RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 COX7A2LO14548 114 aa9.8□□□□□ -0.84
LIG1-219ENST00000600055 CHCHD1Q96BP2 118 aaKnown RBP9.8□□□□□ -0.84
LIG1-219ENST00000600055 TMEM141Q96I45 108 aa9.8□□□□□ -0.84
LIG1-219ENST00000600055 IGIPA6NJ69 53 aa9.79□□□□□ -0.84
LIG1-219ENST00000600055 SDIM1Q6ZPB5 146 aa9.79□□□□□ -0.84
LIG1-219ENST00000600055 LINC01546A6NGU7 62 aa9.78□□□□□ -0.84
LIG1-219ENST00000600055 MALP21145 153 aa9.78□□□□□ -0.84
LIG1-219ENST00000600055 LINC00173Q6ZV60 143 aa9.78□□□□□ -0.84
LIG1-219ENST00000600055 SCXQ7RTU7 201 aa9.78□□□□□ -0.84
LIG1-219ENST00000600055 TOMM6Q96B49 74 aa9.78□□□□□ -0.84
LIG1-219ENST00000600055 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.77□□□□□ -0.85
LIG1-219ENST00000600055 PANO1I0J062 215 aa9.77□□□□□ -0.85
LIG1-219ENST00000600055 PAPPA-AS1Q5QFB9 102 aa9.77□□□□□ -0.85
LIG1-219ENST00000600055 TEX43Q6ZNM6 134 aa9.77□□□□□ -0.85
LIG1-219ENST00000600055 CHAC1Q9BUX1 264 aa9.77□□□□□ -0.85
LIG1-219ENST00000600055 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.77□□□□□ -0.85
LIG1-219ENST00000600055 IGHV3-64A0A075B6Q5 118 aa9.76□□□□□ -0.85
LIG1-219ENST00000600055 IGHV3OR16-9A0A0B4J2B5 98 aa9.76□□□□□ -0.85
LIG1-219ENST00000600055 HSBP1O75506 76 aa9.76□□□□□ -0.85
LIG1-219ENST00000600055 NPSP0C0P6 89 aa9.76□□□□□ -0.85
LIG1-219ENST00000600055 COX6A2Q02221 97 aa9.76□□□□□ -0.85
LIG1-219ENST00000600055 LINC00242Q5T6M2 205 aa9.76□□□□□ -0.85
LIG1-219ENST00000600055 CIRBP-AS1Q8TBR5 109 aa9.76□□□□□ -0.85
LIG1-219ENST00000600055 AMELXQ99217 191 aa9.76□□□□□ -0.85
LIG1-219ENST00000600055 VCX2Q9H322 139 aa9.76□□□□□ -0.85
LIG1-219ENST00000600055 ABCA13Q86UQ4 5058 aa9.75□□□□□ -0.85
LIG1-219ENST00000600055 EPM2AB3EWF7 344 aa9.75□□□□□ -0.85
LIG1-219ENST00000600055 ZNF561-AS1K7EIQ3 104 aa9.75□□□□□ -0.85
LIG1-219ENST00000600055 HIST1H2BKO60814 126 aa9.75□□□□□ -0.85
LIG1-219ENST00000600055 HIST1H2BJP06899 126 aa9.75□□□□□ -0.85
LIG1-219ENST00000600055 HIST1H2BOP23527 126 aa9.75□□□□□ -0.85
LIG1-219ENST00000600055 HIST1H2BBP33778 126 aa9.75□□□□□ -0.85
LIG1-219ENST00000600055 UBE2D1P51668 147 aa9.75□□□□□ -0.85
LIG1-219ENST00000600055 HIST1H2BDP58876 126 aa9.75□□□□□ -0.85
LIG1-219ENST00000600055 HIST1H2BCP62807 126 aa9.75□□□□□ -0.85
LIG1-219ENST00000600055 HIST2H2BEQ16778 126 aa9.75□□□□□ -0.85
LIG1-219ENST00000600055 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.75□□□□□ -0.85
LIG1-219ENST00000600055 Q5VSD8 79 aa9.75□□□□□ -0.85
LIG1-219ENST00000600055 Q6ZN92 141 aa9.75□□□□□ -0.85
LIG1-219ENST00000600055 HIST1H2BHQ93079 126 aa9.75□□□□□ -0.85
LIG1-219ENST00000600055 URB1-AS1Q96HZ7 61 aa9.75□□□□□ -0.85
LIG1-219ENST00000600055 HIST1H2BNQ99877 126 aa9.75□□□□□ -0.85
LIG1-219ENST00000600055 HIST1H2BMQ99879 126 aa9.75□□□□□ -0.85
LIG1-219ENST00000600055 PCLOQ9Y6V0 5065 aa9.74□□□□□ -0.85
LIG1-219ENST00000600055 IGLV4-69A0A075B6H9 119 aa9.74□□□□□ -0.85
LIG1-219ENST00000600055 CHTF8P0CG12 524 aa9.74□□□□□ -0.85
LIG1-219ENST00000600055 SCGB3A1Q96QR1 104 aa9.74□□□□□ -0.85
LIG1-219ENST00000600055 TIMM17AQ99595 171 aa9.74□□□□□ -0.85
LIG1-219ENST00000600055 C2orf88Q9BSF0 95 aa9.74□□□□□ -0.85
LIG1-219ENST00000600055 FAT1Q14517 4588 aa9.73□□□□□ -0.85
LIG1-219ENST00000600055 HBDP02042 147 aa9.73□□□□□ -0.85
LIG1-219ENST00000600055 APOMO95445 188 aa9.72□□□□□ -0.85
LIG1-219ENST00000600055 SPAG11BQ08648 103 aa9.72□□□□□ -0.85
LIG1-219ENST00000600055 SYCNQ0VAF6 134 aa9.72□□□□□ -0.85
LIG1-219ENST00000600055 ERASQ7Z444 233 aa9.72□□□□□ -0.85
LIG1-219ENST00000600055 CARD19Q96LW7 228 aa9.72□□□□□ -0.85
LIG1-219ENST00000600055 SERF1AO75920 110 aa9.71□□□□□ -0.86
LIG1-219ENST00000600055 S100A6P06703 90 aa9.71□□□□□ -0.86
LIG1-219ENST00000600055 Q6ZRU5 148 aa9.71□□□□□ -0.86
LIG1-219ENST00000600055 ORAOV1Q8WV07 137 aa9.71□□□□□ -0.86
LIG1-219ENST00000600055 A0A087WZ39 114 aa9.7□□□□□ -0.86
LIG1-219ENST00000600055 A0A096LNJ9 63 aa9.7□□□□□ -0.86
LIG1-219ENST00000600055 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.7□□□□□ -0.86
LIG1-219ENST00000600055 ATP5LO75964 103 aa9.7□□□□□ -0.86
LIG1-219ENST00000600055 PMCHL1Q16048 86 aa9.7□□□□□ -0.86
LIG1-219ENST00000600055 LINC00528Q8N1L1 170 aa9.7□□□□□ -0.86
LIG1-219ENST00000600055 FAM229AH3BQW9 127 aa9.69□□□□□ -0.86
LIG1-219ENST00000600055 NDUFA6P56556 154 aa9.69□□□□□ -0.86
LIG1-219ENST00000600055 CIRBPQ14011 172 aaKnown RBP9.69□□□□□ -0.86
LIG1-219ENST00000600055 COA6Q5JTJ3 125 aaKnown RBP9.69□□□□□ -0.86
LIG1-219ENST00000600055 FAM19A3Q7Z5A8 133 aa9.69□□□□□ -0.86
LIG1-219ENST00000600055 OR10D4PQ8NGN7 298 aa9.69□□□□□ -0.86
LIG1-219ENST00000600055 CAMK2N2Q96S95 79 aa9.69□□□□□ -0.86
LIG1-219ENST00000600055 VPS13BQ7Z7G8 4022 aa9.68□□□□□ -0.86
LIG1-219ENST00000600055 IGKV2-24A0A0C4DH68 120 aa9.68□□□□□ -0.86
LIG1-219ENST00000600055 A0A0J9YXV3 536 aa9.68□□□□□ -0.86
LIG1-219ENST00000600055 SPACA4Q8TDM5 124 aa9.68□□□□□ -0.86
LIG1-219ENST00000600055 DPH3Q96FX2 82 aa9.68□□□□□ -0.86
LIG1-219ENST00000600055 C2orf48Q96LS8 159 aa9.68□□□□□ -0.86
LIG1-219ENST00000600055 A0A096LNI7 61 aa9.67□□□□□ -0.86
LIG1-219ENST00000600055 HSPB8Q9UJY1 196 aa9.67□□□□□ -0.86
LIG1-219ENST00000600055 A0A087WYN8 130 aa9.66□□□□□ -0.86
LIG1-219ENST00000600055 LEPROTL1O95214 131 aa9.66□□□□□ -0.86
LIG1-219ENST00000600055 KIAA0087Q14695 138 aa9.66□□□□□ -0.86
LIG1-219ENST00000600055 MAJINQ3KP22 176 aa9.66□□□□□ -0.86
LIG1-219ENST00000600055 C10orf25Q5T742 122 aa9.66□□□□□ -0.86
LIG1-219ENST00000600055 CST9LQ9H4G1 147 aa9.66□□□□□ -0.86
LIG1-219ENST00000600055 CDKN2A-AS1Q9UH64 79 aa9.66□□□□□ -0.86
LIG1-219ENST00000600055 HERVK_113P63121 156 aa9.65□□□□□ -0.86
LIG1-219ENST00000600055 SEC11AP67812 179 aa9.65□□□□□ -0.86
LIG1-219ENST00000600055 PMVKQ15126 192 aa9.65□□□□□ -0.86
LIG1-219ENST00000600055 PDZD11Q5EBL8 140 aa9.65□□□□□ -0.86
LIG1-219ENST00000600055 PACRGQ96M98 296 aaPredicted RBP9.65□□□□□ -0.86
LIG1-219ENST00000600055 GEMIN7Q9H840 131 aaKnown RBP9.65□□□□□ -0.86
LIG1-219ENST00000600055 UNQ6190/PRO20217Q6UXQ8 127 aa9.64□□□□□ -0.87
LIG1-219ENST00000600055 LINC01561Q8N1V8 128 aa9.64□□□□□ -0.87
LIG1-219ENST00000600055 FAM19A2Q8N3H0 131 aa9.64□□□□□ -0.87
LIG1-219ENST00000600055 LOC107984640A0A0U1RRK4 108 aa9.63□□□□□ -0.87
LIG1-219ENST00000600055 NDUFA1O15239 70 aa9.63□□□□□ -0.87
LIG1-219ENST00000600055 INAFM2P0DMQ5 153 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms