RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 MAST4O15021 2626 aa3.67□□□□□ -1.82
VPS13D-213ENST00000613099 HCG22E2RYF7 251 aa3.67□□□□□ -1.82
VPS13D-213ENST00000613099 IGHV3-16A0A0C4DH30 117 aa3.67□□□□□ -1.82
VPS13D-213ENST00000613099 IGHV3-38A0A0C4DH36 116 aa3.67□□□□□ -1.82
VPS13D-213ENST00000613099 KLK9Q9UKQ9 250 aa3.67□□□□□ -1.82
VPS13D-213ENST00000613099 LYNX1P0DP58 116 aa3.67□□□□□ -1.82
VPS13D-213ENST00000613099 KLKP1Q107X0 134 aa3.67□□□□□ -1.82
VPS13D-213ENST00000613099 FHL2Q14192 279 aa3.67□□□□□ -1.82
VPS13D-213ENST00000613099 Q6ZPA2 131 aa3.67□□□□□ -1.82
VPS13D-213ENST00000613099 STAB1Q9NY15 2570 aa3.67□□□□□ -1.82
VPS13D-213ENST00000613099 RPL37AP61513 92 aaKnown RBP3.67□□□□□ -1.82
VPS13D-213ENST00000613099 C9orf106Q8NAJ2 232 aa3.67□□□□□ -1.82
VPS13D-213ENST00000613099 SPINK13Q1W4C9 94 aa3.66□□□□□ -1.82
VPS13D-213ENST00000613099 B9D2Q9BPU9 175 aa3.66□□□□□ -1.82
VPS13D-213ENST00000613099 TSHBP01222 138 aa3.66□□□□□ -1.82
VPS13D-213ENST00000613099 CCL18P55774 89 aa3.66□□□□□ -1.82
VPS13D-213ENST00000613099 IGHV3-53P01767 116 aa3.66□□□□□ -1.82
VPS13D-213ENST00000613099 LY6EQ16553 131 aa3.66□□□□□ -1.82
VPS13D-213ENST00000613099 C1orf158Q8N1D5 194 aa3.66□□□□□ -1.82
VPS13D-213ENST00000613099 H3BS24 57 aa3.66□□□□□ -1.82
VPS13D-213ENST00000613099 IGLV2-18A0A075B6J9 118 aa3.66□□□□□ -1.82
VPS13D-213ENST00000613099 HILS1P60008 231 aa3.66□□□□□ -1.82
VPS13D-213ENST00000613099 ZNF73O43830 326 aaPredicted RBP3.66□□□□□ -1.82
VPS13D-213ENST00000613099 LINC00208Q96KT6 92 aa3.66□□□□□ -1.82
VPS13D-213ENST00000613099 TRBV6-8A0A0A6YYG3 113 aa3.66□□□□□ -1.82
VPS13D-213ENST00000613099 FAM27E3Q08E93 113 aa3.66□□□□□ -1.82
VPS13D-213ENST00000613099 Q96MF0 132 aa3.66□□□□□ -1.82
VPS13D-213ENST00000613099 CENPEQ02224 2701 aa3.66□□□□□ -1.82
VPS13D-213ENST00000613099 ATP1A1-AS1Q5TC04 95 aa3.66□□□□□ -1.82
VPS13D-213ENST00000613099 LOC110117498A0A087WWA1 95 aa3.65□□□□□ -1.82
VPS13D-213ENST00000613099 LINC01600Q96MT4 127 aa3.65□□□□□ -1.82
VPS13D-213ENST00000613099 CCL19Q99731 98 aa3.65□□□□□ -1.82
VPS13D-213ENST00000613099 FSHBP01225 129 aa3.65□□□□□ -1.83
VPS13D-213ENST00000613099 TSPEAR-AS2P59090 65 aa3.65□□□□□ -1.83
VPS13D-213ENST00000613099 PRR4Q16378 134 aa3.65□□□□□ -1.83
VPS13D-213ENST00000613099 PINLYPA6NC86 204 aa3.65□□□□□ -1.83
VPS13D-213ENST00000613099 TNFRSF13BO14836 293 aaPredicted RBP3.65□□□□□ -1.83
VPS13D-213ENST00000613099 GPHB5Q86YW7 130 aa3.65□□□□□ -1.83
VPS13D-213ENST00000613099 H7BZZ5 65 aa3.65□□□□□ -1.83
VPS13D-213ENST00000613099 K7EQD1 137 aa3.65□□□□□ -1.83
VPS13D-213ENST00000613099 C22orf34Q6ZV56 151 aa3.65□□□□□ -1.83
VPS13D-213ENST00000613099 FAM30AQ9NZY2 134 aa3.65□□□□□ -1.83
VPS13D-213ENST00000613099 IGKV4-1P06312 121 aa3.64□□□□□ -1.83
VPS13D-213ENST00000613099 LINC00467Q9BRT7 94 aa3.64□□□□□ -1.83
VPS13D-213ENST00000613099 ARRDC1-AS1Q9H2J1 176 aa3.64□□□□□ -1.83
VPS13D-213ENST00000613099 CGB3P0DN86 165 aa3.64□□□□□ -1.83
VPS13D-213ENST00000613099 CGB7P0DN87 165 aa3.64□□□□□ -1.83
VPS13D-213ENST00000613099 Q1T7F1 81 aa3.64□□□□□ -1.83
VPS13D-213ENST00000613099 HELZ2Q9BYK8 2649 aaKnown RBP3.64□□□□□ -1.83
VPS13D-213ENST00000613099 TRBV6-4A0A1B0GX49 114 aa3.64□□□□□ -1.83
VPS13D-213ENST00000613099 SETXQ7Z333 2677 aaKnown RBP3.64□□□□□ -1.83
VPS13D-213ENST00000613099 A0A087WYN8 130 aa3.64□□□□□ -1.83
VPS13D-213ENST00000613099 DHRS4-AS1Q9P1J3 65 aa3.64□□□□□ -1.83
VPS13D-213ENST00000613099 SPAG11AQ6PDA7 123 aa3.64□□□□□ -1.83
VPS13D-213ENST00000613099 ZFAND2AQ8N6M9 145 aa3.64□□□□□ -1.83
VPS13D-213ENST00000613099 OVOL3O00110 214 aa3.64□□□□□ -1.83
VPS13D-213ENST00000613099 ELOF1P60002 83 aaKnown RBP3.64□□□□□ -1.83
VPS13D-213ENST00000613099 PSMG3-AS1Q96PY0 264 aa3.64□□□□□ -1.83
VPS13D-213ENST00000613099 GAS8-AS1O95177 125 aa3.64□□□□□ -1.83
VPS13D-213ENST00000613099 LYNX1G3V0Z9 82 aa3.64□□□□□ -1.83
VPS13D-213ENST00000613099 Q8N9L7 120 aa3.63□□□□□ -1.83
VPS13D-213ENST00000613099 Q5XG85 94 aa3.63□□□□□ -1.83
VPS13D-213ENST00000613099 Q9UF83 564 aa3.63□□□□□ -1.83
VPS13D-213ENST00000613099 ATRQ13535 2644 aa3.63□□□□□ -1.83
VPS13D-213ENST00000613099 AMELXQ99217 191 aa3.63□□□□□ -1.83
VPS13D-213ENST00000613099 USP24Q9UPU5 2620 aa3.63□□□□□ -1.83
VPS13D-213ENST00000613099 RETNLBQ9BQ08 111 aa3.63□□□□□ -1.83
VPS13D-213ENST00000613099 HECTD1Q9ULT8 2610 aa3.63□□□□□ -1.83
VPS13D-213ENST00000613099 UNC79Q9P2D8 2635 aa3.63□□□□□ -1.83
VPS13D-213ENST00000613099 ANGP03950 147 aaKnown RBP3.63□□□□□ -1.83
VPS13D-213ENST00000613099 FLG2Q5D862 2391 aaPredicted RBP3.62□□□□□ -1.83
VPS13D-213ENST00000613099 ATP6V0E1O15342 81 aa3.62□□□□□ -1.83
VPS13D-213ENST00000613099 RBM12B-AS1Q9P1G2 102 aa3.62□□□□□ -1.83
VPS13D-213ENST00000613099 DEFB131AP59861 70 aa3.62□□□□□ -1.83
VPS13D-213ENST00000613099 H3BPC8 53 aa3.62□□□□□ -1.83
VPS13D-213ENST00000613099 CDSNQ15517 529 aa3.62□□□□□ -1.83
VPS13D-213ENST00000613099 PRSS33Q8NF86 280 aa3.62□□□□□ -1.83
VPS13D-213ENST00000613099 SMCR5Q8TEV8 140 aa3.62□□□□□ -1.83
VPS13D-213ENST00000613099 LINC01560Q8TB33 94 aa3.62□□□□□ -1.83
VPS13D-213ENST00000613099 Q6ZRU5 148 aa3.62□□□□□ -1.83
VPS13D-213ENST00000613099 E7EUB6 86 aa3.62□□□□□ -1.83
VPS13D-213ENST00000613099 C2orf48Q96LS8 159 aa3.62□□□□□ -1.83
VPS13D-213ENST00000613099 C10orf25Q5T742 122 aa3.62□□□□□ -1.83
VPS13D-213ENST00000613099 C10orf142B7Z368 130 aa3.62□□□□□ -1.83
VPS13D-213ENST00000613099 H3BNG1 76 aa3.62□□□□□ -1.83
VPS13D-213ENST00000613099 EPOPA6NHQ4 379 aa3.61□□□□□ -1.83
VPS13D-213ENST00000613099 IGF1P05019 195 aa3.61□□□□□ -1.83
VPS13D-213ENST00000613099 C9orf116Q5BN46 136 aaPredicted RBP3.61□□□□□ -1.83
VPS13D-213ENST00000613099 LYPD2Q6UXB3 125 aa3.61□□□□□ -1.83
VPS13D-213ENST00000613099 G3V318 75 aa3.61□□□□□ -1.83
VPS13D-213ENST00000613099 DEFB130BP0DP73 79 aa3.61□□□□□ -1.83
VPS13D-213ENST00000613099 DEFB130AP0DP74 79 aa3.61□□□□□ -1.83
VPS13D-213ENST00000613099 ZNF292O60281 2723 aa3.61□□□□□ -1.83
VPS13D-213ENST00000613099 KLK9Q2XQG4 91 aa3.61□□□□□ -1.83
VPS13D-213ENST00000613099 TRAV22A0A0B4J277 110 aa3.61□□□□□ -1.83
VPS13D-213ENST00000613099 C16orf74Q96GX8 76 aa3.61□□□□□ -1.83
VPS13D-213ENST00000613099 WFDC10BQ8IUB3 73 aa3.61□□□□□ -1.83
VPS13D-213ENST00000613099 ZNF706Q9Y5V0 76 aaPredicted RBP3.61□□□□□ -1.83
VPS13D-213ENST00000613099 PATE3B3GLJ2 98 aa3.61□□□□□ -1.83
VPS13D-213ENST00000613099 SRCAPQ6ZRS2 3230 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 102.9 ms