RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	LRP2	P98164	4655 aa		10.82	□□□□□ -0.68
SHKBP1-223	ENST00000600552	IFITM10	A6NMD0	228 aa		10.81	□□□□□ -0.68
SHKBP1-223	ENST00000600552	SMIM2	Q9BVW6	85 aa		10.81	□□□□□ -0.68
SHKBP1-223	ENST00000600552	RNF213	Q63HN8	5207 aa		10.8	□□□□□ -0.68
SHKBP1-223	ENST00000600552		A0A1B0GW15	77 aa		10.8	□□□□□ -0.68
SHKBP1-223	ENST00000600552	NPY	P01303	97 aa		10.8	□□□□□ -0.68
SHKBP1-223	ENST00000600552	PEA15	Q15121	130 aa		10.8	□□□□□ -0.68
SHKBP1-223	ENST00000600552	OR10D4P	Q8NGN7	298 aa		10.8	□□□□□ -0.68
SHKBP1-223	ENST00000600552	TRBV24-1	A0A075B6N3	115 aa		10.79	□□□□□ -0.68
SHKBP1-223	ENST00000600552	FAM168B	A1KXE4	195 aa		10.79	□□□□□ -0.68
SHKBP1-223	ENST00000600552		F8W036	122 aa		10.79	□□□□□ -0.68
SHKBP1-223	ENST00000600552	HBB	P68871	147 aa		10.79	□□□□□ -0.68
SHKBP1-223	ENST00000600552	C10orf25	Q5T742	122 aa		10.79	□□□□□ -0.68
SHKBP1-223	ENST00000600552		A0A087WZ39	114 aa		10.78	□□□□□ -0.68
SHKBP1-223	ENST00000600552	NDUFA1	O15239	70 aa		10.78	□□□□□ -0.68
SHKBP1-223	ENST00000600552	S100A8	P05109	93 aa		10.78	□□□□□ -0.68
SHKBP1-223	ENST00000600552	RNF151	Q2KHN1	245 aa		10.78	□□□□□ -0.68
SHKBP1-223	ENST00000600552	GAGE2E	Q4V326	116 aa		10.78	□□□□□ -0.68
SHKBP1-223	ENST00000600552	UNQ6190/PRO20217	Q6UXQ8	127 aa		10.78	□□□□□ -0.68
SHKBP1-223	ENST00000600552	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	10.78	□□□□□ -0.68
SHKBP1-223	ENST00000600552	SPANXA1	Q9NS26	97 aa		10.78	□□□□□ -0.68
SHKBP1-223	ENST00000600552	GAGE2D	Q9UEU5	116 aa		10.78	□□□□□ -0.68
SHKBP1-223	ENST00000600552	RPL32	P62910	135 aa	Known RBP	10.77	□□□□□ -0.69
SHKBP1-223	ENST00000600552	FAM104A	Q969W3	186 aa		10.77	□□□□□ -0.69
SHKBP1-223	ENST00000600552	IMMP2L	Q96T52	175 aa		10.77	□□□□□ -0.69
SHKBP1-223	ENST00000600552	IGHV3OR16-9	A0A0B4J2B5	98 aa		10.76	□□□□□ -0.69
SHKBP1-223	ENST00000600552		A0A1B0GVG6	124 aa		10.76	□□□□□ -0.69
SHKBP1-223	ENST00000600552	RAB5A	P20339	215 aa		10.76	□□□□□ -0.69
SHKBP1-223	ENST00000600552	MRPL35	Q9NZE8	188 aa	Known RBP	10.76	□□□□□ -0.69
SHKBP1-223	ENST00000600552	TGIF2-C20orf24	A0A0A6YYL0	155 aa		10.75	□□□□□ -0.69
SHKBP1-223	ENST00000600552	LOC389332	A0A1B0GUA5	103 aa		10.75	□□□□□ -0.69
SHKBP1-223	ENST00000600552	IFI27	P40305	119 aa	Predicted RBP	10.74	□□□□□ -0.69
SHKBP1-223	ENST00000600552	MRPS36	P82909	103 aa	Known RBP	10.74	□□□□□ -0.69
SHKBP1-223	ENST00000600552	TMEM136	Q6ZRR5	245 aa		10.74	□□□□□ -0.69
SHKBP1-223	ENST00000600552	PRELID3A	Q96N28	172 aa		10.74	□□□□□ -0.69
SHKBP1-223	ENST00000600552	C6orf48	Q9UBA6	75 aa		10.74	□□□□□ -0.69
SHKBP1-223	ENST00000600552	IGLV7-43	P04211	117 aa		10.73	□□□□□ -0.69
SHKBP1-223	ENST00000600552	ORMDL3	Q8N138	153 aa		10.73	□□□□□ -0.69
SHKBP1-223	ENST00000600552	PRR26	Q8N8Z3	221 aa		10.73	□□□□□ -0.69
SHKBP1-223	ENST00000600552		A0A1B0GXF2	115 aa		10.72	□□□□□ -0.69
SHKBP1-223	ENST00000600552		F8WDY8	70 aa		10.72	□□□□□ -0.69
SHKBP1-223	ENST00000600552	PPBP	P02775	128 aa		10.72	□□□□□ -0.69
SHKBP1-223	ENST00000600552	KRTAP11-1	Q8IUC1	163 aa		10.72	□□□□□ -0.69
SHKBP1-223	ENST00000600552	DIRC1	Q969H9	104 aa		10.72	□□□□□ -0.69
SHKBP1-223	ENST00000600552	UBE2B	P63146	152 aa		10.71	□□□□□ -0.69
SHKBP1-223	ENST00000600552	ZC2HC1B	Q5TFG8	222 aa		10.71	□□□□□ -0.69
SHKBP1-223	ENST00000600552	C2orf82	Q6UX34	121 aa		10.71	□□□□□ -0.69
SHKBP1-223	ENST00000600552	IGLV4-3	A0A075B6K6	122 aa		10.7	□□□□□ -0.7
SHKBP1-223	ENST00000600552	LINC00242	Q5T6M2	205 aa		10.69	□□□□□ -0.7
SHKBP1-223	ENST00000600552	TMEM141	Q96I45	108 aa		10.69	□□□□□ -0.7
SHKBP1-223	ENST00000600552	SMDT1	Q9H4I9	107 aa		10.69	□□□□□ -0.7
SHKBP1-223	ENST00000600552	PACRG	Q96M98	296 aa	Predicted RBP	10.68	□□□□□ -0.7
SHKBP1-223	ENST00000600552	TOMM7	Q9P0U1	55 aa		10.68	□□□□□ -0.7
SHKBP1-223	ENST00000600552		M0QXV9	152 aa		10.67	□□□□□ -0.7
SHKBP1-223	ENST00000600552	TLX1NB	P0CAT3	122 aa		10.67	□□□□□ -0.7
SHKBP1-223	ENST00000600552	KIAA0087	Q14695	138 aa		10.67	□□□□□ -0.7
SHKBP1-223	ENST00000600552	TEX43	Q6ZNM6	134 aa		10.67	□□□□□ -0.7
SHKBP1-223	ENST00000600552	MAP1LC3A	Q9H492	121 aa		10.67	□□□□□ -0.7
SHKBP1-223	ENST00000600552		H0Y9J4	135 aa		10.66	□□□□□ -0.7
SHKBP1-223	ENST00000600552	ATP5L2	Q7Z4Y8	100 aa		10.66	□□□□□ -0.7
SHKBP1-223	ENST00000600552	C2orf88	Q9BSF0	95 aa		10.66	□□□□□ -0.7
SHKBP1-223	ENST00000600552	PYGO1	Q9Y3Y4	419 aa		10.66	□□□□□ -0.7
SHKBP1-223	ENST00000600552	PRSS2	P07478	247 aa		10.65	□□□□□ -0.7
SHKBP1-223	ENST00000600552	KRTAP7-1	Q8IUC3	87 aa		10.65	□□□□□ -0.7
SHKBP1-223	ENST00000600552		Q6ZN92	141 aa		10.64	□□□□□ -0.71
SHKBP1-223	ENST00000600552	LINC00469	Q8N7U9	141 aa		10.64	□□□□□ -0.71
SHKBP1-223	ENST00000600552	VCX2	Q9H322	139 aa		10.64	□□□□□ -0.71
SHKBP1-223	ENST00000600552	CYSLTR1	Q9Y271	337 aa		10.64	□□□□□ -0.71
SHKBP1-223	ENST00000600552	TRBV30	A0A0K0K1B3	111 aa		10.63	□□□□□ -0.71
SHKBP1-223	ENST00000600552	NDUFC2-KCTD14	E9PQ53	114 aa		10.63	□□□□□ -0.71
SHKBP1-223	ENST00000600552	UBE2D1	P51668	147 aa		10.63	□□□□□ -0.71
SHKBP1-223	ENST00000600552	C9orf129	Q5T035	196 aa	Known RBP	10.63	□□□□□ -0.71
SHKBP1-223	ENST00000600552	C2orf66	Q6UXQ4	117 aa		10.63	□□□□□ -0.71
SHKBP1-223	ENST00000600552	CKS1B	P61024	79 aa		10.62	□□□□□ -0.71
SHKBP1-223	ENST00000600552		Q8N8P6	123 aa		10.62	□□□□□ -0.71
SHKBP1-223	ENST00000600552	C6orf226	Q5I0X4	101 aa		10.61	□□□□□ -0.71
SHKBP1-223	ENST00000600552	LAMTOR2	Q9Y2Q5	125 aa		10.6	□□□□□ -0.71
SHKBP1-223	ENST00000600552	MT-ND4L	P03901	98 aa		10.59	□□□□□ -0.71
SHKBP1-223	ENST00000600552	LINC00173	Q6ZV60	143 aa		10.59	□□□□□ -0.71
SHKBP1-223	ENST00000600552	ALKBH7	Q9BT30	221 aa	Predicted RBP	10.59	□□□□□ -0.71
SHKBP1-223	ENST00000600552	XAGE1A	Q9HD64	81 aa		10.59	□□□□□ -0.71
SHKBP1-223	ENST00000600552	LPA	P08519	4548 aa		10.59	□□□□□ -0.71
SHKBP1-223	ENST00000600552	PRSS47	A8MTI9	375 aa		10.58	□□□□□ -0.72
SHKBP1-223	ENST00000600552	ORMDL2	Q53FV1	153 aa		10.58	□□□□□ -0.72
SHKBP1-223	ENST00000600552	IGLV1-50	A0A075B6I6	118 aa		10.57	□□□□□ -0.72
SHKBP1-223	ENST00000600552	LINC01561	Q8N1V8	128 aa		10.57	□□□□□ -0.72
SHKBP1-223	ENST00000600552	ANAPC16	Q96DE5	110 aa		10.57	□□□□□ -0.72
SHKBP1-223	ENST00000600552	AMELX	Q99217	191 aa		10.57	□□□□□ -0.72
SHKBP1-223	ENST00000600552	CTDSP1	Q9GZU7	261 aa		10.57	□□□□□ -0.72
SHKBP1-223	ENST00000600552	KRTAP1-4	P0C5Y4	121 aa		10.56	□□□□□ -0.72
SHKBP1-223	ENST00000600552	PRR4	Q16378	134 aa		10.56	□□□□□ -0.72
SHKBP1-223	ENST00000600552	GEMIN7	Q9H840	131 aa	Known RBP	10.56	□□□□□ -0.72
SHKBP1-223	ENST00000600552	C22orf24	Q9Y442	160 aa		10.56	□□□□□ -0.72
SHKBP1-223	ENST00000600552	CDKN2A-AS1	Q9UH64	79 aa		10.55	□□□□□ -0.72
SHKBP1-223	ENST00000600552	IGIP	A6NJ69	53 aa		10.54	□□□□□ -0.72
SHKBP1-223	ENST00000600552	PNRC1	Q12796	327 aa	Predicted RBP	10.54	□□□□□ -0.72
SHKBP1-223	ENST00000600552	KIAA1644	Q3SXP7	199 aa		10.54	□□□□□ -0.72
SHKBP1-223	ENST00000600552	RAB14	P61106	215 aa		10.53	□□□□□ -0.72
SHKBP1-223	ENST00000600552	HERVK_113	P63121	156 aa		10.53	□□□□□ -0.72
SHKBP1-223	ENST00000600552		Q8IZM0	81 aa		10.53	□□□□□ -0.72

Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms