RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 TIMM17AQ99595 171 aa11.84□□□□□ -0.51
CLN3-243ENST00000635973 VCX2Q9H322 139 aa11.84□□□□□ -0.51
CLN3-243ENST00000635973 IGIPA6NJ69 53 aa11.83□□□□□ -0.52
CLN3-243ENST00000635973 COX7A2LO14548 114 aa11.82□□□□□ -0.52
CLN3-243ENST00000635973 MALP21145 153 aa11.82□□□□□ -0.52
CLN3-243ENST00000635973 ERASQ7Z444 233 aa11.82□□□□□ -0.52
CLN3-243ENST00000635973 HIGD2BQ4VC39 106 aa11.81□□□□□ -0.52
CLN3-243ENST00000635973 ZC2HC1BQ5TFG8 222 aa11.81□□□□□ -0.52
CLN3-243ENST00000635973 C15orf56Q8N910 161 aa11.81□□□□□ -0.52
CLN3-243ENST00000635973 URB1-AS1Q96HZ7 61 aa11.81□□□□□ -0.52
CLN3-243ENST00000635973 DMBT1Q9UGM3 2413 aaPredicted RBP11.81□□□□□ -0.52
CLN3-243ENST00000635973 IGHV1-58A0A0C4DH39 117 aa11.8□□□□□ -0.52
CLN3-243ENST00000635973 PMCHL1Q16048 86 aa11.8□□□□□ -0.52
CLN3-243ENST00000635973 BAGE3Q86Y29 109 aa11.8□□□□□ -0.52
CLN3-243ENST00000635973 ATP6V1G1O75348 118 aa11.79□□□□□ -0.52
CLN3-243ENST00000635973 HBDP02042 147 aa11.79□□□□□ -0.52
CLN3-243ENST00000635973 S100A1P23297 94 aa11.79□□□□□ -0.52
CLN3-243ENST00000635973 LINC00173Q6ZV60 143 aa11.79□□□□□ -0.52
CLN3-243ENST00000635973 C5orf38Q86SI9 138 aa11.79□□□□□ -0.52
CLN3-243ENST00000635973 CHCHD1Q96BP2 118 aaKnown RBP11.79□□□□□ -0.52
CLN3-243ENST00000635973 AMELXQ99217 191 aa11.79□□□□□ -0.52
CLN3-243ENST00000635973 UBE2D1P51668 147 aa11.78□□□□□ -0.52
CLN3-243ENST00000635973 FAM30AQ9NZY2 134 aa11.78□□□□□ -0.52
CLN3-243ENST00000635973 GVQW2A0A096LPI5 108 aaPredicted RBP11.77□□□□□ -0.53
CLN3-243ENST00000635973 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.77□□□□□ -0.53
CLN3-243ENST00000635973 APOMO95445 188 aa11.77□□□□□ -0.53
CLN3-243ENST00000635973 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.76□□□□□ -0.53
CLN3-243ENST00000635973 LINC01620Q4KN68 170 aa11.76□□□□□ -0.53
CLN3-243ENST00000635973 LINC00242Q5T6M2 205 aa11.76□□□□□ -0.53
CLN3-243ENST00000635973 A0A096LNJ9 63 aa11.75□□□□□ -0.53
CLN3-243ENST00000635973 ZNF561-AS1K7EIQ3 104 aa11.75□□□□□ -0.53
CLN3-243ENST00000635973 HSBP1O75506 76 aa11.75□□□□□ -0.53
CLN3-243ENST00000635973 PLA2G1BP04054 148 aaKnown RBP11.75□□□□□ -0.53
CLN3-243ENST00000635973 MYCBP2O75592 4640 aa11.74□□□□□ -0.53
CLN3-243ENST00000635973 IGHV3OR16-9A0A0B4J2B5 98 aa11.74□□□□□ -0.53
CLN3-243ENST00000635973 NDUFA6P56556 154 aa11.74□□□□□ -0.53
CLN3-243ENST00000635973 CNBPP62633 177 aaKnown RBP11.74□□□□□ -0.53
CLN3-243ENST00000635973 GEMIN7Q9H840 131 aaKnown RBP11.74□□□□□ -0.53
CLN3-243ENST00000635973 ATP5LO75964 103 aa11.73□□□□□ -0.53
CLN3-243ENST00000635973 SEC11AP67812 179 aa11.73□□□□□ -0.53
CLN3-243ENST00000635973 PMVKQ15126 192 aa11.73□□□□□ -0.53
CLN3-243ENST00000635973 LINC00526Q96FQ7 95 aa11.73□□□□□ -0.53
CLN3-243ENST00000635973 VPS13BQ7Z7G8 4022 aa11.72□□□□□ -0.53
CLN3-243ENST00000635973 HERVK_113P63121 156 aa11.72□□□□□ -0.53
CLN3-243ENST00000635973 COX6A2Q02221 97 aa11.72□□□□□ -0.53
CLN3-243ENST00000635973 SPAG11BQ08648 103 aa11.72□□□□□ -0.53
CLN3-243ENST00000635973 PDZD11Q5EBL8 140 aa11.72□□□□□ -0.53
CLN3-243ENST00000635973 ORAOV1Q8WV07 137 aa11.72□□□□□ -0.53
CLN3-243ENST00000635973 CST9LQ9H4G1 147 aa11.72□□□□□ -0.53
CLN3-243ENST00000635973 Q6ZSA8 131 aa11.71□□□□□ -0.53
CLN3-243ENST00000635973 C9orf163Q8N9P6 203 aa11.71□□□□□ -0.53
CLN3-243ENST00000635973 IGHV3-64A0A075B6Q5 118 aa11.7□□□□□ -0.54
CLN3-243ENST00000635973 A0A087WZ39 114 aa11.7□□□□□ -0.54
CLN3-243ENST00000635973 SERF1AO75920 110 aa11.7□□□□□ -0.54
CLN3-243ENST00000635973 SLPIP03973 132 aa11.7□□□□□ -0.54
CLN3-243ENST00000635973 LINC00528Q8N1L1 170 aa11.7□□□□□ -0.54
CLN3-243ENST00000635973 OR10D4PQ8NGN7 298 aa11.7□□□□□ -0.54
CLN3-243ENST00000635973 SRRM2Q9UQ35 2752 aaKnown RBP11.7□□□□□ -0.54
CLN3-243ENST00000635973 IGLV4-69A0A075B6H9 119 aa11.69□□□□□ -0.54
CLN3-243ENST00000635973 A0A0J9YXV3 536 aa11.69□□□□□ -0.54
CLN3-243ENST00000635973 FAM19A3Q7Z5A8 133 aa11.69□□□□□ -0.54
CLN3-243ENST00000635973 FAM19A2Q8N3H0 131 aa11.69□□□□□ -0.54
CLN3-243ENST00000635973 LINC00469Q8N7U9 141 aa11.69□□□□□ -0.54
CLN3-243ENST00000635973 CARD19Q96LW7 228 aa11.69□□□□□ -0.54
CLN3-243ENST00000635973 J3QL48 77 aa11.68□□□□□ -0.54
CLN3-243ENST00000635973 PACRGQ96M98 296 aaPredicted RBP11.68□□□□□ -0.54
CLN3-243ENST00000635973 CAMK2N2Q96S95 79 aa11.68□□□□□ -0.54
CLN3-243ENST00000635973 TINCRA0A1B0GVN0 87 aa11.67□□□□□ -0.54
CLN3-243ENST00000635973 SYCNQ0VAF6 134 aa11.67□□□□□ -0.54
CLN3-243ENST00000635973 FLG2Q5D862 2391 aaPredicted RBP11.67□□□□□ -0.54
CLN3-243ENST00000635973 HIST1H2BKO60814 126 aa11.66□□□□□ -0.54
CLN3-243ENST00000635973 HIST1H2BJP06899 126 aa11.66□□□□□ -0.54
CLN3-243ENST00000635973 HIST1H2BOP23527 126 aa11.66□□□□□ -0.54
CLN3-243ENST00000635973 HIST1H2BBP33778 126 aa11.66□□□□□ -0.54
CLN3-243ENST00000635973 HIST1H2BDP58876 126 aa11.66□□□□□ -0.54
CLN3-243ENST00000635973 LINC00310P59036 64 aa11.66□□□□□ -0.54
CLN3-243ENST00000635973 HIST1H2BCP62807 126 aa11.66□□□□□ -0.54
CLN3-243ENST00000635973 HIST2H2BEQ16778 126 aa11.66□□□□□ -0.54
CLN3-243ENST00000635973 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.66□□□□□ -0.54
CLN3-243ENST00000635973 SCXQ7RTU7 201 aa11.66□□□□□ -0.54
CLN3-243ENST00000635973 LINC01561Q8N1V8 128 aa11.66□□□□□ -0.54
CLN3-243ENST00000635973 HIST1H2BHQ93079 126 aa11.66□□□□□ -0.54
CLN3-243ENST00000635973 IFI27L1Q96BM0 104 aa11.66□□□□□ -0.54
CLN3-243ENST00000635973 HIST1H2BNQ99877 126 aa11.66□□□□□ -0.54
CLN3-243ENST00000635973 HIST1H2BMQ99879 126 aa11.66□□□□□ -0.54
CLN3-243ENST00000635973 CDKN2A-AS1Q9UH64 79 aa11.66□□□□□ -0.54
CLN3-243ENST00000635973 C2orf48Q96LS8 159 aa11.65□□□□□ -0.54
CLN3-243ENST00000635973 CHAC1Q9BUX1 264 aa11.65□□□□□ -0.54
CLN3-243ENST00000635973 PRSS2P07478 247 aa11.64□□□□□ -0.55
CLN3-243ENST00000635973 TOMM7Q9P0U1 55 aa11.64□□□□□ -0.55
CLN3-243ENST00000635973 PKIGQ9Y2B9 76 aa11.64□□□□□ -0.55
CLN3-243ENST00000635973 NDUFA1O15239 70 aa11.63□□□□□ -0.55
CLN3-243ENST00000635973 LEPROTL1O95214 131 aa11.63□□□□□ -0.55
CLN3-243ENST00000635973 Q6ZRU5 148 aa11.63□□□□□ -0.55
CLN3-243ENST00000635973 DNAH8Q96JB1 4490 aa11.63□□□□□ -0.55
CLN3-243ENST00000635973 H3BRM9 83 aa11.62□□□□□ -0.55
CLN3-243ENST00000635973 NUPR1O60356 82 aa11.62□□□□□ -0.55
CLN3-243ENST00000635973 IGLC3P0DOY3 106 aa11.62□□□□□ -0.55
CLN3-243ENST00000635973 SDIM1Q6ZPB5 146 aa11.62□□□□□ -0.55
CLN3-243ENST00000635973 HSPB8Q9UJY1 196 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms