV7-43P04211 117 aa9.82□□□□□ -0.84
CLN3-246ENST00000636228 MRPL54Q6P161 138 aaKnown RBP9.82□□□□□ -0.84
CLN3-246ENST00000636228 FAM19A5Q7Z5A7 132 aaPredicted RBP9.82□□□□□ -0.84
CLN3-246ENST00000636228 SMIM2Q9BVW6 85 aa9.82□□□□□ -0.84
CLN3-246ENST00000636228 IFITM10A6NMD0 228 aa9.81□□□□□ -0.84
CLN3-246ENST00000636228 NPYP01303 97 aa9.81□□□□□ -0.84
CLN3-246ENST00000636228 GAGE2EQ4V326 116 aa9.81□□□□□ -0.84
CLN3-246ENST00000636228 SVBPQ8N300 66 aa9.81□□□□□ -0.84
CLN3-246ENST00000636228 C6orf48Q9UBA6 75 aa9.81□□□□□ -0.84
CLN3-246ENST00000636228 GAGE2DQ9UEU5 116 aa9.81□□□□□ -0.84
CLN3-246ENST00000636228 NDUFA1O15239 70 aa9.8□□□□□ -0.84
CLN3-246ENST00000636228 RPL32P62910 135 aaKnown RBP9.8□□□□□ -0.84
CLN3-246ENST00000636228 RHEBQ15382 184 aa9.8□□□□□ -0.84
CLN3-246ENST00000636228 IMMP2LQ96T52 175 aa9.8□□□□□ -0.84
CLN3-246ENST00000636228 CTDSP1Q9GZU7 261 aa9.8□□□□□ -0.84
CLN3-246ENST00000636228 SPANXA1Q9NS26 97 aa9.8□□□□□ -0.84
CLN3-246ENST00000636228 SNAPINO95295 136 aa9.79□□□□□ -0.84
CLN3-246ENST00000636228 HBBP68871 147 aa9.79□□□□□ -0.84
CLN3-246ENST00000636228 KRTAP7-1Q8IUC3 87 aa9.79□□□□□ -0.84
CLN3-246ENST00000636228 A0A1B0GW15 77 aa9.78□□□□□ -0.84
CLN3-246ENST00000636228 MRPS36P82909 103 aaKnown RBP9.78□□□□□ -0.84
CLN3-246ENST00000636228 DIRC1Q969H9 104 aa9.78□□□□□ -0.84
CLN3-246ENST00000636228 A0A1B0GXF2 115 aa9.76□□□□□ -0.85
CLN3-246ENST00000636228 F8WDY8 70 aa9.76□□□□□ -0.85
CLN3-246ENST00000636228 H0Y9J4 135 aa9.76□□□□□ -0.85
CLN3-246ENST00000636228 TLX1NBP0CAT3 122 aa9.76□□□□□ -0.85
CLN3-246ENST00000636228 KIAA0087Q14695 138 aa9.76□□□□□ -0.85
CLN3-246ENST00000636228 C2orf82Q6UX34 121 aa9.76□□□□□ -0.85
CLN3-246ENST00000636228 RPS10P5Q9NQ39 176 aa9.76□□□□□ -0.85
CLN3-246ENST00000636228 TGIF2-C20orf24A0A0A6YYL0 155 aa9.75□□□□□ -0.85
CLN3-246ENST00000636228 LINC00242Q5T6M2 205 aa9.75□□□□□ -0.85
CLN3-246ENST00000636228 RAB5AP20339 215 aa9.74□□□□□ -0.85
CLN3-246ENST00000636228 UBE2BP63146 152 aa9.74□□□□□ -0.85
CLN3-246ENST00000636228 ZC2HC1BQ5TFG8 222 aa9.74□□□□□ -0.85
CLN3-246ENST00000636228 IGLV4-3A0A075B6K6 122 aa9.73□□□□□ -0.85
CLN3-246ENST00000636228 LOC389332A0A1B0GUA5 103 aa9.73□□□□□ -0.85
CLN3-246ENST00000636228 M0QXV9 152 aa9.73□□□□□ -0.85
CLN3-246ENST00000636228 S100A8P05109 93 aa9.73□□□□□ -0.85
CLN3-246ENST00000636228 IFI27P40305 119 aaPredicted RBP9.73□□□□□ -0.85
CLN3-246ENST00000636228 TMEM136Q6ZRR5 245 aa9.73□□□□□ -0.85
CLN3-246ENST00000636228 PRELID3AQ96N28 172 aa9.73□□□□□ -0.85
CLN3-246ENST00000636228 PPBPP02775 128 aa9.72□□□□□ -0.85
CLN3-246ENST00000636228 KRTAP1-4P0C5Y4 121 aa9.72□□□□□ -0.85
CLN3-246ENST00000636228 C9orf129Q5T035 196 aaKnown RBP9.72□□□□□ -0.85
CLN3-246ENST00000636228 ATP5L2Q7Z4Y8 100 aa9.72□□□□□ -0.85
CLN3-246ENST00000636228 ORMDL3Q8N138 153 aa9.72□□□□□ -0.85
CLN3-246ENST00000636228 TRAV9-1A0A075B6T8 112 aa9.71□□□□□ -0.86
CLN3-246ENST00000636228 ATP6V1G1O75348 118 aa9.7□□□□□ -0.86
CLN3-246ENST00000636228 TMEM141Q96I45 108 aa9.7□□□□□ -0.86
CLN3-246ENST00000636228 PYGO1Q9Y3Y4 419 aa9.7□□□□□ -0.86
CLN3-246ENST00000636228 TRBV30A0A0K0K1B3 111 aa9.69□□□□□ -0.86
CLN3-246ENST00000636228 NDUFC2-KCTD14E9PQ53 114 aa9.69□□□□□ -0.86
CLN3-246ENST00000636228 S100PP25815 95 aa9.69□□□□□ -0.86
CLN3-246ENST00000636228 UBE2D1P51668 147 aa9.69□□□□□ -0.86
CLN3-246ENST00000636228 PACRGQ96M98 296 aaPredicted RBP9.69□□□□□ -0.86
CLN3-246ENST00000636228 IGLV1-50A0A075B6I6 118 aa9.68□□□□□ -0.86
CLN3-246ENST00000636228 TEX43Q6ZNM6 134 aa9.68□□□□□ -0.86
CLN3-246ENST00000636228 LINC00469Q8N7U9 141 aa9.68□□□□□ -0.86
CLN3-246ENST00000636228 YPEL4Q96NS1 127 aa9.67□□□□□ -0.86
CLN3-246ENST00000636228 TOMM7Q9P0U1 55 aa9.67□□□□□ -0.86
CLN3-246ENST00000636228 S100A1P23297 94 aa9.66□□□□□ -0.86
CLN3-246ENST00000636228 PRR4Q16378 134 aa9.66□□□□□ -0.86
CLN3-246ENST00000636228 LINC00173Q6ZV60 143 aa9.66□□□□□ -0.86
CLN3-246ENST00000636228 SMCO4Q9NRQ5 59 aa9.66□□□□□ -0.86
CLN3-246ENST00000636228 MUC2Q02817 5179 aa9.65□□□□□ -0.86
CLN3-246ENST00000636228 PRSS47A8MTI9 375 aa9.65□□□□□ -0.86
CLN3-246ENST00000636228 C2orf66Q6UXQ4 117 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms