RNA–Protein interactions for RNA: ENST00000600383.1

HIF3A-218, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2 BASIC

Gene HIF3A, Length 2,101 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-218ENST00000600383 HIST1H4GQ99525 98 aa10.48□□□□□ -0.73
HIF3A-218ENST00000600383 CLPSL2Q6UWE3 100 aa10.47□□□□□ -0.73
HIF3A-218ENST00000600383 DEFB131BA0A096LNP1 70 aa10.46□□□□□ -0.73
HIF3A-218ENST00000600383 SH2D6Q7Z4S9 175 aa10.46□□□□□ -0.73
HIF3A-218ENST00000600383 Q8N3U1 123 aa10.46□□□□□ -0.73
HIF3A-218ENST00000600383 IGLV5-45A0A087WSX0 123 aa10.46□□□□□ -0.74
HIF3A-218ENST00000600383 A0A1B0GUV1 79 aa10.46□□□□□ -0.74
HIF3A-218ENST00000600383 FAM19A3Q7Z5A8 133 aa10.45□□□□□ -0.74
HIF3A-218ENST00000600383 SRSF9Q13242 221 aaKnown RBP eCLIP10.45□□□□□ -0.74
HIF3A-218ENST00000600383 LYPD5Q6UWN5 251 aa10.45□□□□□ -0.74
HIF3A-218ENST00000600383 LELP1Q5T871 98 aa10.44□□□□□ -0.74
HIF3A-218ENST00000600383 CEND1Q8N111 149 aa10.44□□□□□ -0.74
HIF3A-218ENST00000600383 ANGP03950 147 aaKnown RBP10.43□□□□□ -0.74
HIF3A-218ENST00000600383 FXYD2P54710 66 aa10.43□□□□□ -0.74
HIF3A-218ENST00000600383 LINC00269Q8N2A0 174 aa10.43□□□□□ -0.74
HIF3A-218ENST00000600383 LINC00959A0A1B0GUT2 108 aa10.43□□□□□ -0.74
HIF3A-218ENST00000600383 TAX1BP3O14907 124 aa10.43□□□□□ -0.74
HIF3A-218ENST00000600383 NDUFA12Q9UI09 145 aa10.43□□□□□ -0.74
HIF3A-218ENST00000600383 H3BNG1 76 aa10.42□□□□□ -0.74
HIF3A-218ENST00000600383 A6NDN8 102 aa10.41□□□□□ -0.74
HIF3A-218ENST00000600383 SMIM1B2RUZ4 78 aa10.41□□□□□ -0.74
HIF3A-218ENST00000600383 XCL1P47992 114 aa10.41□□□□□ -0.74
HIF3A-218ENST00000600383 VAMP3Q15836 100 aa10.41□□□□□ -0.74
HIF3A-218ENST00000600383 C10orf126Q8N4M7 172 aa10.41□□□□□ -0.74
HIF3A-218ENST00000600383 SS18Q15532 418 aa10.4□□□□□ -0.74
HIF3A-218ENST00000600383 TAL2Q16559 108 aa10.4□□□□□ -0.74
HIF3A-218ENST00000600383 TM2D2Q9BX73 214 aa10.4□□□□□ -0.74
HIF3A-218ENST00000600383 C5orf38Q86SI9 138 aa10.4□□□□□ -0.74
HIF3A-218ENST00000600383 IGLV10-54A0A075B6I4 117 aa10.39□□□□□ -0.75
HIF3A-218ENST00000600383 A0A0J9YXY3 114 aa10.39□□□□□ -0.75
HIF3A-218ENST00000600383 RAB37Q96AX2 223 aa10.39□□□□□ -0.75
HIF3A-218ENST00000600383 IGHV3OR16-9A0A0B4J2B5 98 aa10.39□□□□□ -0.75
HIF3A-218ENST00000600383 IGLV5-39A0A0G2JS06 123 aa10.39□□□□□ -0.75
HIF3A-218ENST00000600383 REG3AQ06141 175 aa10.39□□□□□ -0.75
HIF3A-218ENST00000600383 ZFAND6Q6FIF0 208 aa10.39□□□□□ -0.75
HIF3A-218ENST00000600383 NHP2Q9NX24 153 aaKnown RBP10.39□□□□□ -0.75
HIF3A-218ENST00000600383 IGHV3-30P01768 117 aa10.38□□□□□ -0.75
HIF3A-218ENST00000600383 IGHV3-33P01772 117 aa10.38□□□□□ -0.75
HIF3A-218ENST00000600383 IGHV3-30-5P0DP03 117 aa10.38□□□□□ -0.75
HIF3A-218ENST00000600383 ZNF625Q96I27 306 aaPredicted RBP10.38□□□□□ -0.75
HIF3A-218ENST00000600383 TOMM7Q9P0U1 55 aa10.38□□□□□ -0.75
HIF3A-218ENST00000600383 ESRGQ1W209 222 aa10.37□□□□□ -0.75
HIF3A-218ENST00000600383 KLK12Q9UKR0 248 aa10.37□□□□□ -0.75
HIF3A-218ENST00000600383 TRAV10A0A0B4J240 114 aa10.37□□□□□ -0.75
HIF3A-218ENST00000600383 Q9H8V8 135 aa10.37□□□□□ -0.75
HIF3A-218ENST00000600383 K7ERJ3 54 aa10.36□□□□□ -0.75
HIF3A-218ENST00000600383 SMIM13P0DJ93 91 aa10.36□□□□□ -0.75
HIF3A-218ENST00000600383 WFDC10BQ8IUB3 73 aa10.36□□□□□ -0.75
HIF3A-218ENST00000600383 HUWE1Q7Z6Z7 4374 aaKnown RBP10.35□□□□□ -0.75
HIF3A-218ENST00000600383 PRSS2P07478 247 aa10.35□□□□□ -0.75
HIF3A-218ENST00000600383 SPANXB1Q9NS25 103 aaPredicted RBP10.35□□□□□ -0.75
HIF3A-218ENST00000600383 A0A087WZ39 114 aa10.34□□□□□ -0.75
HIF3A-218ENST00000600383 TMEM238C9JI98 176 aa10.34□□□□□ -0.75
HIF3A-218ENST00000600383 CHCHD10Q8WYQ3 142 aaPredicted RBP10.34□□□□□ -0.75
HIF3A-218ENST00000600383 NAA38Q9BRA0 125 aaKnown RBP10.34□□□□□ -0.75
HIF3A-218ENST00000600383 COL7A1Q02388 2944 aa10.34□□□□□ -0.75
HIF3A-218ENST00000600383 A0A0U1RRA0 63 aa10.34□□□□□ -0.75
HIF3A-218ENST00000600383 NDUFA1O15239 70 aa10.34□□□□□ -0.75
HIF3A-218ENST00000600383 OCIAD2Q56VL3 154 aa10.34□□□□□ -0.75
HIF3A-218ENST00000600383 ADAMTSL4-AS1Q5T5F5 129 aa10.34□□□□□ -0.75
HIF3A-218ENST00000600383 COX7B2Q8TF08 81 aa10.33□□□□□ -0.76
HIF3A-218ENST00000600383 B9D2Q9BPU9 175 aa10.33□□□□□ -0.76
HIF3A-218ENST00000600383 IGLL5B9A064 214 aa10.33□□□□□ -0.76
HIF3A-218ENST00000600383 STAB2Q8WWQ8 2551 aa10.32□□□□□ -0.76
HIF3A-218ENST00000600383 NPC2P61916 151 aa10.32□□□□□ -0.76
HIF3A-218ENST00000600383 MUSTN1Q8IVN3 82 aa10.32□□□□□ -0.76
HIF3A-218ENST00000600383 DAND5Q8N907 189 aa10.32□□□□□ -0.76
HIF3A-218ENST00000600383 CD164L2Q6UWJ8 174 aa10.31□□□□□ -0.76
HIF3A-218ENST00000600383 UBE2WQ96B02 151 aa10.31□□□□□ -0.76
HIF3A-218ENST00000600383 LITAFQ99732 161 aa10.31□□□□□ -0.76
HIF3A-218ENST00000600383 TMEM238LA0A1B0GVL6 79 aa10.31□□□□□ -0.76
HIF3A-218ENST00000600383 A6NJY4 79 aa10.31□□□□□ -0.76
HIF3A-218ENST00000600383 H3BUT2 72 aa10.31□□□□□ -0.76
HIF3A-218ENST00000600383 RNF151Q2KHN1 245 aa10.31□□□□□ -0.76
HIF3A-218ENST00000600383 APOMO95445 188 aa10.3□□□□□ -0.76
HIF3A-218ENST00000600383 CRPP02741 224 aa10.3□□□□□ -0.76
HIF3A-218ENST00000600383 CIRBPQ14011 172 aaKnown RBP10.3□□□□□ -0.76
HIF3A-218ENST00000600383 MEIG1Q5JSS6 88 aa10.3□□□□□ -0.76
HIF3A-218ENST00000600383 ENHOQ6UWT2 76 aa10.3□□□□□ -0.76
HIF3A-218ENST00000600383 COX7A2LO14548 114 aa10.3□□□□□ -0.76
HIF3A-218ENST00000600383 MALP21145 153 aa10.3□□□□□ -0.76
HIF3A-218ENST00000600383 C6orf226Q5I0X4 101 aa10.3□□□□□ -0.76
HIF3A-218ENST00000600383 C9orf118A6NHY6 69 aa10.29□□□□□ -0.76
HIF3A-218ENST00000600383 C15orf53Q8NAA6 179 aa10.29□□□□□ -0.76
HIF3A-218ENST00000600383 PRR34Q9NV39 138 aa10.29□□□□□ -0.76
HIF3A-218ENST00000600383 A4D1N5 150 aa10.28□□□□□ -0.76
HIF3A-218ENST00000600383 GAGE12HA6NDE8 117 aa10.28□□□□□ -0.76
HIF3A-218ENST00000600383 K7ERU9 68 aa10.28□□□□□ -0.76
HIF3A-218ENST00000600383 VPS25Q9BRG1 176 aa10.28□□□□□ -0.76
HIF3A-218ENST00000600383 RPL24P83731 157 aaKnown RBP10.27□□□□□ -0.77
HIF3A-218ENST00000600383 HERV-K104P63124 156 aa10.27□□□□□ -0.77
HIF3A-218ENST00000600383 FOXI1Q12951 378 aa10.27□□□□□ -0.77
HIF3A-218ENST00000600383 MIAQ16674 131 aa10.27□□□□□ -0.77
HIF3A-218ENST00000600383 SPANXDQ9BXN6 97 aa10.26□□□□□ -0.77
HIF3A-218ENST00000600383 SPANXCQ9NY87 97 aa10.26□□□□□ -0.77
HIF3A-218ENST00000600383 TIMM17BO60830 172 aa10.25□□□□□ -0.77
HIF3A-218ENST00000600383 CFC1BP0CG36 223 aa10.25□□□□□ -0.77
HIF3A-218ENST00000600383 CFC1P0CG37 223 aa10.25□□□□□ -0.77
HIF3A-218ENST00000600383 A0A1B0GWB2 263 aa10.25□□□□□ -0.77
HIF3A-218ENST00000600383 GAGE10A6NGK3 116 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms