RNA–Protein interactions for RNA: ENST00000629088.1

PNKP-222, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-222ENST00000629088 ADIRFQ15847 76 aa9.83□□□□□ -0.84
PNKP-222ENST00000629088 FAM104BQ5XKR9 115 aa9.83□□□□□ -0.84
PNKP-222ENST00000629088 C20orf78Q9BR46 151 aa9.83□□□□□ -0.84
PNKP-222ENST00000629088 SRSF9Q13242 221 aaKnown RBP eCLIP9.82□□□□□ -0.84
PNKP-222ENST00000629088 TRBV24-1A0A075B6N3 115 aa9.81□□□□□ -0.84
PNKP-222ENST00000629088 SMIM27A0A1W2PRY6 76 aa9.81□□□□□ -0.84
PNKP-222ENST00000629088 APOMO95445 188 aa9.81□□□□□ -0.84
PNKP-222ENST00000629088 MRPL51Q4U2R6 128 aaKnown RBP9.81□□□□□ -0.84
PNKP-222ENST00000629088 CAMK2N2Q96S95 79 aa9.81□□□□□ -0.84
PNKP-222ENST00000629088 SMCO4Q9NRQ5 59 aa9.81□□□□□ -0.84
PNKP-222ENST00000629088 TRAV13-1A0A0B4J241 112 aa9.8□□□□□ -0.84
PNKP-222ENST00000629088 KRTAP10-8P60410 259 aa9.8□□□□□ -0.84
PNKP-222ENST00000629088 RNF151Q2KHN1 245 aa9.8□□□□□ -0.84
PNKP-222ENST00000629088 RPS10P5Q9NQ39 176 aa9.8□□□□□ -0.84
PNKP-222ENST00000629088 F8WDY8 70 aa9.79□□□□□ -0.84
PNKP-222ENST00000629088 GAGE2BQ13066 116 aa9.79□□□□□ -0.84
PNKP-222ENST00000629088 Q6ZUT4 128 aa9.79□□□□□ -0.84
PNKP-222ENST00000629088 OR10D4PQ8NGN7 298 aa9.79□□□□□ -0.84
PNKP-222ENST00000629088 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.78□□□□□ -0.84
PNKP-222ENST00000629088 CKS2P33552 79 aa9.78□□□□□ -0.84
PNKP-222ENST00000629088 RNASE13Q5GAN3 156 aaKnown RBP9.78□□□□□ -0.84
PNKP-222ENST00000629088 S100A8P05109 93 aa9.77□□□□□ -0.85
PNKP-222ENST00000629088 C5orf38Q86SI9 138 aa9.77□□□□□ -0.85
PNKP-222ENST00000629088 SPANXA1Q9NS26 97 aa9.77□□□□□ -0.85
PNKP-222ENST00000629088 A0A1W2PNN7 141 aa9.76□□□□□ -0.85
PNKP-222ENST00000629088 TNFRSF6BO95407 300 aa9.76□□□□□ -0.85
PNKP-222ENST00000629088 MRPS36P82909 103 aaKnown RBP9.76□□□□□ -0.85
PNKP-222ENST00000629088 SPAG11BQ08648 103 aa9.76□□□□□ -0.85
PNKP-222ENST00000629088 CBLN2Q8IUK8 224 aa9.76□□□□□ -0.85
PNKP-222ENST00000629088 SMIM2Q9BVW6 85 aa9.76□□□□□ -0.85
PNKP-222ENST00000629088 CTDSP1Q9GZU7 261 aa9.76□□□□□ -0.85
PNKP-222ENST00000629088 MRPL35Q9NZE8 188 aaKnown RBP9.76□□□□□ -0.85
PNKP-222ENST00000629088 PPBPP02775 128 aa9.75□□□□□ -0.85
PNKP-222ENST00000629088 MT-ND4LP03901 98 aa9.75□□□□□ -0.85
PNKP-222ENST00000629088 C9orf116Q5BN46 136 aaPredicted RBP9.75□□□□□ -0.85
PNKP-222ENST00000629088 IGHV3OR16-9A0A0B4J2B5 98 aa9.74□□□□□ -0.85
PNKP-222ENST00000629088 HBBP68871 147 aa9.74□□□□□ -0.85
PNKP-222ENST00000629088 RPL18AQ02543 176 aaKnown RBP9.74□□□□□ -0.85
PNKP-222ENST00000629088 ANAPC16Q96DE5 110 aa9.74□□□□□ -0.85
PNKP-222ENST00000629088 A0A1B0GXF2 115 aa9.73□□□□□ -0.85
PNKP-222ENST00000629088 RPL39P62891 51 aaKnown RBP9.73□□□□□ -0.85
PNKP-222ENST00000629088 FAM104AQ969W3 186 aa9.73□□□□□ -0.85
PNKP-222ENST00000629088 IMMP2LQ96T52 175 aa9.73□□□□□ -0.85
PNKP-222ENST00000629088 PSORS1C2Q9UIG4 136 aa9.73□□□□□ -0.85
PNKP-222ENST00000629088 D6R8Y8 96 aa9.72□□□□□ -0.85
PNKP-222ENST00000629088 ORAOV1Q8WV07 137 aa9.72□□□□□ -0.85
PNKP-222ENST00000629088 COLCA2A8K830 154 aa9.71□□□□□ -0.86
PNKP-222ENST00000629088 NDUFA1O15239 70 aa9.71□□□□□ -0.86
PNKP-222ENST00000629088 MT-ND6P03923 174 aa9.71□□□□□ -0.86
PNKP-222ENST00000629088 TLX1NBP0CAT3 122 aa9.71□□□□□ -0.86
PNKP-222ENST00000629088 LPAP08519 4548 aa9.71□□□□□ -0.86
PNKP-222ENST00000629088 IFITM10A6NMD0 228 aa9.7□□□□□ -0.86
PNKP-222ENST00000629088 NPYP01303 97 aa9.7□□□□□ -0.86
PNKP-222ENST00000629088 MRPL54Q6P161 138 aaKnown RBP9.7□□□□□ -0.86
PNKP-222ENST00000629088 ATP5L2Q7Z4Y8 100 aa9.7□□□□□ -0.86
PNKP-222ENST00000629088 OPRPNQ99935 248 aaPredicted RBP9.7□□□□□ -0.86
PNKP-222ENST00000629088 PYGO1Q9Y3Y4 419 aa9.7□□□□□ -0.86
PNKP-222ENST00000629088 ORMDL3Q8N138 153 aa9.69□□□□□ -0.86
PNKP-222ENST00000629088 YPEL4Q96NS1 127 aa9.69□□□□□ -0.86
PNKP-222ENST00000629088 TGIF2-C20orf24A0A0A6YYL0 155 aa9.68□□□□□ -0.86
PNKP-222ENST00000629088 IFI27P40305 119 aaPredicted RBP9.68□□□□□ -0.86
PNKP-222ENST00000629088 C1orf137Q5JT78 98 aa9.68□□□□□ -0.86
PNKP-222ENST00000629088 PHF5AQ7RTV0 110 aaKnown RBP9.68□□□□□ -0.86
PNKP-222ENST00000629088 A0A087WZ39 114 aa9.67□□□□□ -0.86
PNKP-222ENST00000629088 RAB5AP20339 215 aa9.67□□□□□ -0.86
PNKP-222ENST00000629088 S100PP25815 95 aa9.67□□□□□ -0.86
PNKP-222ENST00000629088 LINC00518Q8N0U6 118 aa9.67□□□□□ -0.86
PNKP-222ENST00000629088 LAMTOR2Q9Y2Q5 125 aa9.67□□□□□ -0.86
PNKP-222ENST00000629088 PRSS47A8MTI9 375 aa9.66□□□□□ -0.86
PNKP-222ENST00000629088 TMEM136Q6ZRR5 245 aa9.66□□□□□ -0.86
PNKP-222ENST00000629088 DIRC1Q969H9 104 aa9.66□□□□□ -0.86
PNKP-222ENST00000629088 TRBV30A0A0K0K1B3 111 aa9.65□□□□□ -0.86
PNKP-222ENST00000629088 IGLV7-43P04211 117 aa9.65□□□□□ -0.86
PNKP-222ENST00000629088 C10orf25Q5T742 122 aa9.65□□□□□ -0.86
PNKP-222ENST00000629088 UNQ6190/PRO20217Q6UXQ8 127 aa9.65□□□□□ -0.86
PNKP-222ENST00000629088 LINC01561Q8N1V8 128 aa9.65□□□□□ -0.86
PNKP-222ENST00000629088 PRELID3AQ96N28 172 aa9.65□□□□□ -0.86
PNKP-222ENST00000629088 C6orf48Q9UBA6 75 aa9.65□□□□□ -0.86
PNKP-222ENST00000629088 IGLV4-3A0A075B6K6 122 aa9.64□□□□□ -0.87
PNKP-222ENST00000629088 KIAA0087Q14695 138 aa9.64□□□□□ -0.87
PNKP-222ENST00000629088 LINC00242Q5T6M2 205 aa9.64□□□□□ -0.87
PNKP-222ENST00000629088 TMEM141Q96I45 108 aa9.64□□□□□ -0.87
PNKP-222ENST00000629088 TRAV9-1A0A075B6T8 112 aa9.62□□□□□ -0.87
PNKP-222ENST00000629088 NPSP0C0P6 89 aa9.62□□□□□ -0.87
PNKP-222ENST00000629088 TEX43Q6ZNM6 134 aa9.62□□□□□ -0.87
PNKP-222ENST00000629088 FAM168BA1KXE4 195 aa9.61□□□□□ -0.87
PNKP-222ENST00000629088 NDUFC2-KCTD14E9PQ53 114 aa9.61□□□□□ -0.87
PNKP-222ENST00000629088 H0Y9J4 135 aa9.61□□□□□ -0.87
PNKP-222ENST00000629088 K7EMI3 77 aa9.61□□□□□ -0.87
PNKP-222ENST00000629088 RAB5BP61020 215 aa9.61□□□□□ -0.87
PNKP-222ENST00000629088 C2orf88Q9BSF0 95 aa9.61□□□□□ -0.87
PNKP-222ENST00000629088 MAP1LC3AQ9H492 121 aa9.61□□□□□ -0.87
PNKP-222ENST00000629088 CYSLTR1Q9Y271 337 aa9.61□□□□□ -0.87
PNKP-222ENST00000629088 UBE2D1P51668 147 aa9.6□□□□□ -0.87
PNKP-222ENST00000629088 GAGE2EQ4V326 116 aa9.6□□□□□ -0.87
PNKP-222ENST00000629088 Q6ZN92 141 aa9.6□□□□□ -0.87
PNKP-222ENST00000629088 FAM19A5Q7Z5A7 132 aaPredicted RBP9.6□□□□□ -0.87
PNKP-222ENST00000629088 PACRGQ96M98 296 aaPredicted RBP9.6□□□□□ -0.87
PNKP-222ENST00000629088 GAGE2DQ9UEU5 116 aa9.6□□□□□ -0.87
PNKP-222ENST00000629088 KRTAP11-1Q8IUC1 163 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms