RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 ODF1Q14990 250 aa9.54□□□□□ -0.88
UPF1-211ENST00000600868 IGLV4-69A0A075B6H9 119 aa9.53□□□□□ -0.88
UPF1-211ENST00000600868 F8VRH5 84 aa9.53□□□□□ -0.88
UPF1-211ENST00000600868 H0Y8G0 127 aa9.53□□□□□ -0.88
UPF1-211ENST00000600868 COX6A2Q02221 97 aa9.53□□□□□ -0.88
UPF1-211ENST00000600868 PET117Q6UWS5 81 aa9.53□□□□□ -0.88
UPF1-211ENST00000600868 MAPKAPK5-AS1Q8N8E1 139 aa9.53□□□□□ -0.88
UPF1-211ENST00000600868 GEMIN7Q9H840 131 aaKnown RBP9.53□□□□□ -0.88
UPF1-211ENST00000600868 PSCAO43653 123 aa9.52□□□□□ -0.89
UPF1-211ENST00000600868 KRTDAPP60985 99 aa9.52□□□□□ -0.89
UPF1-211ENST00000600868 MRPL35Q9NZE8 188 aaKnown RBP9.52□□□□□ -0.89
UPF1-211ENST00000600868 IGLV5-45A0A087WSX0 123 aa9.51□□□□□ -0.89
UPF1-211ENST00000600868 COX7A2LO14548 114 aa9.51□□□□□ -0.89
UPF1-211ENST00000600868 RTL8CO15255 209 aa9.51□□□□□ -0.89
UPF1-211ENST00000600868 LINC01545Q5VT33 79 aa9.51□□□□□ -0.89
UPF1-211ENST00000600868 CHAC1Q9BUX1 264 aa9.51□□□□□ -0.89
UPF1-211ENST00000600868 A0A087WZ39 114 aa9.5□□□□□ -0.89
UPF1-211ENST00000600868 C5orf38Q86SI9 138 aa9.5□□□□□ -0.89
UPF1-211ENST00000600868 LINC01561Q8N1V8 128 aa9.5□□□□□ -0.89
UPF1-211ENST00000600868 C11orf86A6NJI1 115 aa9.49□□□□□ -0.89
UPF1-211ENST00000600868 PLNP26678 52 aa9.49□□□□□ -0.89
UPF1-211ENST00000600868 LINC00469Q8N7U9 141 aa9.49□□□□□ -0.89
UPF1-211ENST00000600868 CDKN2A-AS1Q9UH64 79 aa9.49□□□□□ -0.89
UPF1-211ENST00000600868 KMT2CQ8NEZ4 4911 aaKnown RBP9.48□□□□□ -0.89
UPF1-211ENST00000600868 DPM2O94777 84 aa9.48□□□□□ -0.89
UPF1-211ENST00000600868 ZNF22P17026 224 aaPredicted RBP9.48□□□□□ -0.89
UPF1-211ENST00000600868 OR10D4PQ8NGN7 298 aa9.48□□□□□ -0.89
UPF1-211ENST00000600868 C20orf202A1L168 122 aa9.47□□□□□ -0.89
UPF1-211ENST00000600868 LRCOL1A6NCL2 159 aa9.47□□□□□ -0.89
UPF1-211ENST00000600868 H3BRM9 83 aa9.47□□□□□ -0.89
UPF1-211ENST00000600868 MALP21145 153 aa9.47□□□□□ -0.89
UPF1-211ENST00000600868 CFAP161Q6P656 301 aa9.47□□□□□ -0.89
UPF1-211ENST00000600868 PMCHL2Q9BQD1 86 aa9.47□□□□□ -0.89
UPF1-211ENST00000600868 HYDINQ4G0P3 5121 aa9.47□□□□□ -0.89
UPF1-211ENST00000600868 DNAH2Q9P225 4427 aa9.46□□□□□ -0.89
UPF1-211ENST00000600868 IGHV1-58A0A0C4DH39 117 aa9.46□□□□□ -0.9
UPF1-211ENST00000600868 USP17L23D6RBM5 183 aa9.46□□□□□ -0.9
UPF1-211ENST00000600868 APOMO95445 188 aa9.46□□□□□ -0.9
UPF1-211ENST00000600868 IGKCP01834 107 aa9.46□□□□□ -0.9
UPF1-211ENST00000600868 AKR1D1P51857 326 aa9.46□□□□□ -0.9
UPF1-211ENST00000600868 TMEM170BQ5T4T1 132 aa9.46□□□□□ -0.9
UPF1-211ENST00000600868 IGHV3-64A0A075B6Q5 118 aa9.45□□□□□ -0.9
UPF1-211ENST00000600868 A0A087WTM6 91 aa9.45□□□□□ -0.9
UPF1-211ENST00000600868 TNP2Q05952 138 aa9.45□□□□□ -0.9
UPF1-211ENST00000600868 C14orf177Q52M58 125 aa9.45□□□□□ -0.9
UPF1-211ENST00000600868 LINC00336Q6ZUF6 198 aa9.45□□□□□ -0.9
UPF1-211ENST00000600868 C15orf56Q8N910 161 aa9.45□□□□□ -0.9
UPF1-211ENST00000600868 WFDC2Q14508 124 aa9.44□□□□□ -0.9
UPF1-211ENST00000600868 DNAH10Q8IVF4 4471 aa9.44□□□□□ -0.9
UPF1-211ENST00000600868 FRAS1Q86XX4 4008 aa9.43□□□□□ -0.9
UPF1-211ENST00000600868 GVQW2A0A096LPI5 108 aaPredicted RBP9.43□□□□□ -0.9
UPF1-211ENST00000600868 TMEM223A0PJW6 202 aa9.43□□□□□ -0.9
UPF1-211ENST00000600868 SMIM1B2RUZ4 78 aa9.43□□□□□ -0.9
UPF1-211ENST00000600868 LECT2O14960 151 aa9.43□□□□□ -0.9
UPF1-211ENST00000600868 SPINK8P0C7L1 97 aa9.43□□□□□ -0.9
UPF1-211ENST00000600868 IGLV5-39A0A0G2JS06 123 aa9.42□□□□□ -0.9
UPF1-211ENST00000600868 EREGO14944 169 aa9.42□□□□□ -0.9
UPF1-211ENST00000600868 ORAOV1Q8WV07 137 aa9.42□□□□□ -0.9
UPF1-211ENST00000600868 Q8N814 137 aa9.41□□□□□ -0.9
UPF1-211ENST00000600868 RYR2Q92736 4967 aa9.4□□□□□ -0.9
UPF1-211ENST00000600868 hDV102S1A0JD36 115 aa9.4□□□□□ -0.9
UPF1-211ENST00000600868 ZNF561-AS1K7EIQ3 104 aa9.4□□□□□ -0.9
UPF1-211ENST00000600868 SCGB1D1O95968 90 aa9.4□□□□□ -0.9
UPF1-211ENST00000600868 SPAG11BQ08648 103 aa9.4□□□□□ -0.9
UPF1-211ENST00000600868 KIAA0087Q14695 138 aa9.4□□□□□ -0.9
UPF1-211ENST00000600868 JOSD1Q15040 202 aaPredicted RBP9.4□□□□□ -0.9
UPF1-211ENST00000600868 HIGD2BQ4VC39 106 aa9.4□□□□□ -0.9
UPF1-211ENST00000600868 DNAH17Q9UFH2 4485 aa9.4□□□□□ -0.91
UPF1-211ENST00000600868 HERVK_113P61574 105 aa9.39□□□□□ -0.91
UPF1-211ENST00000600868 Q8IZM0 81 aa9.39□□□□□ -0.91
UPF1-211ENST00000600868 F8WDY8 70 aa9.38□□□□□ -0.91
UPF1-211ENST00000600868 PRSS2P07478 247 aa9.38□□□□□ -0.91
UPF1-211ENST00000600868 ATOH7Q8N100 152 aa9.38□□□□□ -0.91
UPF1-211ENST00000600868 COX7B2Q8TF08 81 aa9.38□□□□□ -0.91
UPF1-211ENST00000600868 NTN5Q8WTR8 489 aaPredicted RBP9.38□□□□□ -0.91
UPF1-211ENST00000600868 C2orf48Q96LS8 159 aa9.38□□□□□ -0.91
UPF1-211ENST00000600868 C6orf226Q5I0X4 101 aa9.37□□□□□ -0.91
UPF1-211ENST00000600868 LINC00526Q96FQ7 95 aa9.37□□□□□ -0.91
UPF1-211ENST00000600868 TOMM7Q9P0U1 55 aa9.37□□□□□ -0.91
UPF1-211ENST00000600868 E9PLD3 99 aa9.36□□□□□ -0.91
UPF1-211ENST00000600868 LEPROTO15243 131 aa9.36□□□□□ -0.91
UPF1-211ENST00000600868 SLPIP03973 132 aa9.36□□□□□ -0.91
UPF1-211ENST00000600868 CNBPP62633 177 aaKnown RBP9.36□□□□□ -0.91
UPF1-211ENST00000600868 STPG4Q8N801 248 aa9.36□□□□□ -0.91
UPF1-211ENST00000600868 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.35□□□□□ -0.91
UPF1-211ENST00000600868 CXCL5P42830 114 aa9.35□□□□□ -0.91
UPF1-211ENST00000600868 PLEKHB2Q96CS7 222 aa9.35□□□□□ -0.91
UPF1-211ENST00000600868 LOC105371267A0A1B0GV96 52 aa9.34□□□□□ -0.91
UPF1-211ENST00000600868 NDUFA1O15239 70 aa9.34□□□□□ -0.91
UPF1-211ENST00000600868 CKS1BP61024 79 aa9.34□□□□□ -0.91
UPF1-211ENST00000600868 SYCNQ0VAF6 134 aa9.34□□□□□ -0.91
UPF1-211ENST00000600868 PYY3Q5JQD4 70 aa9.34□□□□□ -0.91
UPF1-211ENST00000600868 CAMK2N2Q96S95 79 aa9.34□□□□□ -0.91
UPF1-211ENST00000600868 FAT2Q9NYQ8 4349 aa9.34□□□□□ -0.91
UPF1-211ENST00000600868 A0A1B0GVY2 172 aa9.33□□□□□ -0.92
UPF1-211ENST00000600868 HSBP1L1C9JCN9 74 aa9.33□□□□□ -0.92
UPF1-211ENST00000600868 J3QQQ9 107 aa9.33□□□□□ -0.92
UPF1-211ENST00000600868 SFTA2Q6UW10 78 aa9.33□□□□□ -0.92
UPF1-211ENST00000600868 C2orf82Q6UX34 121 aa9.33□□□□□ -0.92
UPF1-211ENST00000600868 PGPEP1Q9NXJ5 209 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms